RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 PHYKPLQ8IUZ5 450 aa20.41■□□□□ 0.86
VPS53-210ENST00000571456 GALNT15Q8N3T1 639 aa20.41■□□□□ 0.86
VPS53-210ENST00000571456 SDR16C5Q8N3Y7 309 aa20.41■□□□□ 0.86
VPS53-210ENST00000571456 OR56A4Q8NGH8 313 aa20.41■□□□□ 0.86
VPS53-210ENST00000571456 HEXDCQ8WVB3 486 aa20.41■□□□□ 0.86
VPS53-210ENST00000571456 GLYATL1Q969I3 302 aa20.41■□□□□ 0.86
VPS53-210ENST00000571456 COX14Q96I36 57 aa20.41■□□□□ 0.86
VPS53-210ENST00000571456 ZCCHC2Q9C0B9 1178 aaKnown RBP20.41■□□□□ 0.86
VPS53-210ENST00000571456 PRORYQ9H606 182 aa20.41■□□□□ 0.86
VPS53-210ENST00000571456 GAREM1Q9H706 876 aa20.41■□□□□ 0.86
VPS53-210ENST00000571456 BPIFA1Q9NP55 256 aa20.41■□□□□ 0.86
VPS53-210ENST00000571456 ANAPC5Q9UJX4 755 aa20.41■□□□□ 0.86
VPS53-210ENST00000571456 SOX13Q9UN79 622 aa20.41■□□□□ 0.86
VPS53-210ENST00000571456 OR1A2Q9Y585 309 aa20.41■□□□□ 0.86
VPS53-210ENST00000571456 DGKBQ9Y6T7 804 aa20.41■□□□□ 0.86
VPS53-210ENST00000571456 A0A1B0GTQ1 180 aa20.4■□□□□ 0.86
VPS53-210ENST00000571456 AGAP14A8MT82 685 aa20.4■□□□□ 0.86
VPS53-210ENST00000571456 K7ESM1 405 aa20.4■□□□□ 0.86
VPS53-210ENST00000571456 PCDHGA12O60330 932 aa20.4■□□□□ 0.86
VPS53-210ENST00000571456 SRP72O76094 671 aaKnown RBP20.4■□□□□ 0.86
VPS53-210ENST00000571456 DKK1O94907 266 aa20.4■□□□□ 0.86
VPS53-210ENST00000571456 RASGRP1O95267 797 aa20.4■□□□□ 0.86
VPS53-210ENST00000571456 PRAMEF1O95521 474 aa20.4■□□□□ 0.86
VPS53-210ENST00000571456 CSF2P04141 144 aa20.4■□□□□ 0.86
VPS53-210ENST00000571456 NME1P15531 152 aaKnown RBP20.4■□□□□ 0.86
VPS53-210ENST00000571456 PAMP19021 973 aa20.4■□□□□ 0.86
VPS53-210ENST00000571456 SUZ12Q15022 739 aaKnown RBP20.4■□□□□ 0.86
VPS53-210ENST00000571456 LDLRAP1Q5SW96 308 aa20.4■□□□□ 0.86
VPS53-210ENST00000571456 ALS2CLQ60I27 953 aa20.4■□□□□ 0.86
VPS53-210ENST00000571456 RFLNAQ6ZTI6 216 aa20.4■□□□□ 0.86
VPS53-210ENST00000571456 SNX20Q7Z614 316 aa20.4■□□□□ 0.86
VPS53-210ENST00000571456 ZNF398Q8TD17 642 aa20.4■□□□□ 0.86
VPS53-210ENST00000571456 CDKN2AIPNLQ96HQ2 116 aa20.4■□□□□ 0.86
VPS53-210ENST00000571456 FOXP3Q9BZS1 431 aa20.4■□□□□ 0.86
VPS53-210ENST00000571456 PHACTR1Q9C0D0 580 aa20.4■□□□□ 0.86
VPS53-210ENST00000571456 PIH1D1Q9NWS0 290 aaKnown RBP20.4■□□□□ 0.86
VPS53-210ENST00000571456 TOR4AQ9NXH8 423 aa20.4■□□□□ 0.86
VPS53-210ENST00000571456 KLQ9UEF7 1012 aa20.4■□□□□ 0.86
VPS53-210ENST00000571456 SLC17A4Q9Y2C5 497 aa20.4■□□□□ 0.86
VPS53-210ENST00000571456 SLC30A1Q9Y6M5 507 aa20.4■□□□□ 0.86
VPS53-210ENST00000571456 UNC79Q9P2D8 2635 aa20.4■□□□□ 0.86
VPS53-210ENST00000571456 PTPN13Q12923 2485 aa20.39■□□□□ 0.86
VPS53-210ENST00000571456 FAM237BA0A1B0GVD1 139 aa20.39■□□□□ 0.85
VPS53-210ENST00000571456 GOLGA8CPA6NN73 597 aa20.39■□□□□ 0.85
VPS53-210ENST00000571456 VEGFDO43915 354 aa20.39■□□□□ 0.85
VPS53-210ENST00000571456 SLC25A14O95258 325 aaPredicted RBP20.39■□□□□ 0.85
VPS53-210ENST00000571456 MGAT1P26572 445 aa20.39■□□□□ 0.85
VPS53-210ENST00000571456 RPL21P46778 160 aaKnown RBP20.39■□□□□ 0.85
VPS53-210ENST00000571456 ITGA8P53708 1063 aa20.39■□□□□ 0.85
VPS53-210ENST00000571456 PPARDQ03181 441 aa20.39■□□□□ 0.85
VPS53-210ENST00000571456 NFATC2Q13469 925 aa20.39■□□□□ 0.85
VPS53-210ENST00000571456 INAVAQ3KP66 663 aa20.39■□□□□ 0.85
VPS53-210ENST00000571456 LAYNQ6UX15 382 aa20.39■□□□□ 0.85
VPS53-210ENST00000571456 OR13C4Q8NGS5 318 aa20.39■□□□□ 0.85
VPS53-210ENST00000571456 SEC14L1Q92503 715 aa20.39■□□□□ 0.85
VPS53-210ENST00000571456 TBRG4Q969Z0 631 aaKnown RBP eCLIP20.39■□□□□ 0.85
VPS53-210ENST00000571456 DNAJC1Q96KC8 554 aaKnown RBP20.39■□□□□ 0.85
VPS53-210ENST00000571456 TTC1Q99614 292 aa20.39■□□□□ 0.85
VPS53-210ENST00000571456 TRIM39Q9HCM9 518 aa20.39■□□□□ 0.85
VPS53-210ENST00000571456 FKBPLQ9UIM3 349 aa20.39■□□□□ 0.85
VPS53-210ENST00000571456 PIEZO2Q9H5I5 2752 aa20.39■□□□□ 0.85
VPS53-210ENST00000571456 LRP4O75096 1905 aa20.38■□□□□ 0.85
VPS53-210ENST00000571456 FADS2P1A8MWK0 482 aa20.38■□□□□ 0.85
VPS53-210ENST00000571456 TTC4O95801 387 aa20.38■□□□□ 0.85
VPS53-210ENST00000571456 IVLP07476 585 aa20.38■□□□□ 0.85
VPS53-210ENST00000571456 ITPKBP27987 946 aa20.38■□□□□ 0.85
VPS53-210ENST00000571456 PPARGP37231 505 aaPredicted RBP20.38■□□□□ 0.85
VPS53-210ENST00000571456 ARL4CP56559 192 aa20.38■□□□□ 0.85
VPS53-210ENST00000571456 PRAMEP78395 509 aa20.38■□□□□ 0.85
VPS53-210ENST00000571456 XIAPP98170 497 aa20.38■□□□□ 0.85
VPS53-210ENST00000571456 CACNG1Q06432 222 aa20.38■□□□□ 0.85
VPS53-210ENST00000571456 PEX6Q13608 980 aa20.38■□□□□ 0.85
VPS53-210ENST00000571456 HIF1AQ16665 826 aa20.38■□□□□ 0.85
VPS53-210ENST00000571456 AFTPHQ6ULP2 937 aa20.38■□□□□ 0.85
VPS53-210ENST00000571456 ENPP7Q6UWV6 458 aa20.38■□□□□ 0.85
VPS53-210ENST00000571456 FAM151BQ6UXP7 276 aa20.38■□□□□ 0.85
VPS53-210ENST00000571456 CEP128Q6ZU80 1094 aa20.38■□□□□ 0.85
VPS53-210ENST00000571456 FSTL5Q8N475 847 aaPredicted RBP20.38■□□□□ 0.85
VPS53-210ENST00000571456 BAHD1Q8TBE0 780 aaPredicted RBP20.38■□□□□ 0.85
VPS53-210ENST00000571456 SCG3Q8WXD2 468 aaKnown RBP20.38■□□□□ 0.85
VPS53-210ENST00000571456 SCARF2Q96GP6 870 aaPredicted RBP20.38■□□□□ 0.85
VPS53-210ENST00000571456 AGAP2Q99490 1192 aa20.38■□□□□ 0.85
VPS53-210ENST00000571456 SLC13A1Q9BZW2 595 aa20.38■□□□□ 0.85
VPS53-210ENST00000571456 TRIM31Q9BZY9 425 aa20.38■□□□□ 0.85
VPS53-210ENST00000571456 ASB8Q9H765 288 aa20.38■□□□□ 0.85
VPS53-210ENST00000571456 SYBUQ9NX95 663 aa20.38■□□□□ 0.85
VPS53-210ENST00000571456 CNOT6Q9ULM6 557 aaKnown RBP20.38■□□□□ 0.85
VPS53-210ENST00000571456 SNX24Q9Y343 169 aa20.38■□□□□ 0.85
VPS53-210ENST00000571456 KCTD3Q9Y597 815 aa20.38■□□□□ 0.85
VPS53-210ENST00000571456 NEMP2A6NFY4 417 aa20.37■□□□□ 0.85
VPS53-210ENST00000571456 GOLGA8MH3BSY2 632 aa20.37■□□□□ 0.85
VPS53-210ENST00000571456 EIF3HO15372 352 aaKnown RBP eCLIP20.37■□□□□ 0.857e-7■□□□□ 9.9
VPS53-210ENST00000571456 BUD23O43709 281 aaKnown RBP20.37■□□□□ 0.85
VPS53-210ENST00000571456 TNFP01375 233 aa20.37■□□□□ 0.85
VPS53-210ENST00000571456 MC4RP32245 332 aa20.37■□□□□ 0.85
VPS53-210ENST00000571456 HK3P52790 923 aa20.37■□□□□ 0.85
VPS53-210ENST00000571456 SRP54P61011 504 aaKnown RBP20.37■□□□□ 0.85
VPS53-210ENST00000571456 CHRNA6Q15825 494 aa20.37■□□□□ 0.85
VPS53-210ENST00000571456 ATP13A5Q4VNC0 1218 aa20.37■□□□□ 0.85
VPS53-210ENST00000571456 CCDC38Q502W7 563 aa20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms