RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 PDE1BQ01064 536 aa14.66□□□□□ -0.06
SS18-212ENST00000579061 ZFP36L1Q07352 338 aaKnown RBP14.66□□□□□ -0.06
SS18-212ENST00000579061 MSLNQ13421 630 aaPredicted RBP14.66□□□□□ -0.06
SS18-212ENST00000579061 SQSTM1Q13501 440 aa14.66□□□□□ -0.06
SS18-212ENST00000579061 RPS6KA1Q15418 735 aa14.66□□□□□ -0.06
SS18-212ENST00000579061 P3H1Q32P28 736 aa14.66□□□□□ -0.06
SS18-212ENST00000579061 C3orf38Q5JPI3 329 aa14.66□□□□□ -0.06
SS18-212ENST00000579061 LDLRAP1Q5SW96 308 aa14.66□□□□□ -0.06
SS18-212ENST00000579061 LRRTM4Q86VH4 590 aa14.66□□□□□ -0.06
SS18-212ENST00000579061 SFRP1Q8N474 314 aa14.66□□□□□ -0.06
SS18-212ENST00000579061 FAM71DQ8N9W8 422 aa14.66□□□□□ -0.06
SS18-212ENST00000579061 AVL9Q8NBF6 648 aa14.66□□□□□ -0.06
SS18-212ENST00000579061 SLC37A2Q8TED4 501 aa14.66□□□□□ -0.06
SS18-212ENST00000579061 PATE1Q8WXA2 126 aa14.66□□□□□ -0.06
SS18-212ENST00000579061 RTP4Q96DX8 246 aa14.66□□□□□ -0.06
SS18-212ENST00000579061 SLC46A1Q96NT5 459 aa14.66□□□□□ -0.06
SS18-212ENST00000579061 DPYSL5Q9BPU6 564 aa14.66□□□□□ -0.06
SS18-212ENST00000579061 TBL1YQ9BQ87 522 aa14.66□□□□□ -0.06
SS18-212ENST00000579061 ARFGAP3Q9NP61 516 aa14.66□□□□□ -0.06
SS18-212ENST00000579061 ASCL3Q9NQ33 180 aa14.66□□□□□ -0.06
SS18-212ENST00000579061 SMOXQ9NWM0 555 aa14.66□□□□□ -0.06
SS18-212ENST00000579061 KCNK6Q9Y257 313 aa14.66□□□□□ -0.06
SS18-212ENST00000579061 R3HDM2Q9Y2K5 976 aaKnown RBP14.66□□□□□ -0.06
SS18-212ENST00000579061 PRKAB1Q9Y478 270 aa14.66□□□□□ -0.06
SS18-212ENST00000579061 LAMA5O15230 3695 aa14.65□□□□□ -0.06
SS18-212ENST00000579061 KIR2DS5A0A0G2JLQ3 304 aa14.65□□□□□ -0.06
SS18-212ENST00000579061 A0A0G2JNG1 304 aa14.65□□□□□ -0.06
SS18-212ENST00000579061 A0A1W2PNU3 283 aaPredicted RBP14.65□□□□□ -0.06
SS18-212ENST00000579061 TCRBV7S2A1N4TA0A589 114 aa14.65□□□□□ -0.06
SS18-212ENST00000579061 A6NCN8 305 aa14.65□□□□□ -0.06
SS18-212ENST00000579061 KIR2DS3K7RE56 304 aa14.65□□□□□ -0.06
SS18-212ENST00000579061 PPM1DO15297 605 aa14.65□□□□□ -0.06
SS18-212ENST00000579061 RRP8O43159 456 aaKnown RBP14.65□□□□□ -0.06
SS18-212ENST00000579061 KCNJ13O60928 360 aa14.65□□□□□ -0.06
SS18-212ENST00000579061 CDK14O94921 469 aa14.65□□□□□ -0.06
SS18-212ENST00000579061 CRTAMO95727 393 aa14.65□□□□□ -0.06
SS18-212ENST00000579061 ACP5P13686 325 aa14.65□□□□□ -0.06
SS18-212ENST00000579061 F3P13726 295 aa14.65□□□□□ -0.06
SS18-212ENST00000579061 RBMS1P29558 406 aaKnown RBP14.65□□□□□ -0.06
SS18-212ENST00000579061 ALDH4A1P30038 563 aa14.65□□□□□ -0.06
SS18-212ENST00000579061 TMEM115Q12893 351 aaPredicted RBP14.65□□□□□ -0.06
SS18-212ENST00000579061 GTF2H3Q13889 308 aa14.65□□□□□ -0.06
SS18-212ENST00000579061 KIR2DS5Q14953 304 aa14.65□□□□□ -0.06
SS18-212ENST00000579061 CHRNA6Q15825 494 aa14.65□□□□□ -0.06
SS18-212ENST00000579061 ZNF648Q5T619 568 aaPredicted RBP14.65□□□□□ -0.06
SS18-212ENST00000579061 KCTD11Q693B1 232 aa14.65□□□□□ -0.06
SS18-212ENST00000579061 DENND5AQ6IQ26 1287 aa14.65□□□□□ -0.06
SS18-212ENST00000579061 IYDQ6PHW0 289 aa14.65□□□□□ -0.06
SS18-212ENST00000579061 LRRC69Q6ZNQ3 347 aa14.65□□□□□ -0.06
SS18-212ENST00000579061 B3GNT8Q7Z7M8 397 aa14.65□□□□□ -0.06
SS18-212ENST00000579061 PIM3Q86V86 326 aa14.65□□□□□ -0.06
SS18-212ENST00000579061 SLC13A5Q86YT5 568 aaPredicted RBP14.65□□□□□ -0.06
SS18-212ENST00000579061 SLITRK4Q8IW52 837 aa14.65□□□□□ -0.06
SS18-212ENST00000579061 DDHD1Q8NEL9 900 aa14.65□□□□□ -0.06
SS18-212ENST00000579061 TRIM58Q8NG06 486 aa14.65□□□□□ -0.06
SS18-212ENST00000579061 TMEM159Q96B96 161 aa14.65□□□□□ -0.06
SS18-212ENST00000579061 SH3KBP1Q96B97 665 aa14.65□□□□□ -0.06
SS18-212ENST00000579061 PRR11Q96HE9 360 aaPredicted RBP14.65□□□□□ -0.06
SS18-212ENST00000579061 TIMM29Q9BSF4 260 aa14.65□□□□□ -0.06
SS18-212ENST00000579061 ZCCHC2Q9C0B9 1178 aaKnown RBP14.65□□□□□ -0.06
SS18-212ENST00000579061 SARS2Q9NP81 518 aaKnown RBP14.65□□□□□ -0.06
SS18-212ENST00000579061 THSD1Q9NS62 852 aa14.65□□□□□ -0.06
SS18-212ENST00000579061 TBC1D29Q9UFV1 150 aa14.65□□□□□ -0.06
SS18-212ENST00000579061 ATXN7L1Q9ULK2 861 aaPredicted RBP14.65□□□□□ -0.06
SS18-212ENST00000579061 ARL5AQ9Y689 179 aa14.65□□□□□ -0.06
SS18-212ENST00000579061 CELSR3Q9NYQ7 3312 aa14.64□□□□□ -0.07
SS18-212ENST00000579061 BPTFQ12830 3046 aa14.64□□□□□ -0.07
SS18-212ENST00000579061 PRR19A6NJB7 356 aa14.64□□□□□ -0.07
SS18-212ENST00000579061 CDRT15L2A8MXV6 281 aa14.64□□□□□ -0.07
SS18-212ENST00000579061 GAPDHSO14556 408 aaPredicted RBP14.64□□□□□ -0.07
SS18-212ENST00000579061 PLD2O14939 933 aa14.64□□□□□ -0.07
SS18-212ENST00000579061 ZNF7P17097 686 aaPredicted RBP14.64□□□□□ -0.07
SS18-212ENST00000579061 PCBP4P57723 403 aaKnown RBP14.64□□□□□ -0.07
SS18-212ENST00000579061 OR1D5P58170 312 aa14.64□□□□□ -0.07
SS18-212ENST00000579061 GPLD1P80108 840 aa14.64□□□□□ -0.07
SS18-212ENST00000579061 OLIG2Q13516 323 aa14.64□□□□□ -0.07
SS18-212ENST00000579061 OASLQ15646 514 aaKnown RBP14.64□□□□□ -0.07
SS18-212ENST00000579061 INSCQ1MX18 579 aa14.64□□□□□ -0.07
SS18-212ENST00000579061 MAP9Q49MG5 647 aa14.64□□□□□ -0.07
SS18-212ENST00000579061 KHDC1Q4VXA5 237 aaKnown RBP14.64□□□□□ -0.07
SS18-212ENST00000579061 CHCHD2P9Q5T1J5 151 aaPredicted RBP14.64□□□□□ -0.07
SS18-212ENST00000579061 FAM151BQ6UXP7 276 aa14.64□□□□□ -0.07
SS18-212ENST00000579061 SLC9B2Q86UD5 537 aa14.64□□□□□ -0.07
SS18-212ENST00000579061 ZNF248Q8NDW4 579 aa14.64□□□□□ -0.07
SS18-212ENST00000579061 GDAP1Q8TB36 358 aa14.64□□□□□ -0.07
SS18-212ENST00000579061 TTC25Q96NG3 672 aa14.64□□□□□ -0.07
SS18-212ENST00000579061 APOL2Q9BQE5 337 aa14.64□□□□□ -0.07
SS18-212ENST00000579061 TMEM121Q9BTD3 319 aa14.64□□□□□ -0.07
SS18-212ENST00000579061 STN1Q9H668 368 aaKnown RBP14.64□□□□□ -0.07
SS18-212ENST00000579061 LRRC40Q9H9A6 602 aa14.64□□□□□ -0.07
SS18-212ENST00000579061 EPB41L5Q9HCM4 733 aa14.64□□□□□ -0.07
SS18-212ENST00000579061 LZTFL1Q9NQ48 299 aa14.64□□□□□ -0.07
SS18-212ENST00000579061 KLC4Q9NSK0 619 aa14.64□□□□□ -0.07
SS18-212ENST00000579061 DNMT3AQ9Y6K1 912 aaPredicted RBP14.64□□□□□ -0.07
SS18-212ENST00000579061 PTPRQQ9UMZ3 2332 aa14.63□□□□□ -0.07
SS18-212ENST00000579061 IGHV1OR21-1A0A087WYE8 117 aa14.63□□□□□ -0.07
SS18-212ENST00000579061 BUD23O43709 281 aaKnown RBP14.63□□□□□ -0.07
SS18-212ENST00000579061 LIASO43766 372 aa14.63□□□□□ -0.07
SS18-212ENST00000579061 UGT1A9O60656 530 aa14.63□□□□□ -0.07
SS18-212ENST00000579061 MTX2O75431 263 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms