RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 DAG1Q14118 895 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 ADHFE1Q8IWW8 467 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 ZNF540Q8NDQ6 660 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 FEM1CQ96JP0 617 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 BIRC8Q96P09 236 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 NODALQ96S42 347 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 RERGLQ9H628 205 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 SCUBE2Q9NQ36 999 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 TMEM181Q9P2C4 612 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 USP22Q9UPT9 525 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 A0A1W2PP18 115 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 SOCS7O14512 581 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 ZSCAN9O15535 394 aaPredicted RBP12.5□□□□□ -0.41
LIG1-221ENST00000613670 LRATO95237 230 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 FADS2O95864 444 aaKnown RBP12.5□□□□□ -0.41
LIG1-221ENST00000613670 ALDOCP09972 364 aaKnown RBP12.5□□□□□ -0.41
LIG1-221ENST00000613670 DBTP11182 482 aaKnown RBP12.5□□□□□ -0.41
LIG1-221ENST00000613670 ALOX12P18054 663 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 ACADVLP49748 655 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 ST13P50502 369 aaKnown RBP12.5□□□□□ -0.41
LIG1-221ENST00000613670 BMXP51813 675 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 ZNF846Q147U1 533 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 SIRPB2Q5JXA9 342 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 MFSD6LQ8IWD5 586 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 SLC15A4Q8N697 577 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 ARRDC4Q8NCT1 418 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 RAB2BQ8WUD1 216 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 PAAF1Q9BRP4 392 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 GSTO2Q9H4Y5 243 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 PSME2Q9UL46 239 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 RGS5O15539 181 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 XYLBO75191 536 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 MSH3P20585 1137 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 KPNA1P52294 538 aaPredicted RBP12.5□□□□□ -0.41
LIG1-221ENST00000613670 OXCT1P55809 520 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 OR4D2P58180 307 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 DNASE1L3Q13609 305 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 CYP2A13Q16696 494 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 KCTD11Q693B1 232 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 NANOGP8Q6NSW7 305 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 ISCA2Q86U28 154 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 ANKRD46Q86W74 232 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 PROSER1Q86XN7 944 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 SMG8Q8ND04 991 aaKnown RBP12.5□□□□□ -0.41
LIG1-221ENST00000613670 ZUFSPQ96AP4 578 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 SLC47A1Q96FL8 570 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 CLPBQ9H078 707 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 RPF2Q9H7B2 306 aaKnown RBP12.5□□□□□ -0.41
LIG1-221ENST00000613670 NANOGQ9H9S0 305 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 ADARB2Q9NS39 739 aaKnown RBP12.5□□□□□ -0.41
LIG1-221ENST00000613670 TRIP11Q15643 1979 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 SMIM35A0A1B0GVV1 85 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 MAFKO60675 156 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 NIPSNAP2O75323 286 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 ECI2O75521 394 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 RPP40O75818 363 aaKnown RBP12.49□□□□□ -0.41
LIG1-221ENST00000613670 CNTN5O94779 1100 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 INAQ16352 499 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 CPSF6Q16630 551 aaKnown RBP eCLIP12.49□□□□□ -0.41
LIG1-221ENST00000613670 MOGQ16653 247 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 IQSEC1Q6DN90 963 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 SPATA19Q7Z5L4 167 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 POC5Q8NA72 575 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 SIDT2Q8NBJ9 832 aaKnown RBP12.49□□□□□ -0.41
LIG1-221ENST00000613670 CAPSLQ8WWF8 208 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 PTERQ96BW5 349 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 ASIC4Q96FT7 647 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 TPD52L3Q96J77 140 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 NPLQ9BXD5 320 aaPredicted RBP12.49□□□□□ -0.41
LIG1-221ENST00000613670 TRIM54Q9BYV2 358 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 INTS10Q9NVR2 710 aaKnown RBP12.49□□□□□ -0.41
LIG1-221ENST00000613670 EVLQ9UI08 416 aaPredicted RBP12.49□□□□□ -0.41
LIG1-221ENST00000613670 DOCK5Q9H7D0 1870 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 A0A0G2JLL6 359 aaPredicted RBP12.49□□□□□ -0.41
LIG1-221ENST00000613670 BTBD19C9JJ37 291 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 MGEA5O60502 916 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 FYNP06241 537 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 RFC2P35250 354 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 MAGEA12P43365 314 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 CPT1AP50416 773 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 BCAP31P51572 246 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 CRYBB1P53674 252 aaPredicted RBP12.49□□□□□ -0.41
LIG1-221ENST00000613670 CXCL17Q6UXB2 119 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 PRRT2Q7Z6L0 340 aaPredicted RBP12.49□□□□□ -0.41
LIG1-221ENST00000613670 NKAPQ8N5F7 415 aaKnown RBP12.49□□□□□ -0.41
LIG1-221ENST00000613670 TOR3AQ9H497 397 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 PALMDQ9NP74 551 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 SLAMF8Q9P0V8 285 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.49□□□□□ -0.412e-6■□□□□ 8.3
LIG1-221ENST00000613670 SLC27A5Q9Y2P5 690 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 TPRKBQ9Y3C4 175 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 FOCADQ5VW36 1801 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 TAF1LQ8IZX4 1826 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 H0YJX3 145 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 C1RP00736 705 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 MYF6P23409 242 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 KCNC1P48547 511 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 AFF1P51825 1210 aaKnown RBP12.49□□□□□ -0.41
LIG1-221ENST00000613670 NEK2P51955 445 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 ARSFP54793 590 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms