RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 HEBP2Q9Y5Z4 205 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 TTC34A8MYJ7 566 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 LSM1O15116 133 aaKnown RBP9.77□□□□□ -0.85
LIG3-216ENST00000593099 WDR47O94967 919 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 TLX1P31314 330 aaPredicted RBP9.77□□□□□ -0.85
LIG3-216ENST00000593099 PRIM2P49643 509 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 SUOXP51687 545 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 RPL6Q02878 288 aaKnown RBP9.77□□□□□ -0.85
LIG3-216ENST00000593099 SUZ12Q15022 739 aaKnown RBP9.77□□□□□ -0.85
LIG3-216ENST00000593099 XKR6Q5GH73 641 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 DCAF12L1Q5VU92 463 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 CMC1Q7Z7K0 106 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 SLC44A1Q8WWI5 657 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 CENPIQ92674 756 aaPredicted RBP9.77□□□□□ -0.85
LIG3-216ENST00000593099 DPY30Q9C005 99 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 RNF38Q9H0F5 515 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 TMEM165Q9HC07 324 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 SH3BP4Q9P0V3 963 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 AIM2O14862 343 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 ZNF217O75362 1048 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 PGLSO95336 258 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 RPS21P63220 83 aaKnown RBP9.76□□□□□ -0.85
LIG3-216ENST00000593099 MPP1Q00013 466 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 DPYSQ14117 519 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 OASLQ15646 514 aaKnown RBP9.76□□□□□ -0.85
LIG3-216ENST00000593099 CHRNA6Q15825 494 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 PIWIL4Q7Z3Z4 852 aaKnown RBP9.76□□□□□ -0.85
LIG3-216ENST00000593099 IFNEQ86WN2 208 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 AVL9Q8NBF6 648 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 CARD8Q9Y2G2 431 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 ACTL7BQ9Y614 415 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 LOC100653049A0A140TA62 436 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 SGTAO43765 313 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 VPS4BO75351 444 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 SH3BGRLO75368 114 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 KRT34O76011 436 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 COL6A2P12110 1019 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 ACP5P13686 325 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 HOXC8P31273 242 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 GKP32189 559 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 CLCN4P51793 760 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 AQP5P55064 265 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 MRPL28Q13084 256 aaKnown RBP9.76□□□□□ -0.85
LIG3-216ENST00000593099 ITIH4Q14624 930 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 CST6Q15828 149 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 CYP20A1Q6UW02 462 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 IL27RAQ6UWB1 636 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 GAREM2Q75VX8 874 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 LRRTM4Q86VH4 590 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 NPAS3Q8IXF0 933 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 LRRC34Q8IZ02 419 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 OR2T3Q8NH03 318 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 RDH11Q8TC12 318 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 GSDMCQ9BYG8 508 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 PSMD13Q9UNM6 376 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 ITM2BQ9Y287 266 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 NUMBLQ9Y6R0 609 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 TUBGCP6Q96RT7 1819 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 UBDO15205 165 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 TMEM63AO94886 807 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 OTCP00480 354 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 C5AR1P21730 350 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 CDH3P22223 829 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 PRKD1Q15139 912 aaPredicted RBP9.76□□□□□ -0.85
LIG3-216ENST00000593099 PKDCCQ504Y2 493 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 C1orf146Q5VVC0 180 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 HLA-DQA1Q5Y7H0 255 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 TANGO2Q6ICL3 276 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 DEFB119Q8N690 84 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 FAM46DQ8NEK8 389 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 TRPC4APQ8TEL6 797 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 NR1H4Q96RI1 486 aaPredicted RBP9.76□□□□□ -0.85
LIG3-216ENST00000593099 GPR174Q9BXC1 333 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 CAB39LQ9H9S4 337 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 IL1RAPL1Q9NZN1 696 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 KLHL3Q9UH77 587 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 RABGEF1Q9UJ41 708 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 SHBGP04278 402 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 NDUFS1P28331 727 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 KRT20P35900 424 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 LIMK2P53671 638 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 TUBA3CQ13748 450 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 PGS1Q32NB8 556 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 STX12Q86Y82 276 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 FNDC5Q8NAU1 212 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 FOXJ1Q92949 421 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 SLCO2A1Q92959 643 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 BBS4Q96RK4 519 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 RTP3Q9BQQ7 232 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 PHF7Q9BWX1 381 aaPredicted RBP9.76□□□□□ -0.85
LIG3-216ENST00000593099 OSBPL7Q9BZF2 842 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 RHBGQ9H310 441 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 FAM32AQ9Y421 112 aaKnown RBP9.76□□□□□ -0.85
LIG3-216ENST00000593099 EVPLQ92817 2033 aa9.76□□□□□ -0.85
LIG3-216ENST00000593099 PIPSLA2A3N6 862 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 STMND1H3BQB6 276 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 SIN3BO75182 1162 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 ASGR2P07307 311 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 LAMP2P13473 410 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 SEC24CP53992 1094 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 93 ms