RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 MAN2B1O00754 1011 aa14.13□□□□□ -0.15
USP39-220ENST00000613444 RHOBTB1O94844 696 aa14.13□□□□□ -0.15
USP39-220ENST00000613444 BPGMP07738 259 aa14.13□□□□□ -0.15
USP39-220ENST00000613444 CCDC166P0CW27 439 aa14.13□□□□□ -0.15
USP39-220ENST00000613444 CHRNB1P11230 501 aa14.13□□□□□ -0.15
USP39-220ENST00000613444 CLCN7P51798 805 aa14.13□□□□□ -0.15
USP39-220ENST00000613444 IRX4P78413 519 aa14.13□□□□□ -0.15
USP39-220ENST00000613444 PCLAFQ15004 111 aa14.13□□□□□ -0.15
USP39-220ENST00000613444 GPRC6AQ5T6X5 926 aa14.13□□□□□ -0.15
USP39-220ENST00000613444 MACC1Q6ZN28 852 aa14.13□□□□□ -0.15
USP39-220ENST00000613444 ZNF765Q7L2R6 523 aa14.13□□□□□ -0.15
USP39-220ENST00000613444 FSTL5Q8N475 847 aaPredicted RBP14.13□□□□□ -0.15
USP39-220ENST00000613444 AP2M1Q96CW1 435 aa14.13□□□□□ -0.15
USP39-220ENST00000613444 TTC1Q99614 292 aa14.13□□□□□ -0.15
USP39-220ENST00000613444 GPR21Q99679 349 aa14.13□□□□□ -0.15
USP39-220ENST00000613444 CCDC68Q9H2F9 335 aa14.13□□□□□ -0.15
USP39-220ENST00000613444 MBD1Q9UIS9 605 aaPredicted RBP14.13□□□□□ -0.15
USP39-220ENST00000613444 MMP17Q9ULZ9 603 aa14.13□□□□□ -0.15
USP39-220ENST00000613444 NDRG2Q9UN36 371 aaKnown RBP14.13□□□□□ -0.15
USP39-220ENST00000613444 ANKRD12Q6UB98 2062 aa14.13□□□□□ -0.15
USP39-220ENST00000613444 VCANP13611 3396 aa14.13□□□□□ -0.15
USP39-220ENST00000613444 TCP11X1B4DZS4 312 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 G3V2L1 256 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 NEMP1O14524 444 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 TSPAN6O43657 245 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 DPTQ07507 201 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 CSHL1Q14406 222 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 KHDC1Q4VXA5 237 aaKnown RBP14.12□□□□□ -0.15
USP39-220ENST00000613444 CES4AQ5XG92 561 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 PAQR3Q6TCH7 311 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 TBC1D1Q86TI0 1168 aaPredicted RBP14.12□□□□□ -0.15
USP39-220ENST00000613444 LKAAEAR1Q8TD35 194 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 CD200R1Q8TD46 325 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 ZNF75CPQ92670 426 aaPredicted RBP14.12□□□□□ -0.15
USP39-220ENST00000613444 CHMP6Q96FZ7 201 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 VPS35Q96QK1 796 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 COPS8Q99627 209 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 UNKQ9C0B0 810 aaKnown RBP14.12□□□□□ -0.15
USP39-220ENST00000613444 CLPBQ9H078 707 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 COPG2Q9UBF2 871 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 CNOT6Q9ULM6 557 aaKnown RBP14.12□□□□□ -0.15
USP39-220ENST00000613444 CA14Q9ULX7 337 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 KRBA1A5PL33 1030 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 C19orf67A6NJJ6 358 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 K7ESM1 405 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 TK2O00142 265 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 BIRC5O15392 142 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 RNASEH2AO75792 299 aaKnown RBP14.12□□□□□ -0.15
USP39-220ENST00000613444 LTA4HP09960 611 aaKnown RBP14.12□□□□□ -0.15
USP39-220ENST00000613444 NSG1P42857 185 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 GLRBP48167 497 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 FZD5Q13467 585 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 TSNAXIP1Q2TAA8 658 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 ZNF284Q2VY69 593 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 EOGTQ5NDL2 527 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 LRRC8EQ6NSJ5 796 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 ZNF852Q6ZMS4 543 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 Q6ZS52 159 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 NLRP8Q86W28 1048 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 LRRC34Q8IZ02 419 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 DDHD1Q8NEL9 900 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 BTN2A2Q8WVV5 523 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 NUS1Q96E22 293 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 MRGPRX1Q96LB2 322 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 RABEP2Q9H5N1 569 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 ARHGEF3Q9NR81 526 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 FBXL12Q9NXK8 326 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 SORCS3Q9UPU3 1222 aa14.12□□□□□ -0.15
USP39-220ENST00000613444 SGTAO43765 313 aa14.11□□□□□ -0.15
USP39-220ENST00000613444 VPS26AO75436 327 aa14.11□□□□□ -0.15
USP39-220ENST00000613444 TSPAN12O95859 305 aa14.11□□□□□ -0.15
USP39-220ENST00000613444 DRD4P21917 467 aa14.11□□□□□ -0.15
USP39-220ENST00000613444 ALDH3A1P30838 453 aa14.11□□□□□ -0.15
USP39-220ENST00000613444 PRKCQQ04759 706 aa14.11□□□□□ -0.15
USP39-220ENST00000613444 PDAP1Q13442 181 aaKnown RBP14.11□□□□□ -0.15
USP39-220ENST00000613444 SIDT2Q8NBJ9 832 aaKnown RBP14.11□□□□□ -0.15
USP39-220ENST00000613444 CXorf40AQ8TE69 158 aa14.11□□□□□ -0.15
USP39-220ENST00000613444 GNPTGQ9UJJ9 305 aa14.11□□□□□ -0.15
USP39-220ENST00000613444 H3BMM5 538 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 PLRG1O43660 514 aaKnown RBP14.1□□□□□ -0.15
USP39-220ENST00000613444 LZTS3O60299 673 aaPredicted RBP14.1□□□□□ -0.15
USP39-220ENST00000613444 DNTTP04053 509 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 CD1DP15813 335 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 BGNP21810 368 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 KCNA4P22459 653 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 TARSP26639 723 aaKnown RBP14.1□□□□□ -0.15
USP39-220ENST00000613444 ZBTB16Q05516 673 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 CRY1Q16526 586 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 FAM83EQ2M2I3 478 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 TECRLQ5HYJ1 363 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 AGAP9Q5VTM2 703 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 ISCA2Q86U28 154 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 OR6Y1Q8NGX8 325 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 GLYATL1Q969I3 302 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 CCT8L2Q96SF2 557 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 CPSF2Q9P2I0 782 aaKnown RBP14.1□□□□□ -0.15
USP39-220ENST00000613444 XPR1Q9UBH6 696 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 WNT16Q9UBV4 365 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 SCML1Q9UN30 329 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 ZFR2Q9UPR6 939 aaKnown RBP14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms