RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 DHX40Q8IX18 779 aaKnown RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 NATD1Q8N6N6 113 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 PRELID2Q8N945 189 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 OR10H5Q8NGA6 315 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ANKS1AQ92625 1134 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 IRF7Q92985 503 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 SERPINB11Q96P15 392 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 TMED9Q9BVK6 235 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ADAM7Q9H2U9 754 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 DENND2DQ9H6A0 471 aaPredicted RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ZFP14Q9HCL3 533 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 POLR3BQ9NW08 1133 aaPredicted RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 GPR83Q9NYM4 423 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 C3orf18Q9UK00 162 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 KCND3Q9UK17 655 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 VPS28Q9UK41 221 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 BARX2Q9UMQ3 279 aaPredicted RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 DHRS7Q9Y394 339 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 OR10H1Q9Y4A9 318 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 EXPH5Q8NEV8 1989 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 DSCAMO60469 2012 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 UMODL1Q5DID0 1318 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ATXN2Q99700 1313 aaKnown RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ORC5O43913 435 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 SYNGR4O95473 234 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 NADKO95544 446 aaPredicted RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 PAHP00439 452 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 CYP11A1P05108 521 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 NUDT1P36639 197 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 FDFT1P37268 417 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 SERPINB9P50453 376 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 NDUFA8P51970 172 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 SMAGPQ0VAQ4 97 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 PIGHQ14442 188 aaPredicted RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 LIPNQ5VXI9 398 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 PI16Q6UXB8 463 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 SLC29A4Q7RTT9 530 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 WDR49Q8IV35 697 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 PDPRQ8NCN5 879 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 XAGE3Q8WTP9 111 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 C9orf72Q96LT7 481 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ECSITQ9BQ95 431 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 SIK2Q9H0K1 926 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 IP6K2Q9UHH9 426 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 CYP8B1Q9UNU6 501 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ABCA10Q8WWZ4 1543 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 EPG5Q9HCE0 2579 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 EML5Q05BV3 1969 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ATP6V1G2O95670 118 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 CRYZL1O95825 349 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 PRH1P02810 166 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 GLI1P08151 1106 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 AKR1B1P15121 316 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF12P17014 697 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 KLRC1P26715 233 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ACSL1P33121 698 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 SMSP52788 366 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 CDH6P55285 790 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 PDE7AQ13946 482 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ELOCQ15369 112 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 CA9Q16790 459 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 SYDE2Q5VT97 1194 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 DNAJC14Q6Y2X3 702 aaPredicted RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 AHSA2Q719I0 299 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 SV2AQ7L0J3 742 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 KBTBD2Q8IY47 623 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ADGRG2Q8IZP9 1017 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 SLC30A5Q8TAD4 765 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 TATDN2Q93075 761 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 CCDC74AQ96AQ1 378 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 AKT1S1Q96B36 256 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ZDHHC12Q96GR4 267 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 BOD1Q96IK1 185 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 FER1L6-AS2Q96M78 137 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF570Q96NI8 536 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 BDH2Q9BUT1 245 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 RUSC1Q9BVN2 902 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 TMED5Q9Y3A6 229 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 LAMA4Q16363 1823 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 NAV1Q8NEY1 1877 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 FAM171A2A8MVW0 826 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 KCNA5P22460 613 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 AMPD1P23109 780 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 SDC2P34741 201 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 THPOP40225 353 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 STK19P49842 368 aaPredicted RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 FOXM1Q08050 763 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 FUT2Q10981 343 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 PTK7Q13308 1070 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF268Q14587 947 aaPredicted RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 RNASEH2BQ5TBB1 312 aaKnown RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 C6orf89Q6UWU4 347 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 CEP97Q8IW35 865 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 DCUN1D3Q8IWE4 304 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 GRAMD1CQ8IYS0 662 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 IP6K3Q96PC2 410 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 GANQ9H2C0 597 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 SLC35C2Q9NQQ7 365 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 SEMA3GQ9NS98 782 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 FAM217BQ9NTX9 383 aaPredicted RBP2.77□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms