RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 IGFBP5P24593 272 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 MAP2K4P45985 399 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 PLA2G16P53816 162 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 FPGSQ05932 587 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 ILF2Q12905 390 aaKnown RBP10.96□□□□□ -0.65
CLN3-244ENST00000636147 LCP2Q13094 533 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 NPTX1Q15818 432 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 SZRD1Q7Z422 152 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 RETREG3Q86VR2 466 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 TTC30BQ8N4P2 665 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 OMA1Q96E52 524 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 C3orf30Q96M34 536 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 SEZ6LQ9BYH1 1024 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 GPR63Q9BZJ6 419 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 CMTM6Q9NX76 183 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 GDAP2Q9NXN4 497 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 AASSQ9UDR5 926 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 SAMHD1Q9Y3Z3 626 aaKnown RBP10.96□□□□□ -0.65
CLN3-244ENST00000636147 TCRBV3S1A0A5B6 114 aa10.96□□□□□ -0.66
CLN3-244ENST00000636147 SERPINB7O75635 380 aa10.96□□□□□ -0.66
CLN3-244ENST00000636147 PRKD3O94806 890 aa10.96□□□□□ -0.66
CLN3-244ENST00000636147 CNPP09543 421 aaKnown RBP10.96□□□□□ -0.66
CLN3-244ENST00000636147 MBL2P11226 248 aaPredicted RBP10.96□□□□□ -0.66
CLN3-244ENST00000636147 TKTP29401 623 aaKnown RBP10.96□□□□□ -0.66
CLN3-244ENST00000636147 TMBIM6P55061 237 aa10.96□□□□□ -0.66
CLN3-244ENST00000636147 OR4D2P58180 307 aa10.96□□□□□ -0.66
CLN3-244ENST00000636147 CD300CQ08708 224 aa10.96□□□□□ -0.66
CLN3-244ENST00000636147 C10orf120Q5SQS8 335 aa10.96□□□□□ -0.66
CLN3-244ENST00000636147 INTS11Q5TA45 600 aaKnown RBP10.96□□□□□ -0.66
CLN3-244ENST00000636147 SDHAF4Q5VUM1 108 aa10.96□□□□□ -0.66
CLN3-244ENST00000636147 ZNF621Q6ZSS3 439 aa10.96□□□□□ -0.66
CLN3-244ENST00000636147 RAVER1Q8IY67 606 aaKnown RBP10.96□□□□□ -0.66
CLN3-244ENST00000636147 OR9Q1Q8NGQ5 310 aa10.96□□□□□ -0.66
CLN3-244ENST00000636147 CNIH3Q8TBE1 160 aa10.96□□□□□ -0.66
CLN3-244ENST00000636147 ITCHQ96J02 903 aa10.96□□□□□ -0.66
CLN3-244ENST00000636147 B3GALT6Q96L58 329 aa10.96□□□□□ -0.66
CLN3-244ENST00000636147 CHCHD6Q9BRQ6 235 aa10.96□□□□□ -0.66
CLN3-244ENST00000636147 SLC39A8Q9C0K1 460 aa10.96□□□□□ -0.66
CLN3-244ENST00000636147 ADAMTS10Q9H324 1103 aa10.96□□□□□ -0.66
CLN3-244ENST00000636147 ZNF556Q9HAH1 456 aa10.96□□□□□ -0.66
CLN3-244ENST00000636147 EIF2B4Q9UI10 523 aaKnown RBP10.96□□□□□ -0.66
CLN3-244ENST00000636147 USP22Q9UPT9 525 aa10.96□□□□□ -0.66
CLN3-244ENST00000636147 CORINQ9Y5Q5 1042 aa10.96□□□□□ -0.66
CLN3-244ENST00000636147 MICAL3Q7RTP6 2002 aa10.96□□□□□ -0.66
CLN3-244ENST00000636147 C2orf81A6NN90 581 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 BCAS1O75363 584 aaPredicted RBP10.95□□□□□ -0.66
CLN3-244ENST00000636147 BEST1O76090 585 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 POMCP01189 267 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 CD36P16671 472 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 PROZP22891 400 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 SLC6A2P23975 617 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 AQP1P29972 269 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 HPCAL1P37235 193 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 NR4A2P43354 598 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 SKIV2LQ15477 1246 aaKnown RBP10.95□□□□□ -0.66
CLN3-244ENST00000636147 LPCAT1Q8NF37 534 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 ANKRD49Q8WVL7 239 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 ZUFSPQ96AP4 578 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 REXO5Q96IC2 774 aaKnown RBP10.95□□□□□ -0.66
CLN3-244ENST00000636147 NANOGQ9H9S0 305 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 FBXW11Q9UKB1 542 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 CCDC162PA2VCL2 907 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 RGS10O43665 173 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 GABBR2O75899 941 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 SERPINF2P08697 491 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 RAP2AP10114 183 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 GTF2E2P29084 291 aaKnown RBP10.95□□□□□ -0.66
CLN3-244ENST00000636147 APLP1P51693 650 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 IL2P60568 153 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 HERVK_113P63132 956 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 CSTF3Q12996 717 aaKnown RBP10.95□□□□□ -0.66
CLN3-244ENST00000636147 PAFAH1B3Q15102 231 aaKnown RBP10.95□□□□□ -0.66
CLN3-244ENST00000636147 TAB1Q15750 504 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 ARMCX4Q5H9R4 360 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 C6orf141Q5SZD1 244 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 TSTD2Q5T7W7 516 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 DLK2Q6UY11 383 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 CYP4V2Q6ZWL3 525 aaPredicted RBP10.95□□□□□ -0.66
CLN3-244ENST00000636147 TAC4Q86UU9 113 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 ZFP90Q8TF47 636 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 STON2Q8WXE9 905 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 MTERF3Q96E29 417 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 NSMCE3Q96MG7 304 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 FAM193BQ96PV7 902 aaPredicted RBP10.95□□□□□ -0.66
CLN3-244ENST00000636147 OR52E6Q96RD3 313 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 RANBP9Q96S59 729 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 GPR21Q99679 349 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 RBM4BQ9BQ04 359 aaKnown RBP10.95□□□□□ -0.66
CLN3-244ENST00000636147 RBM4Q9BWF3 364 aaKnown RBP10.95□□□□□ -0.66
CLN3-244ENST00000636147 ERVK-6Q9BXR3 956 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 LRRC3Q9BY71 257 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 TRIM54Q9BYV2 358 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 AP5M1Q9H0R1 490 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 MAGEE1Q9HCI5 957 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 SATB2Q9UPW6 733 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 DNAJC15Q9Y5T4 150 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 PMF1-BGLAPU3KQ54 211 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 A0A1W2PP18 115 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 hCG_2039718K7EN88 272 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 AIREO43918 545 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms