RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 PNLIPP16233 465 aa14.86□□□□□ -0.03
VPS39-210ENST00000568357 B4GALNT1Q00973 533 aa14.86□□□□□ -0.03
VPS39-210ENST00000568357 SPIDRQ14159 915 aa14.86□□□□□ -0.03
VPS39-210ENST00000568357 OASLQ15646 514 aaKnown RBP14.86□□□□□ -0.03
VPS39-210ENST00000568357 FAM151BQ6UXP7 276 aa14.86□□□□□ -0.03
VPS39-210ENST00000568357 TAB3Q8N5C8 712 aaPredicted RBP14.86□□□□□ -0.03
VPS39-210ENST00000568357 WDR48Q8TAF3 677 aa14.86□□□□□ -0.03
VPS39-210ENST00000568357 DTX3LQ8TDB6 740 aa14.86□□□□□ -0.03
VPS39-210ENST00000568357 NXPE2Q96DL1 559 aa14.86□□□□□ -0.03
VPS39-210ENST00000568357 ATXN7L3BQ96GX2 97 aa14.86□□□□□ -0.03
VPS39-210ENST00000568357 ALS2CR12Q96Q35 445 aa14.86□□□□□ -0.03
VPS39-210ENST00000568357 VPS35Q96QK1 796 aa14.86□□□□□ -0.03
VPS39-210ENST00000568357 TBL1YQ9BQ87 522 aa14.86□□□□□ -0.03
VPS39-210ENST00000568357 SYNDIG1Q9H7V2 258 aa14.86□□□□□ -0.03
VPS39-210ENST00000568357 ARNT2Q9HBZ2 717 aa14.86□□□□□ -0.03
VPS39-210ENST00000568357 KCNK6Q9Y257 313 aa14.86□□□□□ -0.03
VPS39-210ENST00000568357 PKP3Q9Y446 797 aa14.86□□□□□ -0.03
VPS39-210ENST00000568357 ENTPD2Q9Y5L3 495 aa14.86□□□□□ -0.03
VPS39-210ENST00000568357 KNTC1P50748 2209 aa14.86□□□□□ -0.03
VPS39-210ENST00000568357 STX7O15400 261 aaKnown RBP14.85□□□□□ -0.03
VPS39-210ENST00000568357 KALRNO60229 2985 aa14.85□□□□□ -0.03
VPS39-210ENST00000568357 MPOP05164 745 aa14.85□□□□□ -0.03
VPS39-210ENST00000568357 ACP5P13686 325 aa14.85□□□□□ -0.03
VPS39-210ENST00000568357 LPOP22079 712 aaPredicted RBP14.85□□□□□ -0.03
VPS39-210ENST00000568357 STIP1P31948 543 aaKnown RBP14.85□□□□□ -0.03
VPS39-210ENST00000568357 SPAM1P38567 509 aa14.85□□□□□ -0.03
VPS39-210ENST00000568357 OR1D5P58170 312 aa14.85□□□□□ -0.03
VPS39-210ENST00000568357 SNX1Q13596 522 aa14.85□□□□□ -0.03
VPS39-210ENST00000568357 SIX1Q15475 284 aaPredicted RBP14.85□□□□□ -0.03
VPS39-210ENST00000568357 TAF1AQ15573 450 aaPredicted RBP14.85□□□□□ -0.03
VPS39-210ENST00000568357 ZDHHC20Q5W0Z9 365 aa14.85□□□□□ -0.03
VPS39-210ENST00000568357 SPRED1Q7Z699 444 aa14.85□□□□□ -0.03
VPS39-210ENST00000568357 PRUNE1Q86TP1 453 aa14.85□□□□□ -0.03
VPS39-210ENST00000568357 PHYKPLQ8IUZ5 450 aa14.85□□□□□ -0.03
VPS39-210ENST00000568357 CCNJLQ8IV13 435 aa14.85□□□□□ -0.03
VPS39-210ENST00000568357 ZNF547Q8IVP9 402 aa14.85□□□□□ -0.03
VPS39-210ENST00000568357 TRIM58Q8NG06 486 aa14.85□□□□□ -0.03
VPS39-210ENST00000568357 BRSK1Q8TDC3 778 aa14.85□□□□□ -0.03
VPS39-210ENST00000568357 RTP4Q96DX8 246 aa14.85□□□□□ -0.03
VPS39-210ENST00000568357 PPP1R2P1Q96PQ5 205 aa14.85□□□□□ -0.03
VPS39-210ENST00000568357 GFM1Q96RP9 751 aaKnown RBP14.85□□□□□ -0.03
VPS39-210ENST00000568357 TBC1D29Q9UFV1 150 aa14.85□□□□□ -0.03
VPS39-210ENST00000568357 SLC23A2Q9UGH3 650 aa14.85□□□□□ -0.03
VPS39-210ENST00000568357 ATXN7L1Q9ULK2 861 aaPredicted RBP14.85□□□□□ -0.03
VPS39-210ENST00000568357 GLYATL1P3A0A0U1RQE8 302 aa14.84□□□□□ -0.03
VPS39-210ENST00000568357 PMS2P1A4D2B8 440 aa14.84□□□□□ -0.03
VPS39-210ENST00000568357 C2orf81A6NN90 581 aa14.84□□□□□ -0.03
VPS39-210ENST00000568357 RHPN2P1A8MT19 583 aa14.84□□□□□ -0.03
VPS39-210ENST00000568357 GPR89AB7ZAQ6 455 aa14.84□□□□□ -0.03
VPS39-210ENST00000568357 ATXN7O15265 892 aaPredicted RBP14.84□□□□□ -0.03
VPS39-210ENST00000568357 NRDCO43847 1150 aa14.84□□□□□ -0.03
VPS39-210ENST00000568357 BRINP1O60477 761 aa14.84□□□□□ -0.03
VPS39-210ENST00000568357 PPFIA2O75334 1257 aa14.84□□□□□ -0.03
VPS39-210ENST00000568357 CDK14O94921 469 aa14.84□□□□□ -0.03
VPS39-210ENST00000568357 GPR89BP0CG08 455 aa14.84□□□□□ -0.03
VPS39-210ENST00000568357 ETS1P14921 441 aa14.84□□□□□ -0.03
VPS39-210ENST00000568357 TPH1P17752 444 aa14.84□□□□□ -0.03
VPS39-210ENST00000568357 ALDH4A1P30038 563 aa14.84□□□□□ -0.03
VPS39-210ENST00000568357 TMEM115Q12893 351 aaPredicted RBP14.84□□□□□ -0.03
VPS39-210ENST00000568357 PEX6Q13608 980 aa14.84□□□□□ -0.03
VPS39-210ENST00000568357 CRTC3Q6UUV7 619 aa14.84□□□□□ -0.03
VPS39-210ENST00000568357 TMPRSS9Q7Z410 1059 aa14.84□□□□□ -0.03
VPS39-210ENST00000568357 ZNF438Q7Z4V0 828 aa14.84□□□□□ -0.03
VPS39-210ENST00000568357 B3GNT8Q7Z7M8 397 aa14.84□□□□□ -0.03
VPS39-210ENST00000568357 OR4K2Q8NGD2 314 aa14.84□□□□□ -0.03
VPS39-210ENST00000568357 ZNF398Q8TD17 642 aa14.84□□□□□ -0.03
VPS39-210ENST00000568357 DCBLD2Q96PD2 775 aa14.84□□□□□ -0.03
VPS39-210ENST00000568357 FRMD8P1Q9BZ68 369 aaPredicted RBP14.84□□□□□ -0.03
VPS39-210ENST00000568357 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.84□□□□□ -0.03
VPS39-210ENST00000568357 ZNF148Q9UQR1 794 aa14.84□□□□□ -0.03
VPS39-210ENST00000568357 A6NCN8 305 aa14.83□□□□□ -0.04
VPS39-210ENST00000568357 D6RAR5 112 aa14.83□□□□□ -0.04
VPS39-210ENST00000568357 TK2O00142 265 aa14.83□□□□□ -0.04
VPS39-210ENST00000568357 LDB2O43679 373 aa14.83□□□□□ -0.04
VPS39-210ENST00000568357 TLX3O43711 291 aaPredicted RBP14.83□□□□□ -0.04
VPS39-210ENST00000568357 VEGFDO43915 354 aa14.83□□□□□ -0.04
VPS39-210ENST00000568357 SNX2O60749 519 aa14.83□□□□□ -0.04
VPS39-210ENST00000568357 AP2A1O95782 977 aa14.83□□□□□ -0.04
VPS39-210ENST00000568357 CXCR5P32302 372 aa14.83□□□□□ -0.04
VPS39-210ENST00000568357 ABCG1P45844 678 aa14.83□□□□□ -0.04
VPS39-210ENST00000568357 LSSP48449 732 aa14.83□□□□□ -0.04
VPS39-210ENST00000568357 NR1D2Q14995 579 aa14.83□□□□□ -0.04
VPS39-210ENST00000568357 P3H1Q32P28 736 aa14.83□□□□□ -0.04
VPS39-210ENST00000568357 IYDQ6PHW0 289 aa14.83□□□□□ -0.04
VPS39-210ENST00000568357 ZNF605Q86T29 641 aa14.83□□□□□ -0.04
VPS39-210ENST00000568357 REXO1L1PQ8IX06 675 aa14.83□□□□□ -0.04
VPS39-210ENST00000568357 ZNF843Q8N446 348 aa14.83□□□□□ -0.04
VPS39-210ENST00000568357 SFRP1Q8N474 314 aa14.83□□□□□ -0.04
VPS39-210ENST00000568357 GLIS1Q8NBF1 620 aa14.83□□□□□ -0.04
VPS39-210ENST00000568357 GDAP1Q8TB36 358 aa14.83□□□□□ -0.04
VPS39-210ENST00000568357 SLC37A2Q8TED4 501 aa14.83□□□□□ -0.04
VPS39-210ENST00000568357 GRAMD1AQ96CP6 724 aa14.83□□□□□ -0.04
VPS39-210ENST00000568357 FOXP3Q9BZS1 431 aa14.83□□□□□ -0.04
VPS39-210ENST00000568357 KCNF1Q9H3M0 494 aa14.83□□□□□ -0.04
VPS39-210ENST00000568357 LRRC40Q9H9A6 602 aa14.83□□□□□ -0.04
VPS39-210ENST00000568357 POLR1BQ9H9Y6 1135 aa14.83□□□□□ -0.04
VPS39-210ENST00000568357 ETNK1Q9HBU6 452 aa14.83□□□□□ -0.04
VPS39-210ENST00000568357 PRDM8Q9NQV8 689 aa14.83□□□□□ -0.04
VPS39-210ENST00000568357 KLC4Q9NSK0 619 aa14.83□□□□□ -0.04
VPS39-210ENST00000568357 PIH1D1Q9NWS0 290 aaKnown RBP14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms