RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 IQCDQ96DY2 449 aa10.92□□□□□ -0.66
VPS53-207ENST00000570510 SMAD5Q99717 465 aaKnown RBP10.92□□□□□ -0.66
VPS53-207ENST00000570510 NAA15Q9BXJ9 866 aaKnown RBP10.92□□□□□ -0.66
VPS53-207ENST00000570510 ABCG8Q9H221 673 aa10.92□□□□□ -0.66
VPS53-207ENST00000570510 AKIRIN1Q9H9L7 192 aaPredicted RBP10.92□□□□□ -0.66
VPS53-207ENST00000570510 SIX2Q9NPC8 291 aa10.92□□□□□ -0.66
VPS53-207ENST00000570510 WASH6PQ9NQA3 447 aa10.92□□□□□ -0.66
VPS53-207ENST00000570510 A0A1B0GUH1 482 aa10.91□□□□□ -0.66
VPS53-207ENST00000570510 NPIPB15A6NHN6 443 aaPredicted RBP10.91□□□□□ -0.66
VPS53-207ENST00000570510 C2CD4BA6NLJ0 364 aa10.91□□□□□ -0.66
VPS53-207ENST00000570510 PDZK1P1A8MUH7 402 aa10.91□□□□□ -0.66
VPS53-207ENST00000570510 TIAF1O95411 115 aa10.91□□□□□ -0.66
VPS53-207ENST00000570510 CTPS1P17812 591 aa10.91□□□□□ -0.66
VPS53-207ENST00000570510 CDK11BP21127 795 aaKnown RBP10.91□□□□□ -0.66
VPS53-207ENST00000570510 PTGER4P35408 488 aa10.91□□□□□ -0.66
VPS53-207ENST00000570510 ZNF165P49910 485 aa10.91□□□□□ -0.66
VPS53-207ENST00000570510 TPM4P67936 248 aa10.91□□□□□ -0.66
VPS53-207ENST00000570510 FILIP1LQ4L180 1135 aa10.91□□□□□ -0.66
VPS53-207ENST00000570510 ARMC12Q5T9G4 340 aa10.91□□□□□ -0.66
VPS53-207ENST00000570510 PPP1R2P3Q6NXS1 205 aa10.91□□□□□ -0.66
VPS53-207ENST00000570510 CAVIN1Q6NZI2 390 aaKnown RBP10.91□□□□□ -0.66
VPS53-207ENST00000570510 PRSS42Q7Z5A4 293 aa10.91□□□□□ -0.66
VPS53-207ENST00000570510 TSPAN33Q86UF1 283 aa10.91□□□□□ -0.66
VPS53-207ENST00000570510 FJX1Q86VR8 437 aa10.91□□□□□ -0.66
VPS53-207ENST00000570510 CLEC1AQ8NC01 280 aa10.91□□□□□ -0.66
VPS53-207ENST00000570510 JOSD2Q8TAC2 188 aa10.91□□□□□ -0.66
VPS53-207ENST00000570510 KLHL6Q8WZ60 621 aa10.91□□□□□ -0.66
VPS53-207ENST00000570510 SCRN2Q96FV2 425 aa10.91□□□□□ -0.66
VPS53-207ENST00000570510 PLEKHG4BQ96PX9 1271 aa10.91□□□□□ -0.66
VPS53-207ENST00000570510 MLPHQ9BV36 600 aaPredicted RBP10.91□□□□□ -0.66
VPS53-207ENST00000570510 SELENOOQ9BVL4 669 aa10.91□□□□□ -0.66
VPS53-207ENST00000570510 SLC39A8Q9C0K1 460 aa10.91□□□□□ -0.66
VPS53-207ENST00000570510 LRRC19Q9H756 370 aa10.91□□□□□ -0.66
VPS53-207ENST00000570510 RMI1Q9H9A7 625 aa10.91□□□□□ -0.66
VPS53-207ENST00000570510 UCK1Q9HA47 277 aa10.91□□□□□ -0.66
VPS53-207ENST00000570510 RTN4Q9NQC3 1192 aaKnown RBP10.91□□□□□ -0.66
VPS53-207ENST00000570510 LATS2Q9NRM7 1088 aa10.91□□□□□ -0.66
VPS53-207ENST00000570510 FANCLQ9NW38 375 aa10.91□□□□□ -0.66
VPS53-207ENST00000570510 VPS18Q9P253 973 aa10.91□□□□□ -0.66
VPS53-207ENST00000570510 CELSR1Q9NYQ6 3014 aa10.9□□□□□ -0.66
VPS53-207ENST00000570510 TTC24A2A3L6 582 aaPredicted RBP10.9□□□□□ -0.66
VPS53-207ENST00000570510 GRID2O43424 1007 aa10.9□□□□□ -0.66
VPS53-207ENST00000570510 SCRG1O75711 98 aa10.9□□□□□ -0.66
VPS53-207ENST00000570510 MTA2O94776 668 aa10.9□□□□□ -0.66
VPS53-207ENST00000570510 IPO13O94829 963 aaKnown RBP10.9□□□□□ -0.66
VPS53-207ENST00000570510 XRCC1P18887 633 aaPredicted RBP10.9□□□□□ -0.66
VPS53-207ENST00000570510 GPD1P21695 349 aa10.9□□□□□ -0.66
VPS53-207ENST00000570510 LHCGRP22888 699 aa10.9□□□□□ -0.66
VPS53-207ENST00000570510 HNRNPH3P31942 346 aaKnown RBP10.9□□□□□ -0.66
VPS53-207ENST00000570510 CAPZBP47756 277 aa10.9□□□□□ -0.66
VPS53-207ENST00000570510 EPHB1P54762 984 aa10.9□□□□□ -0.66
VPS53-207ENST00000570510 AIF1P55008 147 aa10.9□□□□□ -0.66
VPS53-207ENST00000570510 GSDMDP57764 484 aa10.9□□□□□ -0.66
VPS53-207ENST00000570510 IL10RBQ08334 325 aa10.9□□□□□ -0.66
VPS53-207ENST00000570510 KCNAB1Q14722 419 aa10.9□□□□□ -0.66
VPS53-207ENST00000570510 LBRQ14739 615 aaKnown RBP10.9□□□□□ -0.66
VPS53-207ENST00000570510 SEPT7Q16181 437 aaKnown RBP10.9□□□□□ -0.66
VPS53-207ENST00000570510 VWA2Q5GFL6 755 aa10.9□□□□□ -0.66
VPS53-207ENST00000570510 IZUMO3Q5VZ72 239 aa10.9□□□□□ -0.66
VPS53-207ENST00000570510 TRIM72Q6ZMU5 477 aa10.9□□□□□ -0.66
VPS53-207ENST00000570510 TECPR1Q7Z6L1 1165 aa10.9□□□□□ -0.66
VPS53-207ENST00000570510 RAB43Q86YS6 212 aa10.9□□□□□ -0.66
VPS53-207ENST00000570510 PARP9Q8IXQ6 854 aa10.9□□□□□ -0.66
VPS53-207ENST00000570510 ENDOVQ8N8Q3 282 aaKnown RBP10.9□□□□□ -0.66
VPS53-207ENST00000570510 GLIS1Q8NBF1 620 aa10.9□□□□□ -0.66
VPS53-207ENST00000570510 NSMCE1Q8WV22 266 aa10.9□□□□□ -0.66
VPS53-207ENST00000570510 UBXN4Q92575 508 aa10.9□□□□□ -0.66
VPS53-207ENST00000570510 CENPIQ92674 756 aaPredicted RBP10.9□□□□□ -0.66
VPS53-207ENST00000570510 CXorf40BQ96DE9 158 aa10.9□□□□□ -0.66
VPS53-207ENST00000570510 POM121Q96HA1 1249 aa10.9□□□□□ -0.66
VPS53-207ENST00000570510 PSKH2Q96QS6 385 aa10.9□□□□□ -0.66
VPS53-207ENST00000570510 C11orf70Q9BRQ4 267 aa10.9□□□□□ -0.66
VPS53-207ENST00000570510 RIOK2Q9BVS4 552 aaKnown RBP10.9□□□□□ -0.66
VPS53-207ENST00000570510 SLC7A5P2Q9GIP4 190 aa10.9□□□□□ -0.66
VPS53-207ENST00000570510 CHST8Q9H2A9 424 aa10.9□□□□□ -0.66
VPS53-207ENST00000570510 CHST11Q9NPF2 352 aa10.9□□□□□ -0.66
VPS53-207ENST00000570510 FGF21Q9NSA1 209 aa10.9□□□□□ -0.66
VPS53-207ENST00000570510 KLC4Q9NSK0 619 aa10.9□□□□□ -0.66
VPS53-207ENST00000570510 OGFRQ9NZT2 677 aa10.9□□□□□ -0.66
VPS53-207ENST00000570510 TCFL5Q9UL49 500 aa10.9□□□□□ -0.66
VPS53-207ENST00000570510 SLC30A1Q9Y6M5 507 aa10.9□□□□□ -0.66
VPS53-207ENST00000570510 UBA6A0AVT1 1052 aaPredicted RBP10.89□□□□□ -0.67
VPS53-207ENST00000570510 EEF2KO00418 725 aaKnown RBP10.89□□□□□ -0.67
VPS53-207ENST00000570510 HTRA2O43464 458 aaPredicted RBP10.89□□□□□ -0.67
VPS53-207ENST00000570510 DNAJC6O75061 913 aa10.89□□□□□ -0.67
VPS53-207ENST00000570510 SOD1P00441 154 aa10.89□□□□□ -0.67
VPS53-207ENST00000570510 MMEP08473 750 aa10.89□□□□□ -0.67
VPS53-207ENST00000570510 FOLR1P15328 257 aa10.89□□□□□ -0.67
VPS53-207ENST00000570510 HTR7P34969 479 aa10.89□□□□□ -0.67
VPS53-207ENST00000570510 RFC1P35251 1148 aaPredicted RBP10.89□□□□□ -0.67
VPS53-207ENST00000570510 HSPA9P38646 679 aaKnown RBP10.89□□□□□ -0.67
VPS53-207ENST00000570510 UBE2IP63279 158 aaKnown RBP10.89□□□□□ -0.67
VPS53-207ENST00000570510 NOMO3P69849 1222 aa10.89□□□□□ -0.67
VPS53-207ENST00000570510 ATP1A4Q13733 1029 aa10.89□□□□□ -0.67
VPS53-207ENST00000570510 INSCQ1MX18 579 aa10.89□□□□□ -0.67
VPS53-207ENST00000570510 TDRD12Q587J7 1177 aaKnown RBP10.89□□□□□ -0.67
VPS53-207ENST00000570510 LRRC66Q68CR7 880 aa10.89□□□□□ -0.67
VPS53-207ENST00000570510 KLHL35Q6PF15 583 aa10.89□□□□□ -0.67
VPS53-207ENST00000570510 ZNF765Q7L2R6 523 aa10.89□□□□□ -0.67
VPS53-207ENST00000570510 NXPE1Q8N323 547 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms