RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 SMC6Q96SB8 1091 aa24.86■■□□□ 1.57
SHMT1-207ENST00000580002 SLC17A9Q9BYT1 436 aa24.86■■□□□ 1.57
SHMT1-207ENST00000580002 BTBD1Q9H0C5 482 aa24.86■■□□□ 1.57
SHMT1-207ENST00000580002 RAD18Q9NS91 495 aa24.86■■□□□ 1.57
SHMT1-207ENST00000580002 OAS3Q9Y6K5 1087 aaKnown RBP24.86■■□□□ 1.57
SHMT1-207ENST00000580002 TYROBPO43914 113 aa24.85■■□□□ 1.57
SHMT1-207ENST00000580002 PKMP14618 531 aaKnown RBP24.85■■□□□ 1.57
SHMT1-207ENST00000580002 RPA3P35244 121 aaPredicted RBP24.85■■□□□ 1.57
SHMT1-207ENST00000580002 RPS9P46781 194 aaKnown RBP24.85■■□□□ 1.57
SHMT1-207ENST00000580002 SERPINB8P50452 374 aa24.85■■□□□ 1.57
SHMT1-207ENST00000580002 PPP2R2AP63151 447 aa24.85■■□□□ 1.57
SHMT1-207ENST00000580002 NAPRTQ6XQN6 538 aa24.85■■□□□ 1.57
SHMT1-207ENST00000580002 ZNF765Q7L2R6 523 aa24.85■■□□□ 1.57
SHMT1-207ENST00000580002 TP53I13Q8NBR0 393 aaPredicted RBP24.85■■□□□ 1.57
SHMT1-207ENST00000580002 GLYATL1Q969I3 302 aa24.85■■□□□ 1.57
SHMT1-207ENST00000580002 UHRF1Q96T88 793 aaPredicted RBP24.85■■□□□ 1.57
SHMT1-207ENST00000580002 COPS8Q99627 209 aa24.85■■□□□ 1.57
SHMT1-207ENST00000580002 EBF2Q9HAK2 575 aa24.85■■□□□ 1.57
SHMT1-207ENST00000580002 CA5BQ9Y2D0 317 aa24.85■■□□□ 1.57
SHMT1-207ENST00000580002 A0A096LPK6 155 aa24.85■■□□□ 1.57
SHMT1-207ENST00000580002 TMEM120BA0PK00 339 aa24.85■■□□□ 1.57
SHMT1-207ENST00000580002 PRMT5O14744 637 aaPredicted RBP24.85■■□□□ 1.57
SHMT1-207ENST00000580002 SLC35E2BP0CK96 405 aa24.85■■□□□ 1.57
SHMT1-207ENST00000580002 CCNFP41002 786 aa24.85■■□□□ 1.57
SHMT1-207ENST00000580002 DPTQ07507 201 aa24.85■■□□□ 1.57
SHMT1-207ENST00000580002 DMWDQ09019 674 aa24.85■■□□□ 1.57
SHMT1-207ENST00000580002 DLG1Q12959 904 aa24.85■■□□□ 1.57
SHMT1-207ENST00000580002 IRF4Q15306 451 aa24.85■■□□□ 1.57
SHMT1-207ENST00000580002 ZKSCAN8Q15776 578 aaPredicted RBP24.85■■□□□ 1.57
SHMT1-207ENST00000580002 ANKRD42Q8N9B4 389 aa24.85■■□□□ 1.57
SHMT1-207ENST00000580002 DTX3LQ8TDB6 740 aa24.85■■□□□ 1.57
SHMT1-207ENST00000580002 SGF29Q96ES7 293 aa24.85■■□□□ 1.57
SHMT1-207ENST00000580002 TOE1Q96GM8 510 aaKnown RBP24.85■■□□□ 1.57
SHMT1-207ENST00000580002 LGR4Q9BXB1 951 aa24.85■■□□□ 1.57
SHMT1-207ENST00000580002 CDH19Q9H159 772 aa24.85■■□□□ 1.57
SHMT1-207ENST00000580002 C6orf106Q9H6K1 298 aaPredicted RBP24.85■■□□□ 1.57
SHMT1-207ENST00000580002 PREBQ9HCU5 417 aa24.85■■□□□ 1.57
SHMT1-207ENST00000580002 SMOXQ9NWM0 555 aa24.85■■□□□ 1.57
SHMT1-207ENST00000580002 SLC17A7Q9P2U7 560 aa24.85■■□□□ 1.57
SHMT1-207ENST00000580002 ACTL7BQ9Y614 415 aa24.85■■□□□ 1.57
SHMT1-207ENST00000580002 IGLV3-16A0A075B6K0 115 aa24.84■■□□□ 1.57
SHMT1-207ENST00000580002 SLC25A14O95258 325 aaPredicted RBP24.84■■□□□ 1.57
SHMT1-207ENST00000580002 FDXRP22570 491 aa24.84■■□□□ 1.57
SHMT1-207ENST00000580002 POU4F1Q01851 419 aa24.84■■□□□ 1.57
SHMT1-207ENST00000580002 DNAJC3Q13217 504 aa24.84■■□□□ 1.57
SHMT1-207ENST00000580002 PNCKQ6P2M8 343 aa24.84■■□□□ 1.57
SHMT1-207ENST00000580002 C16orf46Q6P387 395 aa24.84■■□□□ 1.57
SHMT1-207ENST00000580002 RAPH1Q70E73 1250 aa24.84■■□□□ 1.57
SHMT1-207ENST00000580002 RBFAQ8N0V3 343 aa24.84■■□□□ 1.57
SHMT1-207ENST00000580002 MGARPQ8TDB4 240 aa24.84■■□□□ 1.57
SHMT1-207ENST00000580002 ANKRD49Q8WVL7 239 aa24.84■■□□□ 1.57
SHMT1-207ENST00000580002 SGTAO43765 313 aa24.83■■□□□ 1.57
SHMT1-207ENST00000580002 RHOBTB1O94844 696 aa24.83■■□□□ 1.57
SHMT1-207ENST00000580002 STMN1P16949 149 aa24.83■■□□□ 1.57
SHMT1-207ENST00000580002 ZNF7P17097 686 aaPredicted RBP24.83■■□□□ 1.57
SHMT1-207ENST00000580002 RAB10P61026 200 aa24.83■■□□□ 1.57
SHMT1-207ENST00000580002 SGCGQ13326 291 aa24.83■■□□□ 1.57
SHMT1-207ENST00000580002 LRRC14Q15048 493 aa24.83■■□□□ 1.57
SHMT1-207ENST00000580002 RNF187Q5TA31 235 aaPredicted RBP24.83■■□□□ 1.57
SHMT1-207ENST00000580002 KIAA1161Q6NSJ0 714 aa24.83■■□□□ 1.57
SHMT1-207ENST00000580002 GIMAP7Q8NHV1 300 aa24.83■■□□□ 1.57
SHMT1-207ENST00000580002 CENPTQ96BT3 561 aa24.83■■□□□ 1.57
SHMT1-207ENST00000580002 ULK4Q96C45 1275 aa24.83■■□□□ 1.57
SHMT1-207ENST00000580002 K7ESF4 209 aa24.82■■□□□ 1.56
SHMT1-207ENST00000580002 SEMA4FO95754 770 aa24.82■■□□□ 1.56
SHMT1-207ENST00000580002 IGLV3-19P01714 112 aa24.82■■□□□ 1.56
SHMT1-207ENST00000580002 INPP5AQ14642 412 aa24.82■■□□□ 1.56
SHMT1-207ENST00000580002 LYPLAL1Q5VWZ2 237 aa24.82■■□□□ 1.56
SHMT1-207ENST00000580002 FAM45BPQ6NSW5 357 aa24.82■■□□□ 1.56
SHMT1-207ENST00000580002 TSSK4Q6SA08 328 aa24.82■■□□□ 1.56
SHMT1-207ENST00000580002 RAVER1Q8IY67 606 aaKnown RBP24.82■■□□□ 1.56
SHMT1-207ENST00000580002 SIDT2Q8NBJ9 832 aaKnown RBP24.82■■□□□ 1.56
SHMT1-207ENST00000580002 DDHD1Q8NEL9 900 aa24.82■■□□□ 1.56
SHMT1-207ENST00000580002 OR2T34Q8NGX1 318 aa24.82■■□□□ 1.56
SHMT1-207ENST00000580002 FAM45AQ8TCE6 357 aa24.82■■□□□ 1.56
SHMT1-207ENST00000580002 TCP10LQ8TDR4 215 aa24.82■■□□□ 1.56
SHMT1-207ENST00000580002 KCTD4Q8WVF5 259 aa24.82■■□□□ 1.56
SHMT1-207ENST00000580002 SCG3Q8WXD2 468 aaKnown RBP24.82■■□□□ 1.56
SHMT1-207ENST00000580002 VPS35Q96QK1 796 aa24.82■■□□□ 1.56
SHMT1-207ENST00000580002 GPR21Q99679 349 aa24.82■■□□□ 1.56
SHMT1-207ENST00000580002 CLPBQ9H078 707 aa24.82■■□□□ 1.56
SHMT1-207ENST00000580002 SARS2Q9NP81 518 aaKnown RBP24.82■■□□□ 1.56
SHMT1-207ENST00000580002 WSB2Q9NYS7 404 aaPredicted RBP24.82■■□□□ 1.56
SHMT1-207ENST00000580002 OR1A2Q9Y585 309 aa24.82■■□□□ 1.56
SHMT1-207ENST00000580002 DCXO43602 365 aa24.82■■□□□ 1.56
SHMT1-207ENST00000580002 APBB3O95704 486 aa24.82■■□□□ 1.56
SHMT1-207ENST00000580002 AKT1P31749 480 aa24.82■■□□□ 1.56
SHMT1-207ENST00000580002 CXCL12P48061 93 aa24.82■■□□□ 1.56
SHMT1-207ENST00000580002 AGERQ15109 404 aa24.82■■□□□ 1.56
SHMT1-207ENST00000580002 TTC19Q6DKK2 380 aaPredicted RBP24.82■■□□□ 1.56
SHMT1-207ENST00000580002 DEFB119Q8N690 84 aa24.82■■□□□ 1.56
SHMT1-207ENST00000580002 BEND7Q8N7W2 519 aaPredicted RBP24.82■■□□□ 1.56
SHMT1-207ENST00000580002 RASGEF1AQ8N9B8 481 aa24.82■■□□□ 1.56
SHMT1-207ENST00000580002 FAM76AQ8TAV0 307 aa24.82■■□□□ 1.56
SHMT1-207ENST00000580002 C1QTNF1Q9BXJ1 281 aa24.82■■□□□ 1.56
SHMT1-207ENST00000580002 SENP1Q9P0U3 644 aa24.82■■□□□ 1.56
SHMT1-207ENST00000580002 TMEM98Q9Y2Y6 226 aa24.82■■□□□ 1.56
SHMT1-207ENST00000580002 PCYT1BQ9Y5K3 369 aaPredicted RBP24.82■■□□□ 1.56
SHMT1-207ENST00000580002 IGHV1OR15-9A0A0B4J2B8 117 aa24.81■■□□□ 1.56
SHMT1-207ENST00000580002 WISP3O95389 354 aaPredicted RBP24.81■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms