RNA–Protein interactions for RNA: ENST00000585847.5

VMP1-202, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-202ENST00000585847 LIG3P49916 1009 aa12.55□□□□□ -0.4
VMP1-202ENST00000585847 STC1P52823 247 aa12.55□□□□□ -0.4
VMP1-202ENST00000585847 SLC12A2P55011 1212 aa12.55□□□□□ -0.4
VMP1-202ENST00000585847 IL9RQ01113 521 aa12.55□□□□□ -0.4
VMP1-202ENST00000585847 CACNG1Q06432 222 aa12.55□□□□□ -0.4
VMP1-202ENST00000585847 ITGA9Q13797 1035 aa12.55□□□□□ -0.4
VMP1-202ENST00000585847 ARHGEF7Q14155 803 aa12.55□□□□□ -0.4
VMP1-202ENST00000585847 EFTUD2Q15029 972 aaKnown RBP eCLIP12.55□□□□□ -0.4
VMP1-202ENST00000585847 LPAL2Q16609 132 aa12.55□□□□□ -0.4
VMP1-202ENST00000585847 TSNAXIP1Q2TAA8 658 aa12.55□□□□□ -0.4
VMP1-202ENST00000585847 UBAP2Q5T6F2 1119 aaKnown RBP12.55□□□□□ -0.4
VMP1-202ENST00000585847 LRRC66Q68CR7 880 aa12.55□□□□□ -0.4
VMP1-202ENST00000585847 TBC1D3GQ6DHY5 549 aa12.55□□□□□ -0.4
VMP1-202ENST00000585847 TBC1D3CQ6IPX1 549 aa12.55□□□□□ -0.4
VMP1-202ENST00000585847 KIAA1161Q6NSJ0 714 aa12.55□□□□□ -0.4
VMP1-202ENST00000585847 PRR23BQ6ZRT6 265 aa12.55□□□□□ -0.4
VMP1-202ENST00000585847 MICALCLQ6ZW33 695 aa12.55□□□□□ -0.4
VMP1-202ENST00000585847 LYSMD3Q7Z3D4 306 aa12.55□□□□□ -0.4
VMP1-202ENST00000585847 HSD11B1LQ7Z5J1 315 aa12.55□□□□□ -0.4
VMP1-202ENST00000585847 TECPR1Q7Z6L1 1165 aa12.55□□□□□ -0.4
VMP1-202ENST00000585847 TRIM42Q8IWZ5 723 aa12.55□□□□□ -0.4
VMP1-202ENST00000585847 NRSN1Q8IZ57 195 aa12.55□□□□□ -0.4
VMP1-202ENST00000585847 TBC1D3Q8IZP1 549 aaPredicted RBP12.55□□□□□ -0.4
VMP1-202ENST00000585847 PELI3Q8N2H9 469 aa12.55□□□□□ -0.4
VMP1-202ENST00000585847 HEXDCQ8WVB3 486 aa12.55□□□□□ -0.4
VMP1-202ENST00000585847 DNASE2BQ8WZ79 361 aa12.55□□□□□ -0.4
VMP1-202ENST00000585847 CDKN2AIPNLQ96HQ2 116 aa12.55□□□□□ -0.4
VMP1-202ENST00000585847 DNAJC1Q96KC8 554 aaKnown RBP12.55□□□□□ -0.4
VMP1-202ENST00000585847 KLF6Q99612 283 aaPredicted RBP12.55□□□□□ -0.4
VMP1-202ENST00000585847 C1QTNF2Q9BXJ5 285 aa12.55□□□□□ -0.4
VMP1-202ENST00000585847 PCED1AQ9H1Q7 454 aa12.55□□□□□ -0.4
VMP1-202ENST00000585847 SMYD2Q9NRG4 433 aa12.55□□□□□ -0.4
VMP1-202ENST00000585847 IARS2Q9NSE4 1012 aaKnown RBP12.55□□□□□ -0.4
VMP1-202ENST00000585847 INTS9Q9NV88 658 aaKnown RBP12.55□□□□□ -0.4
VMP1-202ENST00000585847 DCDC2Q9UHG0 476 aa12.55□□□□□ -0.4
VMP1-202ENST00000585847 ADAM21Q9UKJ8 722 aa12.55□□□□□ -0.4
VMP1-202ENST00000585847 PCDHB1Q9Y5F3 818 aa12.55□□□□□ -0.4
VMP1-202ENST00000585847 SLC30A1Q9Y6M5 507 aa12.55□□□□□ -0.4
VMP1-202ENST00000585847 GPR179Q6PRD1 2367 aa12.55□□□□□ -0.4
VMP1-202ENST00000585847 CACNA1BQ00975 2339 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 C1orf232A0A0U1RR37 186 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 TMEM120BA0PK00 339 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 DCDC2BA2VCK2 349 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 QSOX1O00391 747 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 COPEO14579 308 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 TYROBPO43914 113 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 NDUFS2O75306 463 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 MAOBP27338 520 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 MAT2AP31153 395 aaKnown RBP12.54□□□□□ -0.4
VMP1-202ENST00000585847 CRHR1P34998 444 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 SPAM1P38567 509 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 MDH1P40925 334 aaKnown RBP12.54□□□□□ -0.4
VMP1-202ENST00000585847 PI4KAP42356 2102 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 SLC1A2P43004 574 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 SPEM2Q0P670 501 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 SIM2Q14190 667 aaPredicted RBP12.54□□□□□ -0.4
VMP1-202ENST00000585847 ITIH4Q14624 930 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 AGERQ15109 404 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 LAIR1Q6GTX8 287 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 FAM45BPQ6NSW5 357 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 ZNF765Q7L2R6 523 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 ARMCX6Q7L4S7 300 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 CYP2U1Q7Z449 544 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 SNX20Q7Z614 316 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 BANPQ8N9N5 519 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 TP53I13Q8NBR0 393 aaPredicted RBP12.54□□□□□ -0.4
VMP1-202ENST00000585847 OR4K2Q8NGD2 314 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 RAB3IL1Q8TBN0 382 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 FAM45AQ8TCE6 357 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 SREK1Q8WXA9 508 aaKnown RBP12.54□□□□□ -0.4
VMP1-202ENST00000585847 ASB12Q8WXK4 309 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 HDAC10Q969S8 669 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 HSPA12BQ96MM6 686 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 CAPS2Q9BXY5 557 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 CCDC68Q9H2F9 335 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 SMOXQ9NWM0 555 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 CTNNAL1Q9UBT7 734 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 TLK1Q9UKI8 766 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 GRID1Q9ULK0 1009 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 KCTD3Q9Y597 815 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 ARL5AQ9Y689 179 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 PLXNB3Q9ULL4 1909 aa12.54□□□□□ -0.4
VMP1-202ENST00000585847 TP53BP1Q12888 1972 aaPredicted RBP12.54□□□□□ -0.4
VMP1-202ENST00000585847 A0A087X1B8 175 aa12.53□□□□□ -0.4
VMP1-202ENST00000585847 A0A1W2PPC4 97 aa12.53□□□□□ -0.4
VMP1-202ENST00000585847 POLR3GO15318 223 aaPredicted RBP12.53□□□□□ -0.4
VMP1-202ENST00000585847 MAP3K13O43283 966 aa12.53□□□□□ -0.4
VMP1-202ENST00000585847 TM7SF2O76062 418 aa12.53□□□□□ -0.4
VMP1-202ENST00000585847 FSBPO95073 299 aa12.53□□□□□ -0.4
VMP1-202ENST00000585847 PAK4O96013 591 aaPredicted RBP12.53□□□□□ -0.4
VMP1-202ENST00000585847 ESR1P03372 595 aa12.53□□□□□ -0.4
VMP1-202ENST00000585847 STMN1P16949 149 aa12.53□□□□□ -0.4
VMP1-202ENST00000585847 ITPKAP23677 461 aa12.53□□□□□ -0.4
VMP1-202ENST00000585847 TYK2P29597 1187 aa12.53□□□□□ -0.4
VMP1-202ENST00000585847 RPS21P63220 83 aaKnown RBP12.53□□□□□ -0.4
VMP1-202ENST00000585847 PTPRCAPQ14761 206 aa12.53□□□□□ -0.4
VMP1-202ENST00000585847 ZKSCAN8Q15776 578 aaPredicted RBP12.53□□□□□ -0.4
VMP1-202ENST00000585847 WSCD2Q2TBF2 565 aa12.53□□□□□ -0.4
VMP1-202ENST00000585847 CCDC153Q494R4 210 aa12.53□□□□□ -0.4
VMP1-202ENST00000585847 PEAR1Q5VY43 1037 aaPredicted RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms