RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 TRPV4Q9HBA0 871 aa14.06□□□□□ -0.16
LIG3-205ENST00000585941 THG1LQ9NWX6 298 aaKnown RBP14.06□□□□□ -0.16
LIG3-205ENST00000585941 DKK3Q9UBP4 350 aa14.06□□□□□ -0.16
LIG3-205ENST00000585941 MSRAQ9UJ68 235 aa14.06□□□□□ -0.16
LIG3-205ENST00000585941 E9PBE3 544 aa14.05□□□□□ -0.16
LIG3-205ENST00000585941 KLHL41O60662 606 aa14.05□□□□□ -0.16
LIG3-205ENST00000585941 MAGEC1O60732 1142 aa14.05□□□□□ -0.16
LIG3-205ENST00000585941 FGF4P08620 206 aa14.05□□□□□ -0.16
LIG3-205ENST00000585941 CHRM1P11229 460 aaPredicted RBP14.05□□□□□ -0.16
LIG3-205ENST00000585941 VIPR1P32241 457 aa14.05□□□□□ -0.16
LIG3-205ENST00000585941 NSG1P42857 185 aa14.05□□□□□ -0.16
LIG3-205ENST00000585941 COPAP53621 1224 aa14.05□□□□□ -0.16
LIG3-205ENST00000585941 INHBCP55103 352 aa14.05□□□□□ -0.16
LIG3-205ENST00000585941 PTSQ03393 145 aa14.05□□□□□ -0.16
LIG3-205ENST00000585941 EIF4HQ15056 248 aaKnown RBP14.05□□□□□ -0.16
LIG3-205ENST00000585941 PDGFRLQ15198 375 aa14.05□□□□□ -0.16
LIG3-205ENST00000585941 TSNQ15631 228 aaKnown RBP14.05□□□□□ -0.16
LIG3-205ENST00000585941 PDCD2Q16342 344 aaPredicted RBP14.05□□□□□ -0.16
LIG3-205ENST00000585941 PFKFB4Q16877 469 aa14.05□□□□□ -0.16
LIG3-205ENST00000585941 LSM12Q3MHD2 195 aaKnown RBP14.05□□□□□ -0.16
LIG3-205ENST00000585941 FAM78AQ5JUQ0 283 aa14.05□□□□□ -0.16
LIG3-205ENST00000585941 ANKS6Q68DC2 871 aa14.05□□□□□ -0.16
LIG3-205ENST00000585941 GPSM1Q86YR5 675 aa14.05□□□□□ -0.16
LIG3-205ENST00000585941 CHST14Q8NCH0 376 aa14.05□□□□□ -0.16
LIG3-205ENST00000585941 VN1R2Q8NFZ6 395 aa14.05□□□□□ -0.16
LIG3-205ENST00000585941 ACTRT2Q8TDY3 377 aa14.05□□□□□ -0.16
LIG3-205ENST00000585941 EEF1AKMT1Q8WVE0 214 aa14.05□□□□□ -0.16
LIG3-205ENST00000585941 EXT2Q93063 718 aa14.05□□□□□ -0.16
LIG3-205ENST00000585941 LRRC3BQ96PB8 259 aa14.05□□□□□ -0.16
LIG3-205ENST00000585941 MIPEPQ99797 713 aa14.05□□□□□ -0.16
LIG3-205ENST00000585941 SHCBP1LQ9BZQ2 653 aa14.05□□□□□ -0.16
LIG3-205ENST00000585941 CIPCQ9C0C6 399 aa14.05□□□□□ -0.16
LIG3-205ENST00000585941 MEAF6Q9HAF1 191 aa14.05□□□□□ -0.16
LIG3-205ENST00000585941 ACSS2Q9NR19 701 aa14.05□□□□□ -0.16
LIG3-205ENST00000585941 LATS2Q9NRM7 1088 aa14.05□□□□□ -0.16
LIG3-205ENST00000585941 ZDHHC3Q9NYG2 299 aa14.05□□□□□ -0.16
LIG3-205ENST00000585941 IL36AQ9UHA7 158 aa14.05□□□□□ -0.16
LIG3-205ENST00000585941 MTF2Q9Y483 593 aaPredicted RBP14.05□□□□□ -0.16
LIG3-205ENST00000585941 TRAF6Q9Y4K3 522 aa14.05□□□□□ -0.16
LIG3-205ENST00000585941 WASF2Q9Y6W5 498 aa14.05□□□□□ -0.16
LIG3-205ENST00000585941 PRRC2BQ5JSZ5 2229 aaKnown RBP14.05□□□□□ -0.16
LIG3-205ENST00000585941 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.04□□□□□ -0.16
LIG3-205ENST00000585941 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.04□□□□□ -0.16
LIG3-205ENST00000585941 RGSL1A5PLK6 1076 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 NEMP1O14524 444 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 DCXO43602 365 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 SNX2O60749 519 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 TULP3O75386 442 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 ECI2O75521 394 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 THRAP10827 490 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 DGKAP23743 735 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 EPHA3P29320 983 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 MAGEA10P43363 369 aaPredicted RBP14.04□□□□□ -0.16
LIG3-205ENST00000585941 SPINT3P49223 89 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 DCDC1P59894 354 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 KLF10Q13118 480 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 TTLL9Q3SXZ7 439 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 ETFBKMTQ8IXQ9 262 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 CLYBLQ8N0X4 340 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 GPR26Q8NDV2 337 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 FAM13CQ8NE31 585 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 GIMAP7Q8NHV1 300 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 CYB5D2Q8WUJ1 264 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 FGF13Q92913 245 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 PANX3Q96QZ0 392 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 SLC30A3Q99726 388 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 WDR55Q9H6Y2 383 aaPredicted RBP14.04□□□□□ -0.16
LIG3-205ENST00000585941 SARS2Q9NP81 518 aaKnown RBP14.04□□□□□ -0.16
LIG3-205ENST00000585941 NUDT4Q9NZJ9 180 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 NFKBIL1Q9UBC1 381 aaPredicted RBP14.04□□□□□ -0.16
LIG3-205ENST00000585941 GALPQ9UBC7 116 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 B4GALT6Q9UBX8 382 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 BAIAP2L1Q9UHR4 511 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 PLA2G4CQ9UP65 541 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 PIKFYVEQ9Y2I7 2098 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 CHD7Q9P2D1 2997 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 NPEPPSL1A6NEC2 478 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 TTC34A8MYJ7 566 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 UPK3BL1B0FP48 263 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 UPK3BL2E5RIL1 263 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 CDC7O00311 574 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 SDHDO14521 159 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 MLYCDO95822 493 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 CBSLP0DN79 551 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 LHCGRP22888 699 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 CBSP35520 551 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 PGM1P36871 562 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 VIPR2P41587 438 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 MXRA7P84157 204 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 LCP2Q13094 533 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 NAA25Q14CX7 972 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 ZNF805Q5CZA5 627 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 PPP2R2DQ66LE6 453 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 NXNQ6DKJ4 435 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 EFL1Q7Z2Z2 1120 aaKnown RBP14.04□□□□□ -0.16
LIG3-205ENST00000585941 GPR149Q86SP6 731 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 HOMEZQ8IX15 550 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 RAVER1Q8IY67 606 aaKnown RBP14.04□□□□□ -0.16
LIG3-205ENST00000585941 CPNE9Q8IYJ1 553 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 RBM15BQ8NDT2 890 aaKnown RBP14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms