RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 GPT2Q8TD30 523 aa15.3■□□□□ 0.04
NUP88-201ENST00000225696 RGS12O14924 1447 aa15.3■□□□□ 0.04
NUP88-201ENST00000225696 REREQ9P2R6 1566 aa15.29■□□□□ 0.04
NUP88-201ENST00000225696 RRP9O43818 475 aaKnown RBP15.29■□□□□ 0.04
NUP88-201ENST00000225696 PRPF40AO75400 957 aaKnown RBP15.29■□□□□ 0.04
NUP88-201ENST00000225696 PRIM1P49642 420 aaKnown RBP15.29■□□□□ 0.04
NUP88-201ENST00000225696 INTS3Q68E01 1043 aaKnown RBP15.29■□□□□ 0.04
NUP88-201ENST00000225696 ANKRD44Q8N8A2 993 aa15.29■□□□□ 0.04
NUP88-201ENST00000225696 MEIS3Q99687 375 aa15.29■□□□□ 0.04
NUP88-201ENST00000225696 NSFL1CQ9UNZ2 370 aaKnown RBP15.29■□□□□ 0.04
NUP88-201ENST00000225696 FOXD4L5Q5VV16 416 aaPredicted RBP15.29■□□□□ 0.04
NUP88-201ENST00000225696 KIAA1211Q6ZU35 1233 aa15.29■□□□□ 0.04
NUP88-201ENST00000225696 ZSCAN30Q86W11 494 aa15.29■□□□□ 0.04
NUP88-201ENST00000225696 FOXD4L4Q8WXT5 416 aaPredicted RBP15.29■□□□□ 0.04
NUP88-201ENST00000225696 IBTKQ9P2D0 1353 aaPredicted RBP15.29■□□□□ 0.04
NUP88-201ENST00000225696 ZNF445P59923 1031 aa15.28■□□□□ 0.04
NUP88-201ENST00000225696 MCM10Q7L590 875 aa15.28■□□□□ 0.04
NUP88-201ENST00000225696 VSIG10Q8N0Z9 540 aa15.28■□□□□ 0.04
NUP88-201ENST00000225696 MSH6P52701 1360 aa15.27■□□□□ 0.04
NUP88-201ENST00000225696 PREX1Q8TCU6 1659 aa15.27■□□□□ 0.04
NUP88-201ENST00000225696 TSPOAP1O95153 1857 aa15.27■□□□□ 0.04
NUP88-201ENST00000225696 TSHZ3Q63HK5 1081 aa15.27■□□□□ 0.04
NUP88-201ENST00000225696 NUCB2P80303 420 aa15.26■□□□□ 0.03
NUP88-201ENST00000225696 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.26■□□□□ 0.03
NUP88-201ENST00000225696 STAG3Q9UJ98 1225 aa15.26■□□□□ 0.03
NUP88-201ENST00000225696 RTL1A6NKG5 1358 aa15.26■□□□□ 0.03
NUP88-201ENST00000225696 CPSF1Q10570 1443 aaKnown RBP15.26■□□□□ 0.03
NUP88-201ENST00000225696 ATP7BP35670 1465 aa15.26■□□□□ 0.03
NUP88-201ENST00000225696 CPS1P31327 1500 aa15.26■□□□□ 0.03
NUP88-201ENST00000225696 MIS18AQ9NYP9 233 aa15.25■□□□□ 0.03
NUP88-201ENST00000225696 CDK12Q9NYV4 1490 aaPredicted RBP15.25■□□□□ 0.03
NUP88-201ENST00000225696 TMEM63CQ9P1W3 806 aa15.25■□□□□ 0.03
NUP88-201ENST00000225696 SULT6B1Q6IMI4 303 aa15.24■□□□□ 0.03
NUP88-201ENST00000225696 KIF24Q5T7B8 1368 aa15.24■□□□□ 0.03
NUP88-201ENST00000225696 OFD1O75665 1012 aa15.24■□□□□ 0.03
NUP88-201ENST00000225696 LMOD3Q0VAK6 560 aa15.24■□□□□ 0.03
NUP88-201ENST00000225696 RPAP2Q8IXW5 612 aaPredicted RBP15.24■□□□□ 0.03
NUP88-201ENST00000225696 AGLP35573 1532 aa15.23■□□□□ 0.03
NUP88-201ENST00000225696 EDC4Q6P2E9 1401 aaKnown RBP15.23■□□□□ 0.03
NUP88-201ENST00000225696 F6X3S4 739 aa15.23■□□□□ 0.03
NUP88-201ENST00000225696 WASLO00401 505 aaPredicted RBP15.23■□□□□ 0.03
NUP88-201ENST00000225696 G2E3Q7L622 706 aa15.23■□□□□ 0.03
NUP88-201ENST00000225696 TXNDC2Q86VQ3 553 aa15.23■□□□□ 0.03
NUP88-201ENST00000225696 ANP32BQ92688 251 aaKnown RBP15.23■□□□□ 0.03
NUP88-201ENST00000225696 COG3Q96JB2 828 aa15.23■□□□□ 0.03
NUP88-201ENST00000225696 ZMYND15Q9H091 742 aa15.23■□□□□ 0.03
NUP88-201ENST00000225696 CHL1O00533 1208 aa15.22■□□□□ 0.03
NUP88-201ENST00000225696 PDLIM2Q96JY6 352 aa15.22■□□□□ 0.03
NUP88-201ENST00000225696 SYCE3A1L190 88 aa15.22■□□□□ 0.03
NUP88-201ENST00000225696 ST18O60284 1047 aa15.22■□□□□ 0.03
NUP88-201ENST00000225696 XPCQ01831 940 aaPredicted RBP15.22■□□□□ 0.03
NUP88-201ENST00000225696 EIF4A2Q14240 407 aaKnown RBP15.22■□□□□ 0.03
NUP88-201ENST00000225696 NUDT16Q96DE0 195 aaKnown RBP15.22■□□□□ 0.03
NUP88-201ENST00000225696 AATKQ6ZMQ8 1374 aa15.21■□□□□ 0.03
NUP88-201ENST00000225696 SLC4A2P04920 1241 aa15.21■□□□□ 0.03
NUP88-201ENST00000225696 TPM2P07951 284 aa15.21■□□□□ 0.03
NUP88-201ENST00000225696 MSNP26038 577 aaKnown RBP15.21■□□□□ 0.03
NUP88-201ENST00000225696 CWC22Q9HCG8 908 aaKnown RBP15.21■□□□□ 0.03
NUP88-201ENST00000225696 PALD1Q9ULE6 856 aa15.21■□□□□ 0.02
NUP88-201ENST00000225696 ERC2O15083 957 aa15.2■□□□□ 0.02
NUP88-201ENST00000225696 NEK4P51957 841 aa15.2■□□□□ 0.02
NUP88-201ENST00000225696 PDE1AP54750 535 aa15.2■□□□□ 0.02
NUP88-201ENST00000225696 RBM10P98175 930 aaKnown RBP15.2■□□□□ 0.02
NUP88-201ENST00000225696 SLC4A10Q6U841 1118 aa15.2■□□□□ 0.02
NUP88-201ENST00000225696 NOL8Q76FK4 1167 aaKnown RBP15.2■□□□□ 0.02
NUP88-201ENST00000225696 TMX3Q96JJ7 454 aa15.2■□□□□ 0.02
NUP88-201ENST00000225696 PPP6R1Q9UPN7 881 aa15.2■□□□□ 0.02
NUP88-201ENST00000225696 FOXO3O43524 673 aa15.19■□□□□ 0.02
NUP88-201ENST00000225696 GLIPR1L2Q4G1C9 344 aa15.19■□□□□ 0.02
NUP88-201ENST00000225696 NOL7Q9UMY1 257 aaKnown RBP15.19■□□□□ 0.02
NUP88-201ENST00000225696 EXOC6BQ9Y2D4 811 aa15.19■□□□□ 0.02
NUP88-201ENST00000225696 METP08581 1390 aa15.19■□□□□ 0.02
NUP88-201ENST00000225696 RNF214Q8ND24 703 aa15.19■□□□□ 0.02
NUP88-201ENST00000225696 R3HCC1Q9Y3T6 440 aaKnown RBP15.19■□□□□ 0.02
NUP88-201ENST00000225696 REC8O95072 547 aa15.18■□□□□ 0.02
NUP88-201ENST00000225696 FOXD4L6Q3SYB3 417 aaPredicted RBP15.18■□□□□ 0.02
NUP88-201ENST00000225696 CASC1Q6TDU7 716 aa15.18■□□□□ 0.02
NUP88-201ENST00000225696 FOXD4L3Q6VB84 417 aaPredicted RBP15.18■□□□□ 0.02
NUP88-201ENST00000225696 HSP90AB2PQ58FF8 381 aa15.18■□□□□ 0.02
NUP88-201ENST00000225696 PRR36Q9H6K5 1346 aa15.17■□□□□ 0.02
NUP88-201ENST00000225696 SOX12O15370 315 aa15.17■□□□□ 0.02
NUP88-201ENST00000225696 LRSAM1Q6UWE0 723 aa15.17■□□□□ 0.02
NUP88-201ENST00000225696 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.17■□□□□ 0.02
NUP88-201ENST00000225696 CCDC61Q9Y6R9 512 aa15.17■□□□□ 0.02
NUP88-201ENST00000225696 A2ML1A8K2U0 1454 aa15.16■□□□□ 0.02
NUP88-201ENST00000225696 DLC1Q96QB1 1528 aa15.16■□□□□ 0.02
NUP88-201ENST00000225696 SETD1AO15047 1707 aaKnown RBP15.16■□□□□ 0.02
NUP88-201ENST00000225696 NUTM2FA1L443 756 aa15.15■□□□□ 0.02
NUP88-201ENST00000225696 IL25Q9H293 177 aa15.15■□□□□ 0.02
NUP88-201ENST00000225696 OSBPL3Q9H4L5 887 aa15.15■□□□□ 0.02
NUP88-201ENST00000225696 GDPD2Q9HCC8 539 aa15.15■□□□□ 0.02
NUP88-201ENST00000225696 PTPRCP08575 1304 aa15.15■□□□□ 0.02
NUP88-201ENST00000225696 ZNF500O60304 480 aaPredicted RBP15.15■□□□□ 0.02
NUP88-201ENST00000225696 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.15■□□□□ 0.02
NUP88-201ENST00000225696 UNC5CLQ8IV45 518 aa15.15■□□□□ 0.02
NUP88-201ENST00000225696 CRB1P82279 1406 aa15.14■□□□□ 0.01
NUP88-201ENST00000225696 PNMA6EA0A0J9YXQ4 647 aa15.14■□□□□ 0.01
NUP88-201ENST00000225696 BRD1O95696 1058 aa15.14■□□□□ 0.01
NUP88-201ENST00000225696 HS1BP3Q53T59 392 aa15.14■□□□□ 0.01
NUP88-201ENST00000225696 PKNOX2Q96KN3 472 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 89.2 ms