RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 CFAP99D6REC4 459 aa13.55□□□□□ -0.24
CCDC40-209ENST00000573474 STK25O00506 426 aa13.55□□□□□ -0.24
CCDC40-209ENST00000573474 RNGTTO60942 597 aaKnown RBP13.55□□□□□ -0.24
CCDC40-209ENST00000573474 VPS26AO75436 327 aa13.55□□□□□ -0.24
CCDC40-209ENST00000573474 RALBP11234 206 aa13.55□□□□□ -0.24
CCDC40-209ENST00000573474 SKIV2L2P42285 1042 aaKnown RBP13.55□□□□□ -0.24
CCDC40-209ENST00000573474 GPR1P46091 355 aa13.55□□□□□ -0.24
CCDC40-209ENST00000573474 ADPRHP54922 357 aa13.55□□□□□ -0.24
CCDC40-209ENST00000573474 WDR4P57081 412 aaKnown RBP13.55□□□□□ -0.24
CCDC40-209ENST00000573474 IRF9Q00978 393 aa13.55□□□□□ -0.24
CCDC40-209ENST00000573474 IL9RQ01113 521 aa13.55□□□□□ -0.24
CCDC40-209ENST00000573474 GUCY1A3Q02108 690 aa13.55□□□□□ -0.24
CCDC40-209ENST00000573474 SGCGQ13326 291 aa13.55□□□□□ -0.24
CCDC40-209ENST00000573474 PDAP1Q13442 181 aaKnown RBP13.55□□□□□ -0.24
CCDC40-209ENST00000573474 ZNF460Q14592 562 aa13.55□□□□□ -0.24
CCDC40-209ENST00000573474 UGT3A1Q6NUS8 523 aa13.55□□□□□ -0.24
CCDC40-209ENST00000573474 LVRNQ6Q4G3 990 aa13.55□□□□□ -0.24
CCDC40-209ENST00000573474 KYAT3Q6YP21 454 aaKnown RBP13.55□□□□□ -0.24
CCDC40-209ENST00000573474 TBC1D1Q86TI0 1168 aaPredicted RBP13.55□□□□□ -0.24
CCDC40-209ENST00000573474 DDHD1Q8NEL9 900 aa13.55□□□□□ -0.24
CCDC40-209ENST00000573474 FLCNQ8NFG4 579 aa13.55□□□□□ -0.24
CCDC40-209ENST00000573474 GDAP1Q8TB36 358 aa13.55□□□□□ -0.24
CCDC40-209ENST00000573474 KCNJ9Q92806 393 aa13.55□□□□□ -0.24
CCDC40-209ENST00000573474 GLYATL1Q969I3 302 aa13.55□□□□□ -0.24
CCDC40-209ENST00000573474 CLDN23Q96B33 292 aa13.55□□□□□ -0.24
CCDC40-209ENST00000573474 C1QTNF1Q9BXJ1 281 aa13.55□□□□□ -0.24
CCDC40-209ENST00000573474 C1QTNF2Q9BXJ5 285 aa13.55□□□□□ -0.24
CCDC40-209ENST00000573474 GPAMQ9HCL2 828 aa13.55□□□□□ -0.24
CCDC40-209ENST00000573474 ITM2CQ9NQX7 267 aa13.55□□□□□ -0.24
CCDC40-209ENST00000573474 MUTYHQ9UIF7 546 aa13.55□□□□□ -0.24
CCDC40-209ENST00000573474 ZFR2Q9UPR6 939 aaKnown RBP13.55□□□□□ -0.24
CCDC40-209ENST00000573474 RUVBL2Q9Y230 463 aaKnown RBP13.55□□□□□ -0.24
CCDC40-209ENST00000573474 PRSS21Q9Y6M0 314 aa13.55□□□□□ -0.24
CCDC40-209ENST00000573474 TBC1D3DA0A087WVF3 549 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 TBC1D3IA0A087WXS9 549 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 TBC1D3EA0A087X179 549 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 TBC1D3KA0A087X1G2 549 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 A0A1W2PQU0 124 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 TBC1D3FA6NER0 549 aaPredicted RBP13.54□□□□□ -0.24
CCDC40-209ENST00000573474 TBC1D3LB9A6J9 549 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 E5RI56 91 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 F8W8V4 182 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 AP2A2O94973 939 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 KLHL2O95198 593 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 SLC25A14O95258 325 aaPredicted RBP13.54□□□□□ -0.24
CCDC40-209ENST00000573474 WISP3O95389 354 aaPredicted RBP13.54□□□□□ -0.24
CCDC40-209ENST00000573474 ASMTLO95671 621 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 TBC1D3HP0C7X1 549 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 ATP1B2P14415 290 aaPredicted RBP13.54□□□□□ -0.24
CCDC40-209ENST00000573474 CHRM3P20309 590 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 MSH3P20585 1137 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 AKT1P31749 480 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 ETV4P43268 484 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 TPMTP51580 245 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 PGGT1BP53609 377 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 B4GALNT1Q00973 533 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 GAS6Q14393 721 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 LRRC14Q15048 493 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 FAM83EQ2M2I3 478 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 TSNAXIP1Q2TAA8 658 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 MAP7D1Q3KQU3 841 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 CCDC153Q494R4 210 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 TMEM259Q4ZIN3 620 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 N4BP2L1Q5TBK1 243 aaPredicted RBP13.54□□□□□ -0.24
CCDC40-209ENST00000573474 SEL1L3Q68CR1 1132 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 TBC1D3GQ6DHY5 549 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 RAET1GQ6H3X3 334 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 TBC1D3CQ6IPX1 549 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 FAM124AQ86V42 546 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 PIM3Q86V86 326 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 HORMAD1Q86X24 394 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 TBC1D3Q8IZP1 549 aaPredicted RBP13.54□□□□□ -0.24
CCDC40-209ENST00000573474 PLD6Q8N2A8 252 aaKnown RBP13.54□□□□□ -0.24
CCDC40-209ENST00000573474 PGBD3Q8N328 593 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 TSTD1Q8NFU3 115 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 DYDC1Q8WWB3 177 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 CCDC97Q96F63 343 aaPredicted RBP13.54□□□□□ -0.24
CCDC40-209ENST00000573474 UBXN10Q96LJ8 280 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 FAM111AQ96PZ2 611 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 GPR21Q99679 349 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 PAIP2Q9BPZ3 127 aaKnown RBP13.54□□□□□ -0.24
CCDC40-209ENST00000573474 C1QTNF7Q9BXJ2 289 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 C12orf65Q9H3J6 166 aaKnown RBP13.54□□□□□ -0.24
CCDC40-209ENST00000573474 SGK2Q9HBY8 427 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 SYTL2Q9HCH5 934 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 MLXIPLQ9NP71 852 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 USP36Q9P275 1121 aaKnown RBP13.54□□□□□ -0.24
CCDC40-209ENST00000573474 TRMT6Q9UJA5 497 aaKnown RBP13.54□□□□□ -0.24
CCDC40-209ENST00000573474 CNOT6Q9ULM6 557 aaKnown RBP13.54□□□□□ -0.24
CCDC40-209ENST00000573474 MED16Q9Y2X0 877 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 OAS3Q9Y6K5 1087 aaKnown RBP13.54□□□□□ -0.24
CCDC40-209ENST00000573474 BPTFQ12830 3046 aa13.54□□□□□ -0.24
CCDC40-209ENST00000573474 PLXNA2O75051 1894 aa13.53□□□□□ -0.24
CCDC40-209ENST00000573474 LRRC72A6NJI9 287 aa13.53□□□□□ -0.24
CCDC40-209ENST00000573474 PLIN3O60664 434 aa13.53□□□□□ -0.24
CCDC40-209ENST00000573474 NIPSNAP2O75323 286 aa13.53□□□□□ -0.24
CCDC40-209ENST00000573474 TOP3BO95985 862 aaKnown RBP13.53□□□□□ -0.24
CCDC40-209ENST00000573474 SOD1P00441 154 aa13.53□□□□□ -0.24
CCDC40-209ENST00000573474 IGLV3-19P01714 112 aa13.53□□□□□ -0.24
CCDC40-209ENST00000573474 APOA4P06727 396 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms