RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 ZNF808Q8N4W9 903 aaPredicted RBP5.84□□□□□ -1.47
VPS53-219ENST00000576019 NSMCE1Q8WV22 266 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 XAGE5Q8WWM1 108 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 CTHRC1Q96CG8 243 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 HDAC11Q96DB2 347 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 ARHGEF26Q96DR7 871 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 FYTTD1Q96QD9 318 aaKnown RBP5.84□□□□□ -1.47
VPS53-219ENST00000576019 PRR25Q96S07 402 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 H2AFJQ9BTM1 129 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 NUP85Q9BW27 656 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 SLC5A7Q9GZV3 580 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 PDZD7Q9H5P4 517 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 IL1RAPL2Q9NP60 686 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 DCAF16Q9NXF7 216 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 FETUBQ9UGM5 382 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 ARMCX3Q9UH62 379 aaPredicted RBP5.84□□□□□ -1.47
VPS53-219ENST00000576019 PLAGL1Q9UM63 463 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 SMCHD1A6NHR9 2005 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 PMS2P1A4D2B8 440 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 SLC15A5A6NIM6 579 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 LRRC72A6NJI9 287 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 USP17L23D6RBM5 183 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 NDC80O14777 642 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 DSCR3O14972 297 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 SLC25A12O75746 678 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 BCAS2O75934 225 aaPredicted RBP5.83□□□□□ -1.48
VPS53-219ENST00000576019 KCNK5O95279 499 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 BCL10O95999 233 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 TMEM11P17152 192 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 MATN1P21941 496 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 TNFRSF8P28908 595 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 HOXA13P31271 388 aaPredicted RBP5.83□□□□□ -1.48
VPS53-219ENST00000576019 GKP32189 559 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 SLC8A1P32418 973 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 AGTR2P50052 363 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 RAB28P51157 221 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 SUOXP51687 545 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 RAC3P60763 192 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 ACSM2AQ08AH3 577 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 WSCD2Q2TBF2 565 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 ANKRD20A4Q4UJ75 823 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 ANKRD20A8PQ5CZ79 823 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 CXorf66Q5JRM2 361 aaPredicted RBP5.83□□□□□ -1.48
VPS53-219ENST00000576019 ANKRD20A2Q5SQ80 823 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 ANKRD20A1Q5TYW2 823 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 ANKRD20A3Q5VUR7 823 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 FKBP1CQ5VVH2 108 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 ACSM2BQ68CK6 577 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 LINC00696Q6ZRV3 163 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 TMEM200AQ86VY9 491 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 ANKRD35Q8N283 1001 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 SFRP1Q8N474 314 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 SCAIQ8N9R8 606 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 HJURPQ8NCD3 748 aaPredicted RBP5.83□□□□□ -1.48
VPS53-219ENST00000576019 SRFBP1Q8NEF9 429 aaKnown RBP5.83□□□□□ -1.48
VPS53-219ENST00000576019 ANKRD20A12PQ8NF67 263 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 MDGA1Q8NFP4 955 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 IPMKQ8NFU5 416 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 DENND1AQ8TEH3 1009 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 MBD6Q96DN6 1003 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 RBM18Q96H35 190 aaKnown RBP5.83□□□□□ -1.48
VPS53-219ENST00000576019 C16orf45Q96MC5 204 aaPredicted RBP5.83□□□□□ -1.48
VPS53-219ENST00000576019 PKP4Q99569 1192 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 SPXQ9BT56 116 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 SCNM1Q9BWG6 230 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 GOLPH3LQ9H4A5 285 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 ASAH2Q9NR71 780 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 ABHD10Q9NUJ1 306 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 MCM9Q9NXL9 1143 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 NTMQ9P121 344 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 HOOK1Q9UJC3 728 aaKnown RBP5.83□□□□□ -1.48
VPS53-219ENST00000576019 OAZ3Q9UMX2 235 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 B3GNT3Q9Y2A9 372 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 PKP3Q9Y446 797 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 LIPGQ9Y5X9 500 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 DOCK1Q14185 1865 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 TLN1Q9Y490 2541 aaKnown RBP5.83□□□□□ -1.48
VPS53-219ENST00000576019 ZNF236Q9UL36 1845 aa5.83□□□□□ -1.48
VPS53-219ENST00000576019 ABCA2Q9BZC7 2435 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 GPR75-ASB3A0A0A6YYF3 556 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 RGSL1A5PLK6 1076 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 PLRG1O43660 514 aaKnown RBP5.82□□□□□ -1.48
VPS53-219ENST00000576019 LRP3O75074 770 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 REC8O95072 547 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 TOP3BO95985 862 aaKnown RBP5.82□□□□□ -1.48
VPS53-219ENST00000576019 MBPP02686 304 aaPredicted RBP5.82□□□□□ -1.48
VPS53-219ENST00000576019 HEXAP06865 529 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 ELANEP08246 267 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 GP1BBP13224 206 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 PPP3CBP16298 524 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 TFEBP19484 476 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 GATA3P23771 443 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 SSTR4P31391 388 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 APOBEC3AP31941 199 aaPredicted RBP5.82□□□□□ -1.48
VPS53-219ENST00000576019 CDAP32320 146 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 JAK3P52333 1124 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 CCDC15Q0P6D6 951 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 TROAPQ12815 778 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 GRB14Q14449 540 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 ZNF273Q14593 569 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms