RNA–Protein interactions for RNA: ENST00000003912.7

NIPAL3-201, Transcript of NIPA like domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene NIPAL3, Length 5,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3-201ENST00000003912 RRP12Q5JTH9 1297 aaKnown RBP12.44□□□□□ -0.42
NIPAL3-201ENST00000003912 LMTK3Q96Q04 1460 aa12.43□□□□□ -0.42
NIPAL3-201ENST00000003912 AMER1Q5JTC6 1135 aaPredicted RBP12.43□□□□□ -0.42
NIPAL3-201ENST00000003912 LRRC59Q96AG4 307 aaKnown RBP12.43□□□□□ -0.42
NIPAL3-201ENST00000003912 AKAP2Q9Y2D5 859 aa12.43□□□□□ -0.42
NIPAL3-201ENST00000003912 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.43□□□□□ -0.42
NIPAL3-201ENST00000003912 FKBP4Q02790 459 aaKnown RBP eCLIP12.43□□□□□ -0.42
NIPAL3-201ENST00000003912 MYD88Q99836 296 aa12.43□□□□□ -0.42
NIPAL3-201ENST00000003912 TSHZ2Q9NRE2 1034 aa12.43□□□□□ -0.42
NIPAL3-201ENST00000003912 DISP3Q9P2K9 1392 aa12.43□□□□□ -0.42
NIPAL3-201ENST00000003912 NUCB2P80303 420 aa12.43□□□□□ -0.42
NIPAL3-201ENST00000003912 BICD2Q8TD16 824 aa12.43□□□□□ -0.42
NIPAL3-201ENST00000003912 TPM3P06753 285 aa12.42□□□□□ -0.42
NIPAL3-201ENST00000003912 A0A087WZG4 1122 aa12.42□□□□□ -0.42
NIPAL3-201ENST00000003912 TPM1P09493 284 aa12.42□□□□□ -0.42
NIPAL3-201ENST00000003912 METTL24Q5JXM2 366 aa12.42□□□□□ -0.42
NIPAL3-201ENST00000003912 TMOD2Q9NZR1 351 aa12.42□□□□□ -0.42
NIPAL3-201ENST00000003912 NEO1Q92859 1461 aa12.42□□□□□ -0.42
NIPAL3-201ENST00000003912 ANKRD20A12PQ8NF67 263 aa12.42□□□□□ -0.42
NIPAL3-201ENST00000003912 C8orf37Q96NL8 207 aa12.42□□□□□ -0.42
NIPAL3-201ENST00000003912 RAI14Q9P0K7 980 aa12.42□□□□□ -0.42
NIPAL3-201ENST00000003912 ZCRB1Q8TBF4 217 aaKnown RBP12.42□□□□□ -0.42
NIPAL3-201ENST00000003912 CCDC85AQ96PX6 553 aaPredicted RBP12.42□□□□□ -0.42
NIPAL3-201ENST00000003912 PUS7Q96PZ0 661 aaKnown RBP12.42□□□□□ -0.42
NIPAL3-201ENST00000003912 TRMT112Q9UI30 125 aaKnown RBP12.42□□□□□ -0.42
NIPAL3-201ENST00000003912 C11orf95C9JLR9 678 aaPredicted RBP12.41□□□□□ -0.42
NIPAL3-201ENST00000003912 BCL11BQ9C0K0 894 aaPredicted RBP12.41□□□□□ -0.42
NIPAL3-201ENST00000003912 IFIT1P09914 478 aaKnown RBP12.41□□□□□ -0.42
NIPAL3-201ENST00000003912 CAVIN4Q5BKX8 364 aa12.41□□□□□ -0.42
NIPAL3-201ENST00000003912 LRP2BPQ9P2M1 347 aa12.41□□□□□ -0.42
NIPAL3-201ENST00000003912 RPGRQ92834 1020 aaKnown RBP12.41□□□□□ -0.42
NIPAL3-201ENST00000003912 CHMP5Q9NZZ3 219 aa12.41□□□□□ -0.42
NIPAL3-201ENST00000003912 ATP7AQ04656 1500 aa12.4□□□□□ -0.42
NIPAL3-201ENST00000003912 KCNA6P17658 529 aa12.4□□□□□ -0.42
NIPAL3-201ENST00000003912 ATP2B2Q01814 1243 aa12.4□□□□□ -0.42
NIPAL3-201ENST00000003912 MCM2P49736 904 aa12.4□□□□□ -0.42
NIPAL3-201ENST00000003912 ZSCAN29Q8IWY8 852 aaPredicted RBP12.4□□□□□ -0.42
NIPAL3-201ENST00000003912 NOC3LQ8WTT2 800 aaKnown RBP12.4□□□□□ -0.42
NIPAL3-201ENST00000003912 FOSBP53539 338 aa12.4□□□□□ -0.42
NIPAL3-201ENST00000003912 DNAAF4Q8WXU2 420 aa12.4□□□□□ -0.42
NIPAL3-201ENST00000003912 TRPM2O94759 1503 aa12.4□□□□□ -0.42
NIPAL3-201ENST00000003912 RALGAPBQ86X10 1494 aa12.4□□□□□ -0.43
NIPAL3-201ENST00000003912 IFIT5Q13325 482 aaKnown RBP12.4□□□□□ -0.43
NIPAL3-201ENST00000003912 CTNNA3Q9UI47 895 aa12.39□□□□□ -0.43
NIPAL3-201ENST00000003912 SLC4A3P48751 1232 aa12.39□□□□□ -0.43
NIPAL3-201ENST00000003912 PRAG1Q86YV5 1406 aa12.39□□□□□ -0.43
NIPAL3-201ENST00000003912 SMARCC1Q92922 1105 aaPredicted RBP12.39□□□□□ -0.43
NIPAL3-201ENST00000003912 CCDC73Q6ZRK6 1079 aa12.39□□□□□ -0.43
NIPAL3-201ENST00000003912 CFAP43Q8NDM7 1665 aa12.39□□□□□ -0.43
NIPAL3-201ENST00000003912 SNRPA1P09661 255 aaKnown RBP12.39□□□□□ -0.43
NIPAL3-201ENST00000003912 DDB1Q16531 1140 aa12.39□□□□□ -0.43
NIPAL3-201ENST00000003912 ANKIB1Q9P2G1 1089 aa12.39□□□□□ -0.43
NIPAL3-201ENST00000003912 RAB11FIP3O75154 756 aa12.38□□□□□ -0.43
NIPAL3-201ENST00000003912 CCDC184Q52MB2 194 aa12.38□□□□□ -0.43
NIPAL3-201ENST00000003912 TMEM57Q8N5G2 664 aa12.38□□□□□ -0.43
NIPAL3-201ENST00000003912 KIF1BPQ96EK5 621 aa12.38□□□□□ -0.43
NIPAL3-201ENST00000003912 RFC4P35249 363 aa12.38□□□□□ -0.43
NIPAL3-201ENST00000003912 CHD1LQ86WJ1 897 aa12.38□□□□□ -0.43
NIPAL3-201ENST00000003912 EIF2AK4Q9P2K8 1649 aaKnown RBP12.38□□□□□ -0.43
NIPAL3-201ENST00000003912 TDO2P48775 406 aa12.38□□□□□ -0.43
NIPAL3-201ENST00000003912 ANKRD18BA2A2Z9 1011 aa12.37□□□□□ -0.43
NIPAL3-201ENST00000003912 PDCP20941 246 aa12.37□□□□□ -0.43
NIPAL3-201ENST00000003912 FANCIQ9NVI1 1328 aa12.37□□□□□ -0.43
NIPAL3-201ENST00000003912 ANKRD1Q15327 319 aa12.37□□□□□ -0.43
NIPAL3-201ENST00000003912 HSP90AB2PQ58FF8 381 aa12.37□□□□□ -0.43
NIPAL3-201ENST00000003912 PPP1R42Q7Z4L9 355 aa12.37□□□□□ -0.43
NIPAL3-201ENST00000003912 IL1RAPL2Q9NP60 686 aa12.37□□□□□ -0.43
NIPAL3-201ENST00000003912 IDH1O75874 414 aaKnown RBP12.37□□□□□ -0.43
NIPAL3-201ENST00000003912 NEK4P51957 841 aa12.37□□□□□ -0.43
NIPAL3-201ENST00000003912 RABEP1Q15276 862 aa12.37□□□□□ -0.43
NIPAL3-201ENST00000003912 PTPRCP08575 1304 aa12.37□□□□□ -0.43
NIPAL3-201ENST00000003912 SSH1Q8WYL5 1049 aa12.37□□□□□ -0.43
NIPAL3-201ENST00000003912 ABCF2Q9UG63 623 aa12.37□□□□□ -0.43
NIPAL3-201ENST00000003912 CYP46A1Q9Y6A2 500 aa12.37□□□□□ -0.43
NIPAL3-201ENST00000003912 IL2RBP14784 551 aa12.36□□□□□ -0.43
NIPAL3-201ENST00000003912 PCMTD1Q96MG8 357 aaPredicted RBP12.36□□□□□ -0.43
NIPAL3-201ENST00000003912 ZBTB3Q9H5J0 574 aa12.36□□□□□ -0.43
NIPAL3-201ENST00000003912 CCDC69A6NI79 296 aa12.36□□□□□ -0.43
NIPAL3-201ENST00000003912 TRIM22Q8IYM9 498 aa12.36□□□□□ -0.43
NIPAL3-201ENST00000003912 ZFYVE16Q7Z3T8 1539 aa12.36□□□□□ -0.43
NIPAL3-201ENST00000003912 AIDAQ96BJ3 306 aa12.36□□□□□ -0.43
NIPAL3-201ENST00000003912 SLC5A1P13866 664 aa12.35□□□□□ -0.43
NIPAL3-201ENST00000003912 ZNF287Q9HBT7 754 aa12.35□□□□□ -0.43
NIPAL3-201ENST00000003912 YTHDC2Q9H6S0 1430 aaKnown RBP12.35□□□□□ -0.43
NIPAL3-201ENST00000003912 MAP4K4O95819 1239 aaPredicted RBP12.35□□□□□ -0.43
NIPAL3-201ENST00000003912 RARSP54136 660 aaKnown RBP12.35□□□□□ -0.43
NIPAL3-201ENST00000003912 FLIIQ13045 1269 aa12.35□□□□□ -0.43
NIPAL3-201ENST00000003912 CDC5LQ99459 802 aaKnown RBP12.35□□□□□ -0.43
NIPAL3-201ENST00000003912 FLT4P35916 1363 aa12.35□□□□□ -0.43
NIPAL3-201ENST00000003912 GPTP24298 496 aa12.35□□□□□ -0.43
NIPAL3-201ENST00000003912 R3HCC1Q9Y3T6 440 aaKnown RBP12.35□□□□□ -0.43
NIPAL3-201ENST00000003912 ABCC1P33527 1531 aa12.35□□□□□ -0.43
NIPAL3-201ENST00000003912 NPATQ14207 1427 aa12.35□□□□□ -0.43
NIPAL3-201ENST00000003912 IL16Q14005 1332 aa12.35□□□□□ -0.43
NIPAL3-201ENST00000003912 AKAP4Q5JQC9 854 aa12.34□□□□□ -0.43
NIPAL3-201ENST00000003912 CABLES1Q8TDN4 633 aa12.34□□□□□ -0.43
NIPAL3-201ENST00000003912 CWC25Q9NXE8 425 aaPredicted RBP12.34□□□□□ -0.43
NIPAL3-201ENST00000003912 NKTRP30414 1462 aaKnown RBP12.34□□□□□ -0.43
NIPAL3-201ENST00000003912 CFAP74Q9C0B2 1584 aa12.34□□□□□ -0.43
NIPAL3-201ENST00000003912 UBAC1Q9BSL1 405 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms