RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 UGT1A4P22310 534 aa17.9■□□□□ 0.46
CLN3-239ENST00000628023 UGT1A3P35503 534 aa17.9■□□□□ 0.46
CLN3-239ENST00000628023 UGT1A5P35504 534 aa17.9■□□□□ 0.46
CLN3-239ENST00000628023 TUBB2AQ13885 445 aa17.9■□□□□ 0.46
CLN3-239ENST00000628023 GTF2H3Q13889 308 aa17.9■□□□□ 0.46
CLN3-239ENST00000628023 ZRANB3Q5FWF4 1079 aa17.9■□□□□ 0.46
CLN3-239ENST00000628023 PCID2Q5JVF3 399 aa17.9■□□□□ 0.46
CLN3-239ENST00000628023 LDLRAP1Q5SW96 308 aa17.9■□□□□ 0.46
CLN3-239ENST00000628023 ZNF648Q5T619 568 aaPredicted RBP17.9■□□□□ 0.46
CLN3-239ENST00000628023 ZNF534Q76KX8 674 aa17.9■□□□□ 0.46
CLN3-239ENST00000628023 ZNF572Q7Z3I7 529 aaPredicted RBP17.9■□□□□ 0.46
CLN3-239ENST00000628023 MAATS1Q7Z4T9 603 aa17.9■□□□□ 0.46
CLN3-239ENST00000628023 GALNT13Q8IUC8 556 aa17.9■□□□□ 0.46
CLN3-239ENST00000628023 NAT8LQ8N9F0 302 aa17.9■□□□□ 0.46
CLN3-239ENST00000628023 MCUQ8NE86 351 aa17.9■□□□□ 0.46
CLN3-239ENST00000628023 DTX3LQ8TDB6 740 aa17.9■□□□□ 0.46
CLN3-239ENST00000628023 ULK4Q96C45 1275 aa17.9■□□□□ 0.46
CLN3-239ENST00000628023 TBATAQ96M53 351 aa17.9■□□□□ 0.46
CLN3-239ENST00000628023 TTC25Q96NG3 672 aa17.9■□□□□ 0.46
CLN3-239ENST00000628023 C19orf43Q9BQ61 176 aa17.9■□□□□ 0.46
CLN3-239ENST00000628023 TUBB2BQ9BVA1 445 aa17.9■□□□□ 0.46
CLN3-239ENST00000628023 ZCCHC2Q9C0B9 1178 aaKnown RBP17.9■□□□□ 0.46
CLN3-239ENST00000628023 OR2AG1Q9H205 316 aa17.9■□□□□ 0.46
CLN3-239ENST00000628023 UGT1A7Q9HAW7 530 aa17.9■□□□□ 0.46
CLN3-239ENST00000628023 UGT1A10Q9HAW8 530 aa17.9■□□□□ 0.46
CLN3-239ENST00000628023 UGT1A8Q9HAW9 530 aa17.9■□□□□ 0.46
CLN3-239ENST00000628023 SYBUQ9NX95 663 aa17.9■□□□□ 0.46
CLN3-239ENST00000628023 GPSM3Q9Y4H4 160 aa17.9■□□□□ 0.46
CLN3-239ENST00000628023 ACACAQ13085 2346 aa17.9■□□□□ 0.46
CLN3-239ENST00000628023 PLXNB3Q9ULL4 1909 aa17.9■□□□□ 0.46
CLN3-239ENST00000628023 FAM187AA6NFU0 413 aa17.89■□□□□ 0.45
CLN3-239ENST00000628023 EFCAB8A8MWE9 144 aa17.89■□□□□ 0.45
CLN3-239ENST00000628023 GAPDHSO14556 408 aaPredicted RBP17.89■□□□□ 0.45
CLN3-239ENST00000628023 MTX2O75431 263 aa17.89■□□□□ 0.45
CLN3-239ENST00000628023 ANXA6P08133 673 aa17.89■□□□□ 0.45
CLN3-239ENST00000628023 MLNP12872 115 aa17.89■□□□□ 0.45
CLN3-239ENST00000628023 AKT1P31749 480 aa17.89■□□□□ 0.45
CLN3-239ENST00000628023 MRPS25P82663 173 aaKnown RBP17.89■□□□□ 0.45
CLN3-239ENST00000628023 NFATC2Q13469 925 aa17.89■□□□□ 0.45
CLN3-239ENST00000628023 GPRC6AQ5T6X5 926 aa17.89■□□□□ 0.45
CLN3-239ENST00000628023 TSTD2Q5T7W7 516 aa17.89■□□□□ 0.45
CLN3-239ENST00000628023 RNASEH2BQ5TBB1 312 aaKnown RBP17.89■□□□□ 0.45
CLN3-239ENST00000628023 KANSL1Q7Z3B3 1105 aa17.89■□□□□ 0.45
CLN3-239ENST00000628023 SNX20Q7Z614 316 aa17.89■□□□□ 0.45
CLN3-239ENST00000628023 GKN2Q86XP6 184 aa17.89■□□□□ 0.45
CLN3-239ENST00000628023 SLC25A45Q8N413 288 aa17.89■□□□□ 0.45
CLN3-239ENST00000628023 MNS1Q8NEH6 495 aa17.89■□□□□ 0.45
CLN3-239ENST00000628023 PTCD2Q8WV60 388 aaKnown RBP17.89■□□□□ 0.45
CLN3-239ENST00000628023 SNF8Q96H20 258 aa17.89■□□□□ 0.45
CLN3-239ENST00000628023 SERPINB12Q96P63 405 aa17.89■□□□□ 0.45
CLN3-239ENST00000628023 OR2M4Q96R27 311 aa17.89■□□□□ 0.45
CLN3-239ENST00000628023 DUSP23Q9BVJ7 150 aa17.89■□□□□ 0.45
CLN3-239ENST00000628023 TMEM168Q9H0V1 697 aa17.89■□□□□ 0.45
CLN3-239ENST00000628023 TRIM39Q9HCM9 518 aa17.89■□□□□ 0.45
CLN3-239ENST00000628023 SMOXQ9NWM0 555 aa17.89■□□□□ 0.45
CLN3-239ENST00000628023 SAMD15Q9P1V8 674 aa17.89■□□□□ 0.45
CLN3-239ENST00000628023 ATXN10Q9UBB4 475 aa17.89■□□□□ 0.45
CLN3-239ENST00000628023 DKK4Q9UBT3 224 aa17.89■□□□□ 0.45
CLN3-239ENST00000628023 ZNHIT2Q9UHR6 403 aa17.89■□□□□ 0.45
CLN3-239ENST00000628023 PCDHGA1Q9Y5H4 931 aa17.89■□□□□ 0.45
CLN3-239ENST00000628023 MRFAP1Q9Y605 127 aa17.89■□□□□ 0.45
CLN3-239ENST00000628023 CSNK1G3Q9Y6M4 447 aa17.89■□□□□ 0.45
CLN3-239ENST00000628023 SPEGQ15772 3267 aa17.89■□□□□ 0.45
CLN3-239ENST00000628023 ZNF106Q9H2Y7 1883 aaKnown RBP17.88■□□□□ 0.45
CLN3-239ENST00000628023 LRP4O75096 1905 aa17.88■□□□□ 0.45
CLN3-239ENST00000628023 RAD51CO43502 376 aa17.88■□□□□ 0.45
CLN3-239ENST00000628023 AVILO75366 819 aa17.88■□□□□ 0.45
CLN3-239ENST00000628023 CELA2BP08218 269 aaPredicted RBP17.88■□□□□ 0.45
CLN3-239ENST00000628023 PRAMEP78395 509 aa17.88■□□□□ 0.45
CLN3-239ENST00000628023 XIAPP98170 497 aa17.88■□□□□ 0.45
CLN3-239ENST00000628023 ILF3Q12906 894 aaKnown RBP eCLIP17.88■□□□□ 0.45
CLN3-239ENST00000628023 PEX6Q13608 980 aa17.88■□□□□ 0.45
CLN3-239ENST00000628023 SMAD1Q15797 465 aaKnown RBP17.88■□□□□ 0.45
CLN3-239ENST00000628023 DEFB133Q30KQ1 61 aa17.88■□□□□ 0.45
CLN3-239ENST00000628023 CRTC3Q6UUV7 619 aa17.88■□□□□ 0.45
CLN3-239ENST00000628023 DHRS13Q6UX07 377 aa17.88■□□□□ 0.45
CLN3-239ENST00000628023 TAS2R42Q7RTR8 314 aa17.88■□□□□ 0.45
CLN3-239ENST00000628023 TAF8Q7Z7C8 310 aa17.88■□□□□ 0.45
CLN3-239ENST00000628023 HOOK3Q86VS8 718 aa17.88■□□□□ 0.45
CLN3-239ENST00000628023 TMPRSS12Q86WS5 348 aa17.88■□□□□ 0.45
CLN3-239ENST00000628023 DDHD1Q8NEL9 900 aa17.88■□□□□ 0.45
CLN3-239ENST00000628023 MDM1Q8TC05 714 aa17.88■□□□□ 0.45
CLN3-239ENST00000628023 SCG3Q8WXD2 468 aaKnown RBP17.88■□□□□ 0.45
CLN3-239ENST00000628023 TBRG4Q969Z0 631 aaKnown RBP eCLIP17.88■□□□□ 0.45
CLN3-239ENST00000628023 CDKN2AIPNLQ96HQ2 116 aa17.88■□□□□ 0.45
CLN3-239ENST00000628023 CNDP2Q96KP4 475 aaKnown RBP17.88■□□□□ 0.45
CLN3-239ENST00000628023 GSDMCQ9BYG8 508 aa17.88■□□□□ 0.45
CLN3-239ENST00000628023 CLPBQ9H078 707 aa17.88■□□□□ 0.45
CLN3-239ENST00000628023 FAM96AQ9H5X1 160 aa17.88■□□□□ 0.45
CLN3-239ENST00000628023 RMI1Q9H9A7 625 aa17.88■□□□□ 0.45
CLN3-239ENST00000628023 CHRAC1Q9NRG0 131 aa17.88■□□□□ 0.45
CLN3-239ENST00000628023 NLGN3Q9NZ94 848 aa17.88■□□□□ 0.45
CLN3-239ENST00000628023 SLC2A6Q9UGQ3 507 aa17.88■□□□□ 0.45
CLN3-239ENST00000628023 RIMKLBQ9ULI2 386 aa17.88■□□□□ 0.45
CLN3-239ENST00000628023 KNTC1P50748 2209 aa17.88■□□□□ 0.45
CLN3-239ENST00000628023 FREM2Q5SZK8 3169 aa17.87■□□□□ 0.45
CLN3-239ENST00000628023 TRABD2BA6NFA1 517 aa17.87■□□□□ 0.45
CLN3-239ENST00000628023 GPR89AB7ZAQ6 455 aa17.87■□□□□ 0.45
CLN3-239ENST00000628023 LMO7DNF2Z398 122 aa17.87■□□□□ 0.45
CLN3-239ENST00000628023 H7C0S8 307 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms