RNA–Protein interactions for RNA: ENST00000219084.10

CHD9-201, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 1 (best)

Gene CHD9, Length 8,739 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-201ENST00000219084 RTEL1-TNFRSF6BF6WH68 1400 aa5.21□□□□□ -1.58
CHD9-201ENST00000219084 ARHGEF5Q12774 1597 aa5.21□□□□□ -1.58
CHD9-201ENST00000219084 SMC2O95347 1197 aa5.21□□□□□ -1.58
CHD9-201ENST00000219084 KIF6Q6ZMV9 814 aa5.21□□□□□ -1.58
CHD9-201ENST00000219084 SENP3Q9H4L4 574 aaPredicted RBP5.21□□□□□ -1.58
CHD9-201ENST00000219084 SLC4A3P48751 1232 aa5.2□□□□□ -1.58
CHD9-201ENST00000219084 CCDC83Q8IWF9 413 aa5.2□□□□□ -1.58
CHD9-201ENST00000219084 MAP3K11Q16584 847 aa5.2□□□□□ -1.58
CHD9-201ENST00000219084 CCDC43Q96MW1 224 aaKnown RBP5.2□□□□□ -1.58
CHD9-201ENST00000219084 SYNMO15061 1565 aa5.2□□□□□ -1.58
CHD9-201ENST00000219084 TTC21BQ7Z4L5 1316 aa5.2□□□□□ -1.58
CHD9-201ENST00000219084 UQCRHLA0A096LP55 91 aa5.2□□□□□ -1.58
CHD9-201ENST00000219084 UQCRHP07919 91 aa5.2□□□□□ -1.58
CHD9-201ENST00000219084 PRKCSHP14314 528 aaPredicted RBP5.2□□□□□ -1.58
CHD9-201ENST00000219084 RIC3Q7Z5B4 369 aa5.2□□□□□ -1.58
CHD9-201ENST00000219084 RAPGEF4Q8WZA2 1011 aa5.2□□□□□ -1.58
CHD9-201ENST00000219084 NOL7Q9UMY1 257 aaKnown RBP5.2□□□□□ -1.58
CHD9-201ENST00000219084 VPS53Q5VIR6 699 aa5.2□□□□□ -1.58
CHD9-201ENST00000219084 PIK3C2GO75747 1445 aa5.2□□□□□ -1.58
CHD9-201ENST00000219084 DCAF8L1A6NGE4 600 aa5.2□□□□□ -1.58
CHD9-201ENST00000219084 PRPF40AO75400 957 aaKnown RBP5.2□□□□□ -1.58
CHD9-201ENST00000219084 STK38Q15208 465 aa5.2□□□□□ -1.58
CHD9-201ENST00000219084 ODF2Q5BJF6 829 aa5.2□□□□□ -1.58
CHD9-201ENST00000219084 NUP62CLQ9H1M0 184 aa5.2□□□□□ -1.58
CHD9-201ENST00000219084 PAXBP1Q9Y5B6 917 aa5.2□□□□□ -1.58
CHD9-201ENST00000219084 CCDC158Q5M9N0 1113 aa5.2□□□□□ -1.58
CHD9-201ENST00000219084 SOS1Q07889 1333 aaPredicted RBP5.2□□□□□ -1.58
CHD9-201ENST00000219084 PLEKHG5O94827 1062 aa5.19□□□□□ -1.58
CHD9-201ENST00000219084 KDM5DQ9BY66 1539 aa5.19□□□□□ -1.58
CHD9-201ENST00000219084 OFD1O75665 1012 aa5.19□□□□□ -1.58
CHD9-201ENST00000219084 CT47A1Q5JQC4 288 aaPredicted RBP5.19□□□□□ -1.58
CHD9-201ENST00000219084 ZNF397Q8NF99 534 aaPredicted RBP5.19□□□□□ -1.58
CHD9-201ENST00000219084 CALCOCO1Q9P1Z2 691 aa5.19□□□□□ -1.58
CHD9-201ENST00000219084 OSCARQ8IYS5 282 aa5.19□□□□□ -1.58
CHD9-201ENST00000219084 BMP2KLQ5H9B9 411 aa5.19□□□□□ -1.58
CHD9-201ENST00000219084 CCDC148Q8NFR7 591 aa5.19□□□□□ -1.58
CHD9-201ENST00000219084 PUS7Q96PZ0 661 aaKnown RBP5.19□□□□□ -1.58
CHD9-201ENST00000219084 GTPBP4Q9BZE4 634 aaKnown RBP5.19□□□□□ -1.58
CHD9-201ENST00000219084 ZNF330Q9Y3S2 320 aaPredicted RBP5.19□□□□□ -1.58
CHD9-201ENST00000219084 FGFR1OPO95684 399 aaKnown RBP5.19□□□□□ -1.58
CHD9-201ENST00000219084 NAP1L1P55209 391 aaKnown RBP5.19□□□□□ -1.58
CHD9-201ENST00000219084 NFE2L2Q16236 605 aa5.19□□□□□ -1.58
CHD9-201ENST00000219084 KIF18AQ8NI77 898 aa5.19□□□□□ -1.58
CHD9-201ENST00000219084 SPATA32Q96LK8 384 aa5.19□□□□□ -1.58
CHD9-201ENST00000219084 ADGRL1O94910 1474 aa5.19□□□□□ -1.58
CHD9-201ENST00000219084 CROCC2H7BZ55 1655 aa5.19□□□□□ -1.58
CHD9-201ENST00000219084 IMMTQ16891 758 aaKnown RBP5.19□□□□□ -1.58
CHD9-201ENST00000219084 CCAR1Q8IX12 1150 aaKnown RBP5.19□□□□□ -1.58
CHD9-201ENST00000219084 CDK5RAP3Q96JB5 506 aa5.19□□□□□ -1.58
CHD9-201ENST00000219084 CCDC27Q2M243 656 aa5.19□□□□□ -1.58
CHD9-201ENST00000219084 CCDC57Q2TAC2 916 aa5.18□□□□□ -1.58
CHD9-201ENST00000219084 ARHGAP45Q92619 1136 aa5.18□□□□□ -1.58
CHD9-201ENST00000219084 U3KPZ7 1027 aaPredicted RBP5.18□□□□□ -1.58
CHD9-201ENST00000219084 SERPINC1P01008 464 aa5.18□□□□□ -1.58
CHD9-201ENST00000219084 EVA1CP58658 441 aa5.18□□□□□ -1.58
CHD9-201ENST00000219084 FILIP1Q7Z7B0 1213 aa5.18□□□□□ -1.58
CHD9-201ENST00000219084 EHBP1Q8NDI1 1231 aa5.18□□□□□ -1.58
CHD9-201ENST00000219084 ZNF287Q9HBT7 754 aa5.18□□□□□ -1.58
CHD9-201ENST00000219084 HMG20BQ9P0W2 317 aa5.18□□□□□ -1.58
CHD9-201ENST00000219084 CCDC196A0A1B0GTZ2 297 aa5.18□□□□□ -1.58
CHD9-201ENST00000219084 PRKAR2BP31323 418 aa5.18□□□□□ -1.58
CHD9-201ENST00000219084 PDILTQ8N807 584 aa5.18□□□□□ -1.58
CHD9-201ENST00000219084 DEF6Q9H4E7 631 aa5.18□□□□□ -1.58
CHD9-201ENST00000219084 ANO10Q9NW15 660 aa5.18□□□□□ -1.58
CHD9-201ENST00000219084 CTDP1Q9Y5B0 961 aaPredicted RBP5.18□□□□□ -1.58
CHD9-201ENST00000219084 ANAPC15P60006 121 aa5.18□□□□□ -1.58
CHD9-201ENST00000219084 MICALCLQ6ZW33 695 aa5.18□□□□□ -1.58
CHD9-201ENST00000219084 ZNF644Q9H582 1327 aaPredicted RBP5.18□□□□□ -1.58
CHD9-201ENST00000219084 GLRX3O76003 335 aaKnown RBP5.18□□□□□ -1.58
CHD9-201ENST00000219084 HDAC1Q13547 482 aaPredicted RBP5.18□□□□□ -1.58
CHD9-201ENST00000219084 LARP1BQ659C4 914 aaKnown RBP5.18□□□□□ -1.58
CHD9-201ENST00000219084 BLOC1S2Q6QNY1 142 aa5.18□□□□□ -1.58
CHD9-201ENST00000219084 DDX19AQ9NUU7 478 aaKnown RBP5.18□□□□□ -1.58
CHD9-201ENST00000219084 ADGRL2O95490 1459 aa5.18□□□□□ -1.58
CHD9-201ENST00000219084 PARD3Q8TEW0 1356 aa5.18□□□□□ -1.58
CHD9-201ENST00000219084 GOLGA6L10A0A0M3HER8 536 aa5.18□□□□□ -1.58
CHD9-201ENST00000219084 EIF2S2P20042 333 aaKnown RBP5.18□□□□□ -1.58
CHD9-201ENST00000219084 SURF6O75683 361 aaKnown RBP5.18□□□□□ -1.58
CHD9-201ENST00000219084 SYCP1Q15431 976 aa5.18□□□□□ -1.58
CHD9-201ENST00000219084 JAKMIP3Q5VZ66 844 aa5.18□□□□□ -1.58
CHD9-201ENST00000219084 KIF1BPQ96EK5 621 aa5.18□□□□□ -1.58
CHD9-201ENST00000219084 DNAI2Q9GZS0 605 aa5.18□□□□□ -1.58
CHD9-201ENST00000219084 PDRG1Q9NUG6 133 aa5.18□□□□□ -1.58
CHD9-201ENST00000219084 PRAG1Q86YV5 1406 aa5.18□□□□□ -1.58
CHD9-201ENST00000219084 NPC1L1Q9UHC9 1359 aa5.17□□□□□ -1.58
CHD9-201ENST00000219084 CCDC171Q6TFL3 1326 aa5.17□□□□□ -1.58
CHD9-201ENST00000219084 DDX12PQ92771 950 aa5.17□□□□□ -1.58
CHD9-201ENST00000219084 KDM5BQ9UGL1 1544 aa5.17□□□□□ -1.58
CHD9-201ENST00000219084 KLHL34Q8N239 644 aa5.17□□□□□ -1.58
CHD9-201ENST00000219084 UPF3BQ9BZI7 483 aaKnown RBP5.17□□□□□ -1.58
CHD9-201ENST00000219084 DESP17661 470 aa5.17□□□□□ -1.58
CHD9-201ENST00000219084 ME1P48163 572 aa5.17□□□□□ -1.58
CHD9-201ENST00000219084 EXOSC9Q06265 439 aaKnown RBP5.17□□□□□ -1.58
CHD9-201ENST00000219084 KANK3Q6NY19 840 aa5.17□□□□□ -1.58
CHD9-201ENST00000219084 TUBBP07437 444 aa5.17□□□□□ -1.58
CHD9-201ENST00000219084 SFPQP23246 707 aaKnown RBP eCLIP5.17□□□□□ -1.58
CHD9-201ENST00000219084 CCDC150Q8NCX0 1101 aa5.17□□□□□ -1.58
CHD9-201ENST00000219084 SNX21Q969T3 373 aa5.17□□□□□ -1.58
CHD9-201ENST00000219084 SPG7Q9UQ90 795 aa5.17□□□□□ -1.58
CHD9-201ENST00000219084 AKAP2Q9Y2D5 859 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms