RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 GDF10P55107 478 aa23.6■■□□□ 1.37
SHMT1-206ENST00000579558 SPARCL1Q14515 664 aa23.6■■□□□ 1.37
SHMT1-206ENST00000579558 NR1D2Q14995 579 aa23.6■■□□□ 1.37
SHMT1-206ENST00000579558 TAF1AQ15573 450 aaPredicted RBP23.6■■□□□ 1.37
SHMT1-206ENST00000579558 PARP6Q2NL67 630 aa23.6■■□□□ 1.37
SHMT1-206ENST00000579558 AMZ1Q400G9 498 aa23.6■■□□□ 1.37
SHMT1-206ENST00000579558 MAP9Q49MG5 647 aa23.6■■□□□ 1.37
SHMT1-206ENST00000579558 KHDC1Q4VXA5 237 aaKnown RBP23.6■■□□□ 1.37
SHMT1-206ENST00000579558 FOXR1Q6PIV2 292 aa23.6■■□□□ 1.37
SHMT1-206ENST00000579558 LRRTM4Q86VH4 590 aa23.6■■□□□ 1.37
SHMT1-206ENST00000579558 SLC13A5Q86YT5 568 aaPredicted RBP23.6■■□□□ 1.37
SHMT1-206ENST00000579558 SNIP1Q8TAD8 396 aaKnown RBP23.6■■□□□ 1.37
SHMT1-206ENST00000579558 DTX3LQ8TDB6 740 aa23.6■■□□□ 1.37
SHMT1-206ENST00000579558 SLC37A2Q8TED4 501 aa23.6■■□□□ 1.37
SHMT1-206ENST00000579558 LIN37Q96GY3 246 aaPredicted RBP23.6■■□□□ 1.37
SHMT1-206ENST00000579558 ZNF578Q96N58 590 aaPredicted RBP23.6■■□□□ 1.37
SHMT1-206ENST00000579558 STRADBQ9C0K7 418 aa23.6■■□□□ 1.37
SHMT1-206ENST00000579558 RALYQ9UKM9 306 aaKnown RBP23.6■■□□□ 1.37
SHMT1-206ENST00000579558 KIF26BQ2KJY2 2108 aa23.6■■□□□ 1.37
SHMT1-206ENST00000579558 A0A087WV48 116 aa23.59■■□□□ 1.37
SHMT1-206ENST00000579558 KMOO15229 486 aa23.59■■□□□ 1.37
SHMT1-206ENST00000579558 CDK14O94921 469 aa23.59■■□□□ 1.37
SHMT1-206ENST00000579558 METTL18O95568 372 aa23.59■■□□□ 1.37
SHMT1-206ENST00000579558 GPR3P46089 330 aa23.59■■□□□ 1.37
SHMT1-206ENST00000579558 ITGA9Q13797 1035 aa23.59■■□□□ 1.37
SHMT1-206ENST00000579558 PTPRCAPQ14761 206 aa23.59■■□□□ 1.37
SHMT1-206ENST00000579558 INSCQ1MX18 579 aa23.59■■□□□ 1.37
SHMT1-206ENST00000579558 PLA2G4EQ3MJ16 856 aa23.59■■□□□ 1.37
SHMT1-206ENST00000579558 C19orf48Q6RUI8 117 aa23.59■■□□□ 1.37
SHMT1-206ENST00000579558 KLHDC8BQ8IXV7 354 aa23.59■■□□□ 1.37
SHMT1-206ENST00000579558 SFRP1Q8N474 314 aa23.59■■□□□ 1.37
SHMT1-206ENST00000579558 HNRNPLLQ8WVV9 542 aaKnown RBP23.59■■□□□ 1.37
SHMT1-206ENST00000579558 OSGEPL1Q9H4B0 414 aa23.59■■□□□ 1.37
SHMT1-206ENST00000579558 KLC4Q9NSK0 619 aa23.59■■□□□ 1.37
SHMT1-206ENST00000579558 PCDHGA8Q9Y5G5 932 aa23.59■■□□□ 1.37
SHMT1-206ENST00000579558 PMS2P1A4D2B8 440 aa23.58■■□□□ 1.37
SHMT1-206ENST00000579558 GPR39O43194 453 aa23.58■■□□□ 1.37
SHMT1-206ENST00000579558 UGT1A9O60656 530 aa23.58■■□□□ 1.37
SHMT1-206ENST00000579558 SLC2A4P14672 509 aa23.58■■□□□ 1.37
SHMT1-206ENST00000579558 UGT1A6P19224 532 aa23.58■■□□□ 1.37
SHMT1-206ENST00000579558 UGT1A1P22309 533 aa23.58■■□□□ 1.37
SHMT1-206ENST00000579558 UGT1A4P22310 534 aa23.58■■□□□ 1.37
SHMT1-206ENST00000579558 RBMS1P29558 406 aaKnown RBP23.58■■□□□ 1.37
SHMT1-206ENST00000579558 CCKBRP32239 447 aa23.58■■□□□ 1.37
SHMT1-206ENST00000579558 UGT1A3P35503 534 aa23.58■■□□□ 1.37
SHMT1-206ENST00000579558 UGT1A5P35504 534 aa23.58■■□□□ 1.37
SHMT1-206ENST00000579558 EIF2S3P41091 472 aaKnown RBP23.58■■□□□ 1.37
SHMT1-206ENST00000579558 FASLGP48023 281 aa23.58■■□□□ 1.37
SHMT1-206ENST00000579558 TMEM115Q12893 351 aaPredicted RBP23.58■■□□□ 1.37
SHMT1-206ENST00000579558 GTF2H3Q13889 308 aa23.58■■□□□ 1.37
SHMT1-206ENST00000579558 P3H1Q32P28 736 aa23.58■■□□□ 1.37
SHMT1-206ENST00000579558 OR4K2Q8NGD2 314 aa23.58■■□□□ 1.37
SHMT1-206ENST00000579558 BRSK1Q8TDC3 778 aa23.58■■□□□ 1.37
SHMT1-206ENST00000579558 TTC25Q96NG3 672 aa23.58■■□□□ 1.37
SHMT1-206ENST00000579558 FRMD8P1Q9BZ68 369 aaPredicted RBP23.58■■□□□ 1.37
SHMT1-206ENST00000579558 GRPEL1Q9HAV7 217 aa23.58■■□□□ 1.37
SHMT1-206ENST00000579558 UGT1A7Q9HAW7 530 aa23.58■■□□□ 1.37
SHMT1-206ENST00000579558 UGT1A10Q9HAW8 530 aa23.58■■□□□ 1.37
SHMT1-206ENST00000579558 UGT1A8Q9HAW9 530 aa23.58■■□□□ 1.37
SHMT1-206ENST00000579558 ASCL3Q9NQ33 180 aa23.58■■□□□ 1.37
SHMT1-206ENST00000579558 FEZ2Q9UHY8 353 aaPredicted RBP23.58■■□□□ 1.37
SHMT1-206ENST00000579558 ZFYVE26Q68DK2 2539 aa23.57■■□□□ 1.36
SHMT1-206ENST00000579558 FAM208BQ5VWN6 2430 aa23.57■■□□□ 1.36
SHMT1-206ENST00000579558 A6NCN8 305 aa23.57■■□□□ 1.36
SHMT1-206ENST00000579558 GAPDHSO14556 408 aaPredicted RBP23.57■■□□□ 1.36
SHMT1-206ENST00000579558 RRP8O43159 456 aaKnown RBP23.57■■□□□ 1.36
SHMT1-206ENST00000579558 LIASO43766 372 aa23.57■■□□□ 1.36
SHMT1-206ENST00000579558 CRTAMO95727 393 aa23.57■■□□□ 1.36
SHMT1-206ENST00000579558 CPNE6O95741 557 aa23.57■■□□□ 1.36
SHMT1-206ENST00000579558 F3P13726 295 aa23.57■■□□□ 1.36
SHMT1-206ENST00000579558 ZNF7P17097 686 aaPredicted RBP23.57■■□□□ 1.36
SHMT1-206ENST00000579558 CLCNKAP51800 687 aa23.57■■□□□ 1.36
SHMT1-206ENST00000579558 ERVPABLB-1P60509 514 aa23.57■■□□□ 1.36
SHMT1-206ENST00000579558 EIF3IQ13347 325 aaKnown RBP23.57■■□□□ 1.36
SHMT1-206ENST00000579558 LDLRAP1Q5SW96 308 aa23.57■■□□□ 1.36
SHMT1-206ENST00000579558 KCTD11Q693B1 232 aa23.57■■□□□ 1.36
SHMT1-206ENST00000579558 DENND5AQ6IQ26 1287 aa23.57■■□□□ 1.36
SHMT1-206ENST00000579558 IYDQ6PHW0 289 aa23.57■■□□□ 1.36
SHMT1-206ENST00000579558 IGF2-ASQ6U949 168 aa23.57■■□□□ 1.36
SHMT1-206ENST00000579558 LRRC69Q6ZNQ3 347 aa23.57■■□□□ 1.36
SHMT1-206ENST00000579558 TMPRSS9Q7Z410 1059 aa23.57■■□□□ 1.36
SHMT1-206ENST00000579558 PIM3Q86V86 326 aa23.57■■□□□ 1.36
SHMT1-206ENST00000579558 TRAPPC5Q8IUR0 188 aa23.57■■□□□ 1.36
SHMT1-206ENST00000579558 PRR11Q96HE9 360 aaPredicted RBP23.57■■□□□ 1.36
SHMT1-206ENST00000579558 TIMM29Q9BSF4 260 aa23.57■■□□□ 1.36
SHMT1-206ENST00000579558 ZCCHC2Q9C0B9 1178 aaKnown RBP23.57■■□□□ 1.36
SHMT1-206ENST00000579558 STN1Q9H668 368 aaKnown RBP23.57■■□□□ 1.36
SHMT1-206ENST00000579558 LRRC40Q9H9A6 602 aa23.57■■□□□ 1.36
SHMT1-206ENST00000579558 RDH14Q9HBH5 336 aa23.57■■□□□ 1.36
SHMT1-206ENST00000579558 ARNT2Q9HBZ2 717 aa23.57■■□□□ 1.36
SHMT1-206ENST00000579558 THSD1Q9NS62 852 aa23.57■■□□□ 1.36
SHMT1-206ENST00000579558 KCNK4Q9NYG8 393 aa23.57■■□□□ 1.36
SHMT1-206ENST00000579558 SLC23A2Q9UGH3 650 aa23.57■■□□□ 1.36
SHMT1-206ENST00000579558 KCTD3Q9Y597 815 aa23.57■■□□□ 1.36
SHMT1-206ENST00000579558 ZNF106Q9H2Y7 1883 aaKnown RBP23.57■■□□□ 1.36
SHMT1-206ENST00000579558 LAMA5O15230 3695 aa23.56■■□□□ 1.36
SHMT1-206ENST00000579558 PRAMEF1O95521 474 aa23.56■■□□□ 1.36
SHMT1-206ENST00000579558 PDE1BQ01064 536 aa23.56■■□□□ 1.36
SHMT1-206ENST00000579558 HHEXQ03014 270 aa23.56■■□□□ 1.36
SHMT1-206ENST00000579558 ZFP36L1Q07352 338 aaKnown RBP23.56■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms