RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 CHRM3P20309 590 aa19.52■□□□□ 0.71
CLIP3-206ENST00000593074 PKNOX1P55347 436 aa19.52■□□□□ 0.71
CLIP3-206ENST00000593074 LRP8Q14114 963 aa19.52■□□□□ 0.71
CLIP3-206ENST00000593074 GEN1Q17RS7 908 aa19.52■□□□□ 0.71
CLIP3-206ENST00000593074 PLEKHG6Q3KR16 790 aa19.52■□□□□ 0.71
CLIP3-206ENST00000593074 REP15Q6BDI9 236 aa19.52■□□□□ 0.71
CLIP3-206ENST00000593074 UGT3A1Q6NUS8 523 aa19.52■□□□□ 0.71
CLIP3-206ENST00000593074 PHYKPLQ8IUZ5 450 aa19.52■□□□□ 0.71
CLIP3-206ENST00000593074 HIPK4Q8NE63 616 aa19.52■□□□□ 0.71
CLIP3-206ENST00000593074 SLC25A23Q9BV35 468 aa19.52■□□□□ 0.71
CLIP3-206ENST00000593074 TUBB1Q9H4B7 451 aa19.52■□□□□ 0.71
CLIP3-206ENST00000593074 FBRSL1Q9HCM7 1045 aaKnown RBP19.52■□□□□ 0.71
CLIP3-206ENST00000593074 CCDC167Q9P0B6 97 aa19.52■□□□□ 0.71
CLIP3-206ENST00000593074 PCTPQ9UKL6 214 aa19.52■□□□□ 0.71
CLIP3-206ENST00000593074 PCDHGA7Q9Y5G6 932 aa19.52■□□□□ 0.71
CLIP3-206ENST00000593074 HELZP42694 1942 aaKnown RBP19.51■□□□□ 0.71
CLIP3-206ENST00000593074 PRAMEF1O95521 474 aa19.51■□□□□ 0.71
CLIP3-206ENST00000593074 SNRPB2P08579 225 aaKnown RBP19.51■□□□□ 0.71
CLIP3-206ENST00000593074 CD70P32970 193 aa19.51■□□□□ 0.71
CLIP3-206ENST00000593074 CCR2P41597 374 aa19.51■□□□□ 0.71
CLIP3-206ENST00000593074 CDKN3Q16667 212 aa19.51■□□□□ 0.71
CLIP3-206ENST00000593074 EML3Q32P44 896 aa19.51■□□□□ 0.71
CLIP3-206ENST00000593074 PSRC1Q6PGN9 363 aaPredicted RBP19.51■□□□□ 0.71
CLIP3-206ENST00000593074 IZUMO2Q6UXV1 221 aa19.51■□□□□ 0.71
CLIP3-206ENST00000593074 CPNE9Q8IYJ1 553 aa19.51■□□□□ 0.71
CLIP3-206ENST00000593074 MICAL1Q8TDZ2 1067 aa19.51■□□□□ 0.71
CLIP3-206ENST00000593074 POF1BQ8WVV4 589 aa19.51■□□□□ 0.71
CLIP3-206ENST00000593074 PDLIM5Q96HC4 596 aaKnown RBP19.51■□□□□ 0.71
CLIP3-206ENST00000593074 KCNA7Q96RP8 456 aa19.51■□□□□ 0.71
CLIP3-206ENST00000593074 ZFYVE1Q9HBF4 777 aa19.51■□□□□ 0.71
CLIP3-206ENST00000593074 ADAMTS6Q9UKP5 1117 aa19.51■□□□□ 0.71
CLIP3-206ENST00000593074 INTS6Q9UL03 887 aaKnown RBP19.51■□□□□ 0.71
CLIP3-206ENST00000593074 A0A1B0GTL3 188 aa19.5■□□□□ 0.71
CLIP3-206ENST00000593074 CFLARO15519 480 aa19.5■□□□□ 0.71
CLIP3-206ENST00000593074 FGF19O95750 216 aa19.5■□□□□ 0.71
CLIP3-206ENST00000593074 IGSF6O95976 241 aa19.5■□□□□ 0.71
CLIP3-206ENST00000593074 BMP1P13497 986 aa19.5■□□□□ 0.71
CLIP3-206ENST00000593074 PTPN2P17706 415 aa19.5■□□□□ 0.71
CLIP3-206ENST00000593074 GPX3P22352 226 aa19.5■□□□□ 0.71
CLIP3-206ENST00000593074 ME2P23368 584 aa19.5■□□□□ 0.71
CLIP3-206ENST00000593074 RPS3P23396 243 aaKnown RBP eCLIP19.5■□□□□ 0.71
CLIP3-206ENST00000593074 HK3P52790 923 aa19.5■□□□□ 0.71
CLIP3-206ENST00000593074 STX1BP61266 288 aa19.5■□□□□ 0.71
CLIP3-206ENST00000593074 CDC16Q13042 620 aa19.5■□□□□ 0.71
CLIP3-206ENST00000593074 FLOT2Q14254 428 aa19.5■□□□□ 0.71
CLIP3-206ENST00000593074 IRGCQ6NXR0 463 aa19.5■□□□□ 0.71
CLIP3-206ENST00000593074 SPPL3Q8TCT6 385 aa19.5■□□□□ 0.71
CLIP3-206ENST00000593074 LMLNQ96KR4 655 aa19.5■□□□□ 0.71
CLIP3-206ENST00000593074 ECSITQ9BQ95 431 aa19.5■□□□□ 0.71
CLIP3-206ENST00000593074 ATP13A3Q9H7F0 1226 aa19.5■□□□□ 0.71
CLIP3-206ENST00000593074 YY1AP1Q9H869 796 aa19.5■□□□□ 0.71
CLIP3-206ENST00000593074 SEMA4BQ9NPR2 832 aaPredicted RBP19.5■□□□□ 0.71
CLIP3-206ENST00000593074 BCAP29Q9UHQ4 241 aa19.5■□□□□ 0.71
CLIP3-206ENST00000593074 DHRS7Q9Y394 339 aa19.5■□□□□ 0.71
CLIP3-206ENST00000593074 PTGDR2Q9Y5Y4 395 aa19.5■□□□□ 0.71
CLIP3-206ENST00000593074 C1orf232A0A0U1RR37 186 aa19.5■□□□□ 0.71
CLIP3-206ENST00000593074 CAPN8A6NHC0 703 aa19.5■□□□□ 0.71
CLIP3-206ENST00000593074 AGTR2P50052 363 aa19.5■□□□□ 0.71
CLIP3-206ENST00000593074 FAM151BQ6UXP7 276 aa19.5■□□□□ 0.71
CLIP3-206ENST00000593074 RTL10Q7L3V2 364 aa19.5■□□□□ 0.71
CLIP3-206ENST00000593074 GPSM1Q86YR5 675 aa19.5■□□□□ 0.71
CLIP3-206ENST00000593074 PHOSPHO2Q8TCD6 241 aa19.5■□□□□ 0.71
CLIP3-206ENST00000593074 TLR9Q9NR96 1032 aa19.5■□□□□ 0.71
CLIP3-206ENST00000593074 GOLGA8CPA6NN73 597 aa19.49■□□□□ 0.71
CLIP3-206ENST00000593074 IQCF5A8MTL0 148 aa19.49■□□□□ 0.71
CLIP3-206ENST00000593074 CASQ2O14958 399 aaPredicted RBP19.49■□□□□ 0.71
CLIP3-206ENST00000593074 BCAS2O75934 225 aaPredicted RBP19.49■□□□□ 0.71
CLIP3-206ENST00000593074 MLYCDO95822 493 aa19.49■□□□□ 0.71
CLIP3-206ENST00000593074 DDX6P26196 483 aaKnown RBP eCLIP19.49■□□□□ 0.71
CLIP3-206ENST00000593074 PSME3P61289 254 aa19.49■□□□□ 0.71
CLIP3-206ENST00000593074 MMEL1Q495T6 779 aa19.49■□□□□ 0.71
CLIP3-206ENST00000593074 DGKKQ5KSL6 1271 aa19.49■□□□□ 0.71
CLIP3-206ENST00000593074 HACD2Q6Y1H2 254 aa19.49■□□□□ 0.71
CLIP3-206ENST00000593074 SERPINA9Q86WD7 417 aa19.49■□□□□ 0.71
CLIP3-206ENST00000593074 CMTM8Q8IZV2 173 aa19.49■□□□□ 0.71
CLIP3-206ENST00000593074 OR9I1Q8NGQ6 314 aa19.49■□□□□ 0.71
CLIP3-206ENST00000593074 NUSAP1Q9BXS6 441 aaKnown RBP19.49■□□□□ 0.71
CLIP3-206ENST00000593074 POLG2Q9UHN1 485 aa19.49■□□□□ 0.71
CLIP3-206ENST00000593074 TRBV5-4A0A0C4DH59 114 aa19.48■□□□□ 0.71
CLIP3-206ENST00000593074 NCF1BA6NI72 391 aaPredicted RBP19.48■□□□□ 0.71
CLIP3-206ENST00000593074 NCF1CA8MVU1 366 aaPredicted RBP19.48■□□□□ 0.71
CLIP3-206ENST00000593074 TRIM38O00635 465 aa19.48■□□□□ 0.71
CLIP3-206ENST00000593074 ACOT8O14734 319 aa19.48■□□□□ 0.71
CLIP3-206ENST00000593074 VPS4BO75351 444 aa19.48■□□□□ 0.71
CLIP3-206ENST00000593074 RFPL2O75678 378 aa19.48■□□□□ 0.71
CLIP3-206ENST00000593074 ESRRBO95718 433 aa19.48■□□□□ 0.71
CLIP3-206ENST00000593074 NCF1P14598 390 aaPredicted RBP19.48■□□□□ 0.71
CLIP3-206ENST00000593074 ZNF7P17097 686 aaPredicted RBP19.48■□□□□ 0.71
CLIP3-206ENST00000593074 GKP32189 559 aa19.48■□□□□ 0.71
CLIP3-206ENST00000593074 HNF1BP35680 557 aa19.48■□□□□ 0.71
CLIP3-206ENST00000593074 EPHA5P54756 1037 aa19.48■□□□□ 0.71
CLIP3-206ENST00000593074 MS4A2Q01362 244 aa19.48■□□□□ 0.71
CLIP3-206ENST00000593074 KLC1Q07866 573 aa19.48■□□□□ 0.71
CLIP3-206ENST00000593074 NFATC2Q13469 925 aa19.48■□□□□ 0.71
CLIP3-206ENST00000593074 ARHGAP15Q53QZ3 475 aa19.48■□□□□ 0.71
CLIP3-206ENST00000593074 FBXO48Q5FWF7 155 aa19.48■□□□□ 0.71
CLIP3-206ENST00000593074 C8orf82Q6P1X6 216 aaPredicted RBP19.48■□□□□ 0.71
CLIP3-206ENST00000593074 SNX20Q7Z614 316 aa19.48■□□□□ 0.71
CLIP3-206ENST00000593074 FUNDC1Q8IVP5 155 aa19.48■□□□□ 0.71
CLIP3-206ENST00000593074 DDIASQ8IXT1 998 aa19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms