RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 SAYSD1Q9NPB0 183 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 MRPL40Q9NQ50 206 aaKnown RBP9.2□□□□□ -0.94
VPS35-211ENST00000569950 AASDHPPTQ9NRN7 309 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 RAD18Q9NS91 495 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 ATXN10Q9UBB4 475 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 APPL1Q9UKG1 709 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 MED16Q9Y2X0 877 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 TMEM98Q9Y2Y6 226 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 HCN4Q9Y3Q4 1203 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 PSAT1Q9Y617 370 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 MAD1L1Q9Y6D9 718 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 PRSS21Q9Y6M0 314 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 COL27A1Q8IZC6 1860 aaPredicted RBP9.19□□□□□ -0.94
VPS35-211ENST00000569950 CXorf49A8MYA2 514 aaPredicted RBP9.19□□□□□ -0.94
VPS35-211ENST00000569950 CDX4O14627 284 aaPredicted RBP9.19□□□□□ -0.94
VPS35-211ENST00000569950 TOR1BO14657 336 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 NDC80O14777 642 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 OR1I1O60431 355 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 S1PR4O95977 384 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 CELA2BP08218 269 aaPredicted RBP9.19□□□□□ -0.94
VPS35-211ENST00000569950 NME1P15531 152 aaKnown RBP9.19□□□□□ -0.94
VPS35-211ENST00000569950 ZNF8P17098 575 aaPredicted RBP9.19□□□□□ -0.94
VPS35-211ENST00000569950 ACRV1P26436 265 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 TIAL1Q01085 375 aaKnown RBP eCLIP9.19□□□□□ -0.94
VPS35-211ENST00000569950 CACNG1Q06432 222 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 STAT4Q14765 748 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 KYNUQ16719 465 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 GPR33Q49SQ1 333 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 ZNF542PQ5EBM4 170 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 TRIM61Q5EBN2 209 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 SPANXN3Q5MJ09 141 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 TEDDM1Q5T9Z0 273 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 ZDHHC20Q5W0Z9 365 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 WDR93Q6P2C0 686 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 CASC4Q6P4E1 433 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 AFTPHQ6ULP2 937 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 NRROSQ86YC3 692 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 IFT20Q8IY31 132 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 RBFAQ8N0V3 343 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 OR4L1Q8NH43 312 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 FAM174AQ8TBP5 190 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 AENQ8WTP8 325 aaKnown RBP9.19□□□□□ -0.94
VPS35-211ENST00000569950 LPGAT1Q92604 370 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 RUBCNQ92622 972 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 KLHDC7BQ96G42 594 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 FMO2Q99518 471 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 NAT9Q9BTE0 207 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 CLPBQ9H078 707 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 IRF2BPLQ9H1B7 796 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 P2RY12Q9H244 342 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 CDC42EP4Q9H3Q1 356 aaKnown RBP9.19□□□□□ -0.94
VPS35-211ENST00000569950 ERVMER34-1Q9H9K5 563 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 TM7SF3Q9NS93 570 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 VPS18Q9P253 973 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 SLC23A2Q9UGH3 650 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 ZC3H7BQ9UGR2 993 aaKnown RBP9.19□□□□□ -0.94
VPS35-211ENST00000569950 SUSD2Q9UGT4 822 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 RAB21Q9UL25 225 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 SLC6A14Q9UN76 642 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 PLEKHM1Q9Y4G2 1056 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.19□□□□□ -0.94
VPS35-211ENST00000569950 DGKBQ9Y6T7 804 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 RP1P56715 2156 aa9.19□□□□□ -0.94
VPS35-211ENST00000569950 TCRBV9S1A1TA0A576 114 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 PRSS38A1L453 326 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 FAM159BA6NKW6 160 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 PRR5-ARHGAP8B1AHC4 643 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 ARHGAP33O14559 1287 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 TNFRSF10CO14798 259 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 CD3EAPO15446 510 aaKnown RBP9.18□□□□□ -0.94
VPS35-211ENST00000569950 CTIFO43310 598 aaKnown RBP9.18□□□□□ -0.94
VPS35-211ENST00000569950 NUAK1O60285 661 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 TTC4O95801 387 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 CSF2P04141 144 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 PYGLP06737 847 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 POLBP06746 335 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 IVLP07476 585 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 ERVK-10P10266 1014 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 COL5A1P20908 1838 aaPredicted RBP9.18□□□□□ -0.94
VPS35-211ENST00000569950 DPP6P42658 865 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 SLC1A2P43004 574 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 RXRGP48443 463 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 SPEM2Q0P670 501 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 LAMB3Q13751 1172 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 ITGA9Q13797 1035 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 UAP1Q16222 522 aaPredicted RBP9.18□□□□□ -0.94
VPS35-211ENST00000569950 LONRF1Q17RB8 773 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 PYCR3Q53H96 274 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 HSP90AA5PQ58FG0 334 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 CTSL3PQ5NE16 218 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 NEPROQ6NW34 567 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 ZNF549Q6P9A3 640 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 PACS1Q6VY07 963 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 CYS1Q717R9 158 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 CCDC25Q86WR0 208 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 DCP2Q8IU60 420 aaKnown RBP9.18□□□□□ -0.94
VPS35-211ENST00000569950 CILP2Q8IUL8 1156 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 SFTPA2Q8IWL1 248 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 SLC25A45Q8N413 288 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 CLDN19Q8N6F1 224 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms