RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 TNFRSF10CO14798 259 aa19.51■□□□□ 0.71
UPF3A-211ENST00000618700 MTX2O75431 263 aa19.51■□□□□ 0.71
UPF3A-211ENST00000618700 CEACAM5P06731 702 aa19.51■□□□□ 0.71
UPF3A-211ENST00000618700 TGM1P22735 817 aa19.51■□□□□ 0.71
UPF3A-211ENST00000618700 ACRV1P26436 265 aa19.51■□□□□ 0.71
UPF3A-211ENST00000618700 IRX4P78413 519 aa19.51■□□□□ 0.71
UPF3A-211ENST00000618700 SPEM2Q0P670 501 aa19.51■□□□□ 0.71
UPF3A-211ENST00000618700 SEMA3AQ14563 771 aa19.51■□□□□ 0.71
UPF3A-211ENST00000618700 DBN1Q16643 649 aa19.51■□□□□ 0.71
UPF3A-211ENST00000618700 CEP128Q6ZU80 1094 aa19.51■□□□□ 0.71
UPF3A-211ENST00000618700 ADGRG6Q86SQ4 1221 aa19.51■□□□□ 0.71
UPF3A-211ENST00000618700 SERPINA9Q86WD7 417 aa19.51■□□□□ 0.71
UPF3A-211ENST00000618700 PYROXD1Q8WU10 500 aa19.51■□□□□ 0.71
UPF3A-211ENST00000618700 OR1E3Q8WZA6 343 aa19.51■□□□□ 0.71
UPF3A-211ENST00000618700 TBRG4Q969Z0 631 aaKnown RBP eCLIP19.51■□□□□ 0.71
UPF3A-211ENST00000618700 PDXPQ96GD0 296 aa19.51■□□□□ 0.71
UPF3A-211ENST00000618700 SCARF2Q96GP6 870 aaPredicted RBP19.51■□□□□ 0.71
UPF3A-211ENST00000618700 TRIM39Q9HCM9 518 aa19.51■□□□□ 0.71
UPF3A-211ENST00000618700 ARFGAP3Q9NP61 516 aa19.51■□□□□ 0.71
UPF3A-211ENST00000618700 SEMA4GQ9NTN9 838 aa19.51■□□□□ 0.71
UPF3A-211ENST00000618700 CATSPERZQ9NTU4 200 aa19.51■□□□□ 0.71
UPF3A-211ENST00000618700 IL1RAPL1Q9NZN1 696 aa19.51■□□□□ 0.71
UPF3A-211ENST00000618700 NOL12Q9UGY1 213 aaKnown RBP eCLIP19.51■□□□□ 0.71
UPF3A-211ENST00000618700 V9GYY5 206 aaPredicted RBP19.51■□□□□ 0.71
UPF3A-211ENST00000618700 EP300Q09472 2414 aaPredicted RBP19.5■□□□□ 0.71
UPF3A-211ENST00000618700 LNP1A1A4G5 178 aa19.5■□□□□ 0.71
UPF3A-211ENST00000618700 PRSS38A1L453 326 aa19.5■□□□□ 0.71
UPF3A-211ENST00000618700 IVLP07476 585 aa19.5■□□□□ 0.71
UPF3A-211ENST00000618700 MYBL2P10244 700 aa19.5■□□□□ 0.71
UPF3A-211ENST00000618700 ENGP17813 658 aa19.5■□□□□ 0.71
UPF3A-211ENST00000618700 MAGEA4P43358 317 aa19.5■□□□□ 0.71
UPF3A-211ENST00000618700 B4GALNT1Q00973 533 aa19.5■□□□□ 0.71
UPF3A-211ENST00000618700 SF3A2Q15428 464 aaKnown RBP19.5■□□□□ 0.71
UPF3A-211ENST00000618700 CSRP2Q16527 193 aa19.5■□□□□ 0.71
UPF3A-211ENST00000618700 ZNF423Q2M1K9 1284 aa19.5■□□□□ 0.71
UPF3A-211ENST00000618700 ALG11Q2TAA5 492 aa19.5■□□□□ 0.71
UPF3A-211ENST00000618700 FASTKD1Q53R41 847 aaKnown RBP19.5■□□□□ 0.71
UPF3A-211ENST00000618700 AARS2Q5JTZ9 985 aaKnown RBP19.5■□□□□ 0.71
UPF3A-211ENST00000618700 ZNF648Q5T619 568 aaPredicted RBP19.5■□□□□ 0.71
UPF3A-211ENST00000618700 DOK6Q6PKX4 331 aa19.5■□□□□ 0.71
UPF3A-211ENST00000618700 IL27RAQ6UWB1 636 aa19.5■□□□□ 0.71
UPF3A-211ENST00000618700 ENPP7Q6UWV6 458 aa19.5■□□□□ 0.71
UPF3A-211ENST00000618700 UNC5BQ8IZJ1 945 aa19.5■□□□□ 0.71
UPF3A-211ENST00000618700 OXR1Q8N573 874 aa19.5■□□□□ 0.71
UPF3A-211ENST00000618700 GPR161Q8N6U8 529 aaKnown RBP19.5■□□□□ 0.71
UPF3A-211ENST00000618700 GPR150Q8NGU9 434 aa19.5■□□□□ 0.71
UPF3A-211ENST00000618700 CCDC97Q96F63 343 aaPredicted RBP19.5■□□□□ 0.71
UPF3A-211ENST00000618700 ZDHHC3Q9NYG2 299 aa19.5■□□□□ 0.71
UPF3A-211ENST00000618700 ATXN10Q9UBB4 475 aa19.5■□□□□ 0.71
UPF3A-211ENST00000618700 KLQ9UEF7 1012 aa19.5■□□□□ 0.71
UPF3A-211ENST00000618700 TMEM98Q9Y2Y6 226 aa19.5■□□□□ 0.71
UPF3A-211ENST00000618700 RALGAPA1Q6GYQ0 2036 aa19.49■□□□□ 0.71
UPF3A-211ENST00000618700 GOLGA8KD6RF30 607 aa19.49■□□□□ 0.71
UPF3A-211ENST00000618700 GOLGA8TH3BQL2 631 aa19.49■□□□□ 0.71
UPF3A-211ENST00000618700 CD3EAPO15446 510 aaKnown RBP19.49■□□□□ 0.71
UPF3A-211ENST00000618700 VEGFDO43915 354 aa19.49■□□□□ 0.71
UPF3A-211ENST00000618700 DNAJC6O75061 913 aa19.49■□□□□ 0.71
UPF3A-211ENST00000618700 FUCA1P04066 466 aa19.49■□□□□ 0.71
UPF3A-211ENST00000618700 CSF2P04141 144 aa19.49■□□□□ 0.71
UPF3A-211ENST00000618700 SYPP08247 313 aa19.49■□□□□ 0.71
UPF3A-211ENST00000618700 NME1P15531 152 aaKnown RBP19.49■□□□□ 0.71
UPF3A-211ENST00000618700 POLD2P49005 469 aa19.49■□□□□ 0.71
UPF3A-211ENST00000618700 SRP54P61011 504 aaKnown RBP19.49■□□□□ 0.71
UPF3A-211ENST00000618700 ITIH4Q14624 930 aa19.49■□□□□ 0.71
UPF3A-211ENST00000618700 SMAD1Q15797 465 aaKnown RBP19.49■□□□□ 0.71
UPF3A-211ENST00000618700 ERCC6LQ2NKX8 1250 aa19.49■□□□□ 0.71
UPF3A-211ENST00000618700 TYSND1Q2T9J0 566 aa19.49■□□□□ 0.71
UPF3A-211ENST00000618700 LYPLAL1Q5VWZ2 237 aa19.49■□□□□ 0.71
UPF3A-211ENST00000618700 NEPROQ6NW34 567 aa19.49■□□□□ 0.71
UPF3A-211ENST00000618700 TRMT10BQ6PF06 316 aaKnown RBP19.49■□□□□ 0.71
UPF3A-211ENST00000618700 CERS6Q6ZMG9 384 aa19.49■□□□□ 0.71
UPF3A-211ENST00000618700 TAS2R42Q7RTR8 314 aa19.49■□□□□ 0.71
UPF3A-211ENST00000618700 DCLK2Q8N568 766 aa19.49■□□□□ 0.71
UPF3A-211ENST00000618700 GSDMBQ8TAX9 411 aa19.49■□□□□ 0.71
UPF3A-211ENST00000618700 GDAP1Q8TB36 358 aa19.49■□□□□ 0.71
UPF3A-211ENST00000618700 CERS2Q96G23 380 aa19.49■□□□□ 0.71
UPF3A-211ENST00000618700 C9orf72Q96LT7 481 aa19.49■□□□□ 0.71
UPF3A-211ENST00000618700 ELF4Q99607 663 aaPredicted RBP19.49■□□□□ 0.71
UPF3A-211ENST00000618700 COPS8Q99627 209 aa19.49■□□□□ 0.71
UPF3A-211ENST00000618700 OR2AG1Q9H205 316 aa19.49■□□□□ 0.71
UPF3A-211ENST00000618700 C20orf96Q9NUD7 363 aaPredicted RBP19.49■□□□□ 0.71
UPF3A-211ENST00000618700 KLF15Q9UIH9 416 aa19.49■□□□□ 0.71
UPF3A-211ENST00000618700 DGKBQ9Y6T7 804 aa19.49■□□□□ 0.71
UPF3A-211ENST00000618700 TMEM131Q92545 1883 aa19.49■□□□□ 0.71
UPF3A-211ENST00000618700 ZNF292O60281 2723 aa19.49■□□□□ 0.71
UPF3A-211ENST00000618700 GPR89AB7ZAQ6 455 aa19.48■□□□□ 0.71
UPF3A-211ENST00000618700 ASMTLO95671 621 aa19.48■□□□□ 0.71
UPF3A-211ENST00000618700 GSTA2P09210 222 aa19.48■□□□□ 0.71
UPF3A-211ENST00000618700 GPR89BP0CG08 455 aa19.48■□□□□ 0.71
UPF3A-211ENST00000618700 ZNF8P17098 575 aaPredicted RBP19.48■□□□□ 0.71
UPF3A-211ENST00000618700 OGNP20774 298 aaKnown RBP19.48■□□□□ 0.71
UPF3A-211ENST00000618700 RXRGP48443 463 aa19.48■□□□□ 0.71
UPF3A-211ENST00000618700 GPX6P59796 221 aa19.48■□□□□ 0.71
UPF3A-211ENST00000618700 VSNL1P62760 191 aa19.48■□□□□ 0.71
UPF3A-211ENST00000618700 TMEM115Q12893 351 aaPredicted RBP19.48■□□□□ 0.71
UPF3A-211ENST00000618700 SHBQ15464 509 aa19.48■□□□□ 0.71
UPF3A-211ENST00000618700 HLA-BQ31612 363 aa19.48■□□□□ 0.71
UPF3A-211ENST00000618700 MRNIPQ6NTE8 343 aa19.48■□□□□ 0.71
UPF3A-211ENST00000618700 WDR93Q6P2C0 686 aa19.48■□□□□ 0.71
UPF3A-211ENST00000618700 PACS1Q6VY07 963 aa19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms