RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 CCDC66A2RUB6 948 aa12.89□□□□□ -0.35
LIG1-212ENST00000596549 C9orf172C9J069 976 aa12.89□□□□□ -0.35
LIG1-212ENST00000596549 TMX2-CTNND1H3BSU7 103 aa12.89□□□□□ -0.35
LIG1-212ENST00000596549 GAPDHSO14556 408 aaPredicted RBP12.89□□□□□ -0.35
LIG1-212ENST00000596549 PRAMEF10O60809 474 aa12.89□□□□□ -0.35
LIG1-212ENST00000596549 F3P13726 295 aa12.89□□□□□ -0.35
LIG1-212ENST00000596549 HMGCLP35914 325 aa12.89□□□□□ -0.35
LIG1-212ENST00000596549 ARSDP51689 593 aa12.89□□□□□ -0.35
LIG1-212ENST00000596549 LIMK2P53671 638 aa12.89□□□□□ -0.35
LIG1-212ENST00000596549 COPS2P61201 443 aa12.89□□□□□ -0.35
LIG1-212ENST00000596549 HHEXQ03014 270 aa12.89□□□□□ -0.35
LIG1-212ENST00000596549 MPP3Q13368 585 aa12.89□□□□□ -0.35
LIG1-212ENST00000596549 OLIG2Q13516 323 aa12.89□□□□□ -0.35
LIG1-212ENST00000596549 SLC1A5Q15758 541 aa12.89□□□□□ -0.35
LIG1-212ENST00000596549 CLPPQ16740 277 aaPredicted RBP12.89□□□□□ -0.35
LIG1-212ENST00000596549 ATP13A5Q4VNC0 1218 aa12.89□□□□□ -0.35
LIG1-212ENST00000596549 PIM3Q86V86 326 aa12.89□□□□□ -0.35
LIG1-212ENST00000596549 JAMLQ86YT9 394 aa12.89□□□□□ -0.35
LIG1-212ENST00000596549 TMEM159Q96B96 161 aa12.89□□□□□ -0.35
LIG1-212ENST00000596549 CMKLR1Q99788 373 aa12.89□□□□□ -0.35
LIG1-212ENST00000596549 DESI2Q9BSY9 194 aa12.89□□□□□ -0.35
LIG1-212ENST00000596549 OSBPL8Q9BZF1 889 aa12.89□□□□□ -0.35
LIG1-212ENST00000596549 TRIM39Q9HCM9 518 aa12.89□□□□□ -0.35
LIG1-212ENST00000596549 SARS2Q9NP81 518 aaKnown RBP12.89□□□□□ -0.35
LIG1-212ENST00000596549 KCNK4Q9NYG8 393 aa12.89□□□□□ -0.35
LIG1-212ENST00000596549 SCHIP1Q9P0W5 487 aaPredicted RBP12.89□□□□□ -0.35
LIG1-212ENST00000596549 SLC23A2Q9UGH3 650 aa12.89□□□□□ -0.35
LIG1-212ENST00000596549 MGAQ8IWI9 3026 aa12.89□□□□□ -0.35
LIG1-212ENST00000596549 ATMQ13315 3056 aa12.89□□□□□ -0.35
LIG1-212ENST00000596549 TEX51A0A1B0GUA7 166 aa12.88□□□□□ -0.35
LIG1-212ENST00000596549 H7C0C1 242 aa12.88□□□□□ -0.35
LIG1-212ENST00000596549 ATXN7O15265 892 aaPredicted RBP12.88□□□□□ -0.35
LIG1-212ENST00000596549 BUD23O43709 281 aaKnown RBP12.88□□□□□ -0.35
LIG1-212ENST00000596549 SNX2O60749 519 aa12.88□□□□□ -0.35
LIG1-212ENST00000596549 C1QL1O75973 258 aa12.88□□□□□ -0.35
LIG1-212ENST00000596549 IPO7O95373 1038 aaKnown RBP12.88□□□□□ -0.35
LIG1-212ENST00000596549 EPOP01588 193 aa12.88□□□□□ -0.35
LIG1-212ENST00000596549 PRB1P04280 392 aa12.88□□□□□ -0.35
LIG1-212ENST00000596549 PYGMP11217 842 aa12.88□□□□□ -0.35
LIG1-212ENST00000596549 CCL4P13236 92 aa12.88□□□□□ -0.35
LIG1-212ENST00000596549 HLA-DPA1P20036 260 aa12.88□□□□□ -0.35
LIG1-212ENST00000596549 MPSTP25325 297 aa12.88□□□□□ -0.35
LIG1-212ENST00000596549 PSMB4P28070 264 aa12.88□□□□□ -0.35
LIG1-212ENST00000596549 ATP5OP48047 213 aa12.88□□□□□ -0.35
LIG1-212ENST00000596549 CLCNKAP51800 687 aa12.88□□□□□ -0.35
LIG1-212ENST00000596549 MAPK10P53779 464 aa12.88□□□□□ -0.35
LIG1-212ENST00000596549 UCNP55089 124 aa12.88□□□□□ -0.35
LIG1-212ENST00000596549 GPLD1P80108 840 aa12.88□□□□□ -0.35
LIG1-212ENST00000596549 BIRC2Q13490 618 aa12.88□□□□□ -0.35
LIG1-212ENST00000596549 SQSTM1Q13501 440 aa12.88□□□□□ -0.35
LIG1-212ENST00000596549 TGIF1Q15583 401 aa12.88□□□□□ -0.35
LIG1-212ENST00000596549 ARHGAP40Q5TG30 622 aa12.88□□□□□ -0.35
LIG1-212ENST00000596549 BROXQ5VW32 411 aa12.88□□□□□ -0.35
LIG1-212ENST00000596549 IYDQ6PHW0 289 aa12.88□□□□□ -0.35
LIG1-212ENST00000596549 GLT6D1Q7Z4J2 308 aa12.88□□□□□ -0.35
LIG1-212ENST00000596549 C11orf96Q7Z7L8 435 aa12.88□□□□□ -0.35
LIG1-212ENST00000596549 OR4D9Q8NGE8 314 aa12.88□□□□□ -0.35
LIG1-212ENST00000596549 BLOC1S5Q8TDH9 187 aa12.88□□□□□ -0.35
LIG1-212ENST00000596549 SNRNP27Q8WVK2 155 aaKnown RBP12.88□□□□□ -0.35
LIG1-212ENST00000596549 CCDC97Q96F63 343 aaPredicted RBP12.88□□□□□ -0.35
LIG1-212ENST00000596549 CALR3Q96L12 384 aaKnown RBP12.88□□□□□ -0.35
LIG1-212ENST00000596549 BAG1Q99933 345 aaPredicted RBP12.88□□□□□ -0.35
LIG1-212ENST00000596549 FICDQ9BVA6 458 aa12.88□□□□□ -0.35
LIG1-212ENST00000596549 PRDM8Q9NQV8 689 aa12.88□□□□□ -0.35
LIG1-212ENST00000596549 RAD18Q9NS91 495 aa12.88□□□□□ -0.35
LIG1-212ENST00000596549 IL17CQ9P0M4 197 aa12.88□□□□□ -0.35
LIG1-212ENST00000596549 PACSIN2Q9UNF0 486 aaPredicted RBP12.88□□□□□ -0.35
LIG1-212ENST00000596549 EFR3BQ9Y2G0 817 aa12.88□□□□□ -0.35
LIG1-212ENST00000596549 CAPN6Q9Y6Q1 641 aa12.88□□□□□ -0.35
LIG1-212ENST00000596549 GPR89AB7ZAQ6 455 aa12.87□□□□□ -0.35
LIG1-212ENST00000596549 K7ENP7 123 aa12.87□□□□□ -0.35
LIG1-212ENST00000596549 HGSO14964 777 aaPredicted RBP12.87□□□□□ -0.35
LIG1-212ENST00000596549 NVLO15381 856 aaKnown RBP12.87□□□□□ -0.35
LIG1-212ENST00000596549 DDX3YO15523 660 aaKnown RBP12.87□□□□□ -0.35
LIG1-212ENST00000596549 DUX1O43812 170 aa12.87□□□□□ -0.35
LIG1-212ENST00000596549 VEGFDO43915 354 aa12.87□□□□□ -0.35
LIG1-212ENST00000596549 GPR89BP0CG08 455 aa12.87□□□□□ -0.35
LIG1-212ENST00000596549 RBP3P10745 1247 aa12.87□□□□□ -0.35
LIG1-212ENST00000596549 LIPCP11150 499 aa12.87□□□□□ -0.35
LIG1-212ENST00000596549 CDC25BP30305 580 aa12.87□□□□□ -0.35
LIG1-212ENST00000596549 ADRA1AP35348 466 aa12.87□□□□□ -0.35
LIG1-212ENST00000596549 SPAM1P38567 509 aa12.87□□□□□ -0.35
LIG1-212ENST00000596549 NAP1L1P55209 391 aaKnown RBP12.87□□□□□ -0.35
LIG1-212ENST00000596549 RWDD2BP57060 319 aa12.87□□□□□ -0.35
LIG1-212ENST00000596549 EIF3EP60228 445 aaKnown RBP12.87□□□□□ -0.35
LIG1-212ENST00000596549 UBE2IP63279 158 aaKnown RBP12.87□□□□□ -0.35
LIG1-212ENST00000596549 VAC14Q08AM6 782 aa12.87□□□□□ -0.35
LIG1-212ENST00000596549 NFATC2Q13469 925 aa12.87□□□□□ -0.35
LIG1-212ENST00000596549 PTPRCAPQ14761 206 aa12.87□□□□□ -0.35
LIG1-212ENST00000596549 INSCQ1MX18 579 aa12.87□□□□□ -0.35
LIG1-212ENST00000596549 CCDC70Q6NSX1 233 aa12.87□□□□□ -0.35
LIG1-212ENST00000596549 INO80CQ6PI98 192 aaPredicted RBP12.87□□□□□ -0.35
LIG1-212ENST00000596549 FAM151BQ6UXP7 276 aa12.87□□□□□ -0.35
LIG1-212ENST00000596549 LRRTM4Q86VH4 590 aa12.87□□□□□ -0.35
LIG1-212ENST00000596549 CDKL3Q8IVW4 592 aaPredicted RBP12.87□□□□□ -0.35
LIG1-212ENST00000596549 USP7Q93009 1102 aa12.87□□□□□ -0.35
LIG1-212ENST00000596549 SRPK1Q96SB4 655 aaKnown RBP12.87□□□□□ -0.35
LIG1-212ENST00000596549 SLC38A3Q99624 504 aa12.87□□□□□ -0.35
LIG1-212ENST00000596549 TIMM29Q9BSF4 260 aa12.87□□□□□ -0.35
LIG1-212ENST00000596549 FSD1LQ9BXM9 530 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms