RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 CCDC3Q9BQI4 270 aa13.69□□□□□ -0.22
UPF1-205ENST00000598209 AP1M1Q9BXS5 423 aa13.69□□□□□ -0.22
UPF1-205ENST00000598209 SMOXQ9NWM0 555 aa13.69□□□□□ -0.22
UPF1-205ENST00000598209 SMARCAL1Q9NZC9 954 aa13.69□□□□□ -0.22
UPF1-205ENST00000598209 RABGEF1Q9UJ41 708 aa13.69□□□□□ -0.22
UPF1-205ENST00000598209 APPL1Q9UKG1 709 aa13.69□□□□□ -0.22
UPF1-205ENST00000598209 CLCA2Q9UQC9 943 aa13.69□□□□□ -0.22
UPF1-205ENST00000598209 KCNK6Q9Y257 313 aa13.69□□□□□ -0.22
UPF1-205ENST00000598209 TPRP12270 2363 aaKnown RBP13.69□□□□□ -0.22
UPF1-205ENST00000598209 CCL22O00626 93 aa13.68□□□□□ -0.22
UPF1-205ENST00000598209 CES2O00748 559 aa13.68□□□□□ -0.22
UPF1-205ENST00000598209 SRP72O76094 671 aaKnown RBP13.68□□□□□ -0.22
UPF1-205ENST00000598209 ECEL1O95672 775 aa13.68□□□□□ -0.22
UPF1-205ENST00000598209 GAS8O95995 478 aa13.68□□□□□ -0.22
UPF1-205ENST00000598209 APRTP07741 180 aa13.68□□□□□ -0.22
UPF1-205ENST00000598209 GLB1P16278 677 aa13.68□□□□□ -0.22
UPF1-205ENST00000598209 HADHAP40939 763 aa13.68□□□□□ -0.22
UPF1-205ENST00000598209 GRIA1P42261 906 aa13.68□□□□□ -0.22
UPF1-205ENST00000598209 GNG11P61952 73 aa13.68□□□□□ -0.22
UPF1-205ENST00000598209 XIAPP98170 497 aa13.68□□□□□ -0.22
UPF1-205ENST00000598209 TMEM115Q12893 351 aaPredicted RBP13.68□□□□□ -0.22
UPF1-205ENST00000598209 GTF2H3Q13889 308 aa13.68□□□□□ -0.22
UPF1-205ENST00000598209 PLA2G4EQ3MJ16 856 aa13.68□□□□□ -0.22
UPF1-205ENST00000598209 CERCAMQ5T4B2 595 aa13.68□□□□□ -0.22
UPF1-205ENST00000598209 GPRC6AQ5T6X5 926 aa13.68□□□□□ -0.22
UPF1-205ENST00000598209 CDCP2Q5VXM1 449 aa13.68□□□□□ -0.22
UPF1-205ENST00000598209 LRRTM4Q86VH4 590 aa13.68□□□□□ -0.22
UPF1-205ENST00000598209 C17orf82Q86X59 251 aaPredicted RBP13.68□□□□□ -0.22
UPF1-205ENST00000598209 NAGSQ8N159 534 aa13.68□□□□□ -0.22
UPF1-205ENST00000598209 CACTIN-AS1Q8N1I8 211 aa13.68□□□□□ -0.22
UPF1-205ENST00000598209 DCBLD1Q8N8Z6 715 aa13.68□□□□□ -0.22
UPF1-205ENST00000598209 DDHD1Q8NEL9 900 aa13.68□□□□□ -0.22
UPF1-205ENST00000598209 ACTRT1Q8TDG2 376 aa13.68□□□□□ -0.22
UPF1-205ENST00000598209 PATE1Q8WXA2 126 aa13.68□□□□□ -0.22
UPF1-205ENST00000598209 DNAJC1Q96KC8 554 aaKnown RBP13.68□□□□□ -0.22
UPF1-205ENST00000598209 TTC25Q96NG3 672 aa13.68□□□□□ -0.22
UPF1-205ENST00000598209 ASB8Q9H765 288 aa13.68□□□□□ -0.22
UPF1-205ENST00000598209 LRIT1Q9P2V4 623 aa13.68□□□□□ -0.22
UPF1-205ENST00000598209 RNF215Q9Y6U7 377 aa13.68□□□□□ -0.22
UPF1-205ENST00000598209 PIKFYVEQ9Y2I7 2098 aa13.68□□□□□ -0.22
UPF1-205ENST00000598209 KIF26BQ2KJY2 2108 aa13.67□□□□□ -0.22
UPF1-205ENST00000598209 KMOO15229 486 aa13.67□□□□□ -0.22
UPF1-205ENST00000598209 ZNF185O15231 689 aa13.67□□□□□ -0.22
UPF1-205ENST00000598209 CASC3O15234 703 aaKnown RBP13.67□□□□□ -0.22
UPF1-205ENST00000598209 NUDT21O43809 227 aaKnown RBP13.67□□□□□ -0.22
UPF1-205ENST00000598209 BASP1P80723 227 aaKnown RBP13.67□□□□□ -0.22
UPF1-205ENST00000598209 NFATC2Q13469 925 aa13.67□□□□□ -0.22
UPF1-205ENST00000598209 CAMK2BQ13554 666 aa13.67□□□□□ -0.22
UPF1-205ENST00000598209 CYP1B1Q16678 543 aa13.67□□□□□ -0.22
UPF1-205ENST00000598209 KCTD19Q17RG1 926 aaPredicted RBP13.67□□□□□ -0.22
UPF1-205ENST00000598209 INSCQ1MX18 579 aa13.67□□□□□ -0.22
UPF1-205ENST00000598209 TTC27Q6P3X3 843 aa13.67□□□□□ -0.22
UPF1-205ENST00000598209 TRAPPC5Q8IUR0 188 aa13.67□□□□□ -0.22
UPF1-205ENST00000598209 ZNF547Q8IVP9 402 aa13.67□□□□□ -0.22
UPF1-205ENST00000598209 ARL14Q8N4G2 192 aa13.67□□□□□ -0.22
UPF1-205ENST00000598209 WDR48Q8TAF3 677 aa13.67□□□□□ -0.22
UPF1-205ENST00000598209 STYXQ8WUJ0 223 aa13.67□□□□□ -0.22
UPF1-205ENST00000598209 DEPDC7Q96QD5 511 aa13.67□□□□□ -0.22
UPF1-205ENST00000598209 ZCCHC2Q9C0B9 1178 aaKnown RBP13.67□□□□□ -0.22
UPF1-205ENST00000598209 SYNDIG1Q9H7V2 258 aa13.67□□□□□ -0.22
UPF1-205ENST00000598209 CASS4Q9NQ75 786 aa13.67□□□□□ -0.22
UPF1-205ENST00000598209 EIF2B3Q9NR50 452 aaKnown RBP13.67□□□□□ -0.22
UPF1-205ENST00000598209 NLE1Q9NVX2 485 aaPredicted RBP13.67□□□□□ -0.22
UPF1-205ENST00000598209 TBC1D29Q9UFV1 150 aa13.67□□□□□ -0.22
UPF1-205ENST00000598209 CRLS1Q9UJA2 301 aa13.67□□□□□ -0.22
UPF1-205ENST00000598209 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.67□□□□□ -0.22
UPF1-205ENST00000598209 ACACBO00763 2458 aa13.66□□□□□ -0.22
UPF1-205ENST00000598209 AKAP13Q12802 2813 aa13.66□□□□□ -0.22
UPF1-205ENST00000598209 CCDC78A2IDD5 438 aa13.66□□□□□ -0.22
UPF1-205ENST00000598209 TRABD2BA6NFA1 517 aa13.66□□□□□ -0.22
UPF1-205ENST00000598209 RHPN2P1A8MT19 583 aa13.66□□□□□ -0.22
UPF1-205ENST00000598209 SNX2O60749 519 aa13.66□□□□□ -0.22
UPF1-205ENST00000598209 CSO75390 466 aaKnown RBP13.66□□□□□ -0.22
UPF1-205ENST00000598209 EML2O95834 649 aa13.66□□□□□ -0.22
UPF1-205ENST00000598209 PNLIPP16233 465 aa13.66□□□□□ -0.22
UPF1-205ENST00000598209 ZNF7P17097 686 aaPredicted RBP13.66□□□□□ -0.22
UPF1-205ENST00000598209 TCP1P17987 556 aaKnown RBP13.66□□□□□ -0.22
UPF1-205ENST00000598209 MSH3P20585 1137 aa13.66□□□□□ -0.22
UPF1-205ENST00000598209 ITGALP20701 1170 aa13.66□□□□□ -0.22
UPF1-205ENST00000598209 AKT1P31749 480 aa13.66□□□□□ -0.22
UPF1-205ENST00000598209 MC4RP32245 332 aa13.66□□□□□ -0.22
UPF1-205ENST00000598209 COILP38432 576 aaPredicted RBP13.66□□□□□ -0.22
UPF1-205ENST00000598209 VPS41P49754 854 aa13.66□□□□□ -0.22
UPF1-205ENST00000598209 CLCNKAP51800 687 aa13.66□□□□□ -0.22
UPF1-205ENST00000598209 CCL7P80098 99 aa13.66□□□□□ -0.22
UPF1-205ENST00000598209 BIRC2Q13490 618 aa13.66□□□□□ -0.22
UPF1-205ENST00000598209 TRIP13Q15645 432 aaPredicted RBP13.66□□□□□ -0.22
UPF1-205ENST00000598209 CCDC38Q502W7 563 aa13.66□□□□□ -0.22
UPF1-205ENST00000598209 RBM44Q6ZP01 1051 aaKnown RBP13.66□□□□□ -0.22
UPF1-205ENST00000598209 SNX20Q7Z614 316 aa13.66□□□□□ -0.22
UPF1-205ENST00000598209 CCNJLQ8IV13 435 aa13.66□□□□□ -0.22
UPF1-205ENST00000598209 RASGEF1AQ8N9B8 481 aa13.66□□□□□ -0.22
UPF1-205ENST00000598209 Q8N9G6 341 aaPredicted RBP13.66□□□□□ -0.22
UPF1-205ENST00000598209 ULK4Q96C45 1275 aa13.66□□□□□ -0.22
UPF1-205ENST00000598209 TIMM29Q9BSF4 260 aa13.66□□□□□ -0.22
UPF1-205ENST00000598209 LRRN3Q9H3W5 708 aa13.66□□□□□ -0.22
UPF1-205ENST00000598209 OSGEPL1Q9H4B0 414 aa13.66□□□□□ -0.22
UPF1-205ENST00000598209 FAM96AQ9H5X1 160 aa13.66□□□□□ -0.22
UPF1-205ENST00000598209 KLC4Q9NSK0 619 aa13.66□□□□□ -0.22
UPF1-205ENST00000598209 SLC23A2Q9UGH3 650 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms