RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 CERCAMQ5T4B2 595 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 HENMT1Q5T8I9 393 aaKnown RBP8.03□□□□□ -1.12
VPS53-214ENST00000572607 KCTD16Q68DU8 428 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 OGFOD3Q6PK18 319 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 KDELC1Q6UW63 502 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 LRRC69Q6ZNQ3 347 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 ARHGEF18Q6ZSZ5 1173 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 GLT6D1Q7Z4J2 308 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 TMC3Q7Z5M5 1100 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 CCNJLQ8IV13 435 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 GPR156Q8NFN8 814 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 CCL4L1Q8NHW4 92 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 BLOC1S5Q8TDH9 187 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 GPBAR1Q8TDU6 330 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 ALG3Q92685 438 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 TADA1Q96BN2 335 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 COX14Q96I36 57 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 SPATA13Q96N96 652 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 FICDQ9BVA6 458 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 STRADBQ9C0K7 418 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 GBA3Q9H227 469 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.03□□□□□ -1.12
VPS53-214ENST00000572607 LRIT1Q9P2V4 623 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 NFKBIL1Q9UBC1 381 aaPredicted RBP8.03□□□□□ -1.12
VPS53-214ENST00000572607 TRIM10Q9UDY6 481 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 ZNHIT2Q9UHR6 403 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 GUCA1BQ9UMX6 200 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 PACSIN2Q9UNF0 486 aaPredicted RBP8.03□□□□□ -1.12
VPS53-214ENST00000572607 PCDHB1Q9Y5F3 818 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 MAST4O15021 2626 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 ANKRD36A6QL64 1941 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 C2orf81A6NN90 581 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 FADS2P1A8MWK0 482 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 GPR89AB7ZAQ6 455 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 RRP8O43159 456 aaKnown RBP8.02□□□□□ -1.13
VPS53-214ENST00000572607 GRID2O43424 1007 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 NOBOXO60393 691 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 SLC25A14O95258 325 aaPredicted RBP8.02□□□□□ -1.13
VPS53-214ENST00000572607 PRB1P04280 392 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 ATP1A1P05023 1023 aaKnown RBP8.02□□□□□ -1.13
VPS53-214ENST00000572607 GPR89BP0CG08 455 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 AK4P27144 223 aaPredicted RBP8.02□□□□□ -1.13
VPS53-214ENST00000572607 RBMS1P29558 406 aaKnown RBP8.02□□□□□ -1.13
VPS53-214ENST00000572607 HMGCLP35914 325 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 INHBCP55103 352 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 HLTFQ14527 1009 aaKnown RBP eCLIP8.02□□□□□ -1.13
VPS53-214ENST00000572607 SLC1A5Q15758 541 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 MAP9Q49MG5 647 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 PYCR3Q53H96 274 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 C3orf38Q5JPI3 329 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 SIRPB2Q5JXA9 342 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 ANKRD20A2Q5SQ80 823 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 FAM182AQ5T1J6 154 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 ANKRD20A1Q5TYW2 823 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 ANKRD20A3Q5VUR7 823 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 CHST15Q7LFX5 561 aaPredicted RBP8.02□□□□□ -1.13
VPS53-214ENST00000572607 CCDC116Q8IYX3 515 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 Q8N9G6 341 aaPredicted RBP8.02□□□□□ -1.13
VPS53-214ENST00000572607 GPR26Q8NDV2 337 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 GDAP1Q8TB36 358 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 HNRNPLLQ8WVV9 542 aaKnown RBP8.02□□□□□ -1.13
VPS53-214ENST00000572607 GLYATL1Q969I3 302 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 SCARF2Q96GP6 870 aaPredicted RBP8.02□□□□□ -1.13
VPS53-214ENST00000572607 OXNAD1Q96HP4 312 aaPredicted RBP8.02□□□□□ -1.13
VPS53-214ENST00000572607 TTC25Q96NG3 672 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 TMEM74Q96NL1 305 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 PLEKHG4BQ96PX9 1271 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 FAM118BQ9BPY3 351 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 HERPUD2Q9BSE4 406 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 ZCCHC2Q9C0B9 1178 aaKnown RBP8.02□□□□□ -1.13
VPS53-214ENST00000572607 CARD9Q9H257 536 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 LRRN3Q9H3W5 708 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 C10orf88Q9H8K7 445 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 POLR1BQ9H9Y6 1135 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 EPB41L5Q9HCM4 733 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 TRIM39Q9HCM9 518 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 THSD1Q9NS62 852 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 SPATS2LQ9NUQ6 558 aaKnown RBP8.02□□□□□ -1.13
VPS53-214ENST00000572607 AKAP7Q9P0M2 348 aaPredicted RBP8.02□□□□□ -1.13
VPS53-214ENST00000572607 APPL1Q9UKG1 709 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 PKP3Q9Y446 797 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 SPO11Q9Y5K1 396 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 CAPN6Q9Y6Q1 641 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 RNF215Q9Y6U7 377 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 DOCK9Q9BZ29 2069 aa8.02□□□□□ -1.13
VPS53-214ENST00000572607 KNTC1P50748 2209 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 CCDC187A0A096LP49 1063 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 GLYATL1P3A0A0U1RQE8 302 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 A0A0U1RQJ8 604 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 NTN3O00634 580 aaPredicted RBP8.01□□□□□ -1.13
VPS53-214ENST00000572607 STX7O15400 261 aaKnown RBP8.01□□□□□ -1.13
VPS53-214ENST00000572607 DDX3YO15523 660 aaKnown RBP8.01□□□□□ -1.13
VPS53-214ENST00000572607 VEGFDO43915 354 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 NUAK1O60285 661 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 BRINP1O60477 761 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 SNX2O60749 519 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 PPFIA2O75334 1257 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 ECEL1O95672 775 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 CRTAMO95727 393 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 MPOP05164 745 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms