RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 IGLV3-16A0A075B6K0 115 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 ARHGAP33O14559 1287 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 ASMTLO95671 621 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 CA5AP35218 305 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 BNC1Q01954 994 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 GTF2H3Q13889 308 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 DBN1Q16643 649 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 TYSND1Q2T9J0 566 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 ZNF470Q6ECI4 717 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 DOK6Q6PKX4 331 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 PACS1Q6VY07 963 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 CCNI2Q6ZMN8 369 aaPredicted RBP16.9■□□□□ 0.3
NUP88-210ENST00000574867 GSPT2Q8IYD1 628 aaKnown RBP16.9■□□□□ 0.3
NUP88-210ENST00000574867 DCUN1D1Q96GG9 259 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 TCF12Q99081 682 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 FGF22Q9HCT0 170 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 MARCH4Q9P2E8 410 aaPredicted RBP16.9■□□□□ 0.3
NUP88-210ENST00000574867 VPS9D1Q9Y2B5 631 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 SNX11Q9Y5W9 270 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 DGKBQ9Y6T7 804 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 PRSS38A1L453 326 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 GOLGA8KD6RF30 607 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 GOLGA8TH3BQL2 631 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 DFNA5O60443 496 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 FOXD2O60548 495 aaPredicted RBP16.9■□□□□ 0.3
NUP88-210ENST00000574867 CEACAM5P06731 702 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 IVLP07476 585 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 PRSS56P0CW18 603 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 MYBL2P10244 700 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 PMLP29590 882 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 BLKP51451 505 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 PPARDQ03181 441 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 TMEM115Q12893 351 aaPredicted RBP16.9■□□□□ 0.3
NUP88-210ENST00000574867 CCDC6Q16204 474 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 CYS1Q717R9 158 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 ADGRG6Q86SQ4 1221 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 CILP2Q8IUL8 1156 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 CNTN4Q8IWV2 1026 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 RBFAQ8N0V3 343 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 SCARF2Q96GP6 870 aaPredicted RBP16.9■□□□□ 0.3
NUP88-210ENST00000574867 OR2AG1Q9H205 316 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 CDC42EP4Q9H3Q1 356 aaKnown RBP16.9■□□□□ 0.3
NUP88-210ENST00000574867 LRRC4CQ9HCJ2 640 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 PPANQ9NQ55 473 aaKnown RBP16.9■□□□□ 0.3
NUP88-210ENST00000574867 MOCS1Q9NZB8 636 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 IL1RAPL1Q9NZN1 696 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 ATXN10Q9UBB4 475 aa16.9■□□□□ 0.3
NUP88-210ENST00000574867 BPTFQ12830 3046 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 MTX2O75431 263 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 RASGRP1O95267 797 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 CER1O95813 267 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 NME1P15531 152 aaKnown RBP16.89■□□□□ 0.29
NUP88-210ENST00000574867 SSTR1P30872 391 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 STX2P32856 288 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 PHBP35232 272 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 NSG1P42857 185 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 SRP54P61011 504 aaKnown RBP16.89■□□□□ 0.29
NUP88-210ENST00000574867 EIF2B5Q13144 721 aaKnown RBP16.89■□□□□ 0.29
NUP88-210ENST00000574867 SEMA3AQ14563 771 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 CSRP2Q16527 193 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 ALG11Q2TAA5 492 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 KHDC1Q4VXA5 237 aaKnown RBP16.89■□□□□ 0.29
NUP88-210ENST00000574867 HSP90AA5PQ58FG0 334 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 CAPN12Q6ZSI9 719 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 C3orf62Q6ZUJ4 267 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 MICALCLQ6ZW33 695 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 OR1E3Q8WZA6 343 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 PDXPQ96GD0 296 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 ZNF514Q96K75 400 aaPredicted RBP16.89■□□□□ 0.29
NUP88-210ENST00000574867 SMOC1Q9H4F8 434 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 ARFGAP3Q9NP61 516 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 NINJ2Q9NZG7 142 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 TMEM98Q9Y2Y6 226 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 OTOGLQ3ZCN5 2332 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 H3BM21 787 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 YKT6O15498 198 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 NUAK1O60285 661 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 CDK14O94921 469 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 CSF2P04141 144 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 ERVK-10P10266 1014 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 ZNF7P17097 686 aaPredicted RBP16.89■□□□□ 0.29
NUP88-210ENST00000574867 ARRB1P49407 418 aaPredicted RBP16.89■□□□□ 0.29
NUP88-210ENST00000574867 GPX6P59796 221 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 IRX4P78413 519 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 MGAT5Q09328 741 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 SPEM2Q0P670 501 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 SMAD1Q15797 465 aaKnown RBP16.89■□□□□ 0.29
NUP88-210ENST00000574867 ZNF423Q2M1K9 1284 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 TRMT10BQ6PF06 316 aaKnown RBP16.89■□□□□ 0.29
NUP88-210ENST00000574867 KIAA0408Q6ZU52 694 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 TRMT10CQ7L0Y3 403 aaKnown RBP16.89■□□□□ 0.29
NUP88-210ENST00000574867 UNC5BQ8IZJ1 945 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 ELF4Q99607 663 aaPredicted RBP16.89■□□□□ 0.29
NUP88-210ENST00000574867 PARD6BQ9BYG5 372 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 VPS37BQ9H9H4 285 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 SEMA4GQ9NTN9 838 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 INTS10Q9NVR2 710 aaKnown RBP16.89■□□□□ 0.29
NUP88-210ENST00000574867 DNAJC28Q9NX36 388 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 ZFATQ9P243 1243 aa16.89■□□□□ 0.29
NUP88-210ENST00000574867 TMEM131Q92545 1883 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms