RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 FZD10Q9ULW2 581 aa11.58□□□□□ -0.56
CLK3-222ENST00000568232 SIK3Q9Y2K2 1263 aa11.58□□□□□ -0.56
CLK3-222ENST00000568232 ZDHHC9Q9Y397 364 aa11.58□□□□□ -0.56
CLK3-222ENST00000568232 CCDC168Q8NDH2 2452 aa11.58□□□□□ -0.56
CLK3-222ENST00000568232 IGHV5-51A0A0C4DH38 117 aa11.57□□□□□ -0.56
CLK3-222ENST00000568232 BICDL2A1A5D9 508 aa11.57□□□□□ -0.56
CLK3-222ENST00000568232 ARHGAP42A6NI28 874 aa11.57□□□□□ -0.56
CLK3-222ENST00000568232 DFFAO00273 331 aa11.57□□□□□ -0.56
CLK3-222ENST00000568232 LSM8O95777 96 aaKnown RBP11.57□□□□□ -0.56
CLK3-222ENST00000568232 VIPP01282 170 aa11.57□□□□□ -0.56
CLK3-222ENST00000568232 EBLN1P0CF75 366 aa11.57□□□□□ -0.56
CLK3-222ENST00000568232 SLC2A4P14672 509 aa11.57□□□□□ -0.56
CLK3-222ENST00000568232 XRCC1P18887 633 aaPredicted RBP11.57□□□□□ -0.56
CLK3-222ENST00000568232 RFC1P35251 1148 aaPredicted RBP11.57□□□□□ -0.56
CLK3-222ENST00000568232 SLC19A1P41440 591 aa11.57□□□□□ -0.56
CLK3-222ENST00000568232 VAV2P52735 878 aa11.57□□□□□ -0.56
CLK3-222ENST00000568232 PTSQ03393 145 aa11.57□□□□□ -0.56
CLK3-222ENST00000568232 SLC10A7Q0GE19 358 aa11.57□□□□□ -0.56
CLK3-222ENST00000568232 TRAF2Q12933 501 aa11.57□□□□□ -0.56
CLK3-222ENST00000568232 ATP1A4Q13733 1029 aa11.57□□□□□ -0.56
CLK3-222ENST00000568232 MIIPQ5JXC2 388 aa11.57□□□□□ -0.56
CLK3-222ENST00000568232 IZUMO3Q5VZ72 239 aa11.57□□□□□ -0.56
CLK3-222ENST00000568232 LRRC66Q68CR7 880 aa11.57□□□□□ -0.56
CLK3-222ENST00000568232 MED25Q71SY5 747 aa11.57□□□□□ -0.56
CLK3-222ENST00000568232 CUZD1Q86UP6 607 aa11.57□□□□□ -0.56
CLK3-222ENST00000568232 KCNMB4Q86W47 210 aa11.57□□□□□ -0.56
CLK3-222ENST00000568232 ARHGAP12Q8IWW6 846 aa11.57□□□□□ -0.56
CLK3-222ENST00000568232 SIDT2Q8NBJ9 832 aaKnown RBP11.57□□□□□ -0.56
CLK3-222ENST00000568232 EXD1Q8NHP7 514 aa11.57□□□□□ -0.56
CLK3-222ENST00000568232 SLC30A5Q8TAD4 765 aa11.57□□□□□ -0.56
CLK3-222ENST00000568232 SCRN2Q96FV2 425 aa11.57□□□□□ -0.56
CLK3-222ENST00000568232 PSKH2Q96QS6 385 aa11.57□□□□□ -0.56
CLK3-222ENST00000568232 MLPHQ9BV36 600 aaPredicted RBP11.57□□□□□ -0.56
CLK3-222ENST00000568232 UCK1Q9HA47 277 aa11.57□□□□□ -0.56
CLK3-222ENST00000568232 SP110Q9HB58 689 aa11.57□□□□□ -0.56
CLK3-222ENST00000568232 ZBTB20Q9HC78 741 aaPredicted RBP11.57□□□□□ -0.56
CLK3-222ENST00000568232 C5AR2Q9P296 337 aa11.57□□□□□ -0.56
CLK3-222ENST00000568232 ZNF624Q9P2J8 865 aaPredicted RBP11.57□□□□□ -0.56
CLK3-222ENST00000568232 CNOT6Q9ULM6 557 aaKnown RBP11.57□□□□□ -0.56
CLK3-222ENST00000568232 SNX7Q9UNH6 387 aa11.57□□□□□ -0.56
CLK3-222ENST00000568232 MED13LQ71F56 2210 aa11.57□□□□□ -0.56
CLK3-222ENST00000568232 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.56□□□□□ -0.56
CLK3-222ENST00000568232 OR5K4A6NMS3 321 aa11.56□□□□□ -0.56
CLK3-222ENST00000568232 FGF10O15520 208 aaPredicted RBP11.56□□□□□ -0.56
CLK3-222ENST00000568232 HSP90AA1P07900 732 aaKnown RBP11.56□□□□□ -0.56
CLK3-222ENST00000568232 CAPZBP47756 277 aa11.56□□□□□ -0.56
CLK3-222ENST00000568232 TPI1P60174 286 aa11.56□□□□□ -0.56
CLK3-222ENST00000568232 PDE1BQ01064 536 aa11.56□□□□□ -0.56
CLK3-222ENST00000568232 LBRQ14739 615 aaKnown RBP11.56□□□□□ -0.56
CLK3-222ENST00000568232 LLGL1Q15334 1064 aa11.56□□□□□ -0.56
CLK3-222ENST00000568232 VWA5B1Q5TIE3 1220 aa11.56□□□□□ -0.56
CLK3-222ENST00000568232 PRAMEF17Q5VTA0 474 aa11.56□□□□□ -0.56
CLK3-222ENST00000568232 LYPLAL1Q5VWZ2 237 aa11.56□□□□□ -0.56
CLK3-222ENST00000568232 DPY19L2P1Q6NXN4 242 aa11.56□□□□□ -0.56
CLK3-222ENST00000568232 WDR59Q6PJI9 974 aa11.56□□□□□ -0.56
CLK3-222ENST00000568232 PGBD5Q8N414 524 aa11.56□□□□□ -0.56
CLK3-222ENST00000568232 TMEM102Q8N9M5 508 aaPredicted RBP11.56□□□□□ -0.56
CLK3-222ENST00000568232 FCRL4Q96PJ5 515 aa11.56□□□□□ -0.56
CLK3-222ENST00000568232 MCCC1Q96RQ3 725 aaPredicted RBP11.56□□□□□ -0.56
CLK3-222ENST00000568232 C11orf70Q9BRQ4 267 aa11.56□□□□□ -0.56
CLK3-222ENST00000568232 OSGEPL1Q9H4B0 414 aa11.56□□□□□ -0.56
CLK3-222ENST00000568232 NOD2Q9HC29 1040 aa11.56□□□□□ -0.56
CLK3-222ENST00000568232 ARFGAP3Q9NP61 516 aa11.56□□□□□ -0.56
CLK3-222ENST00000568232 WASH6PQ9NQA3 447 aa11.56□□□□□ -0.56
CLK3-222ENST00000568232 KLC4Q9NSK0 619 aa11.56□□□□□ -0.56
CLK3-222ENST00000568232 GPATCH2LQ9NWQ4 482 aa11.56□□□□□ -0.56
CLK3-222ENST00000568232 VPS18Q9P253 973 aa11.56□□□□□ -0.56
CLK3-222ENST00000568232 TCFL5Q9UL49 500 aa11.56□□□□□ -0.56
CLK3-222ENST00000568232 MASP2O00187 686 aa11.55□□□□□ -0.56
CLK3-222ENST00000568232 E2F3O00716 465 aa11.55□□□□□ -0.56
CLK3-222ENST00000568232 CCP110O43303 1012 aa11.55□□□□□ -0.56
CLK3-222ENST00000568232 CPNE3O75131 537 aaKnown RBP11.55□□□□□ -0.56
CLK3-222ENST00000568232 SOCS5O75159 536 aa11.55□□□□□ -0.56
CLK3-222ENST00000568232 SCRG1O75711 98 aa11.55□□□□□ -0.56
CLK3-222ENST00000568232 PGLSO95336 258 aa11.55□□□□□ -0.56
CLK3-222ENST00000568232 PDHA1P08559 390 aa11.55□□□□□ -0.56
CLK3-222ENST00000568232 KRT3P12035 628 aa11.55□□□□□ -0.56
CLK3-222ENST00000568232 GPD1P21695 349 aa11.55□□□□□ -0.56
CLK3-222ENST00000568232 MMP8P22894 467 aa11.55□□□□□ -0.56
CLK3-222ENST00000568232 PPP1R2P41236 205 aa11.55□□□□□ -0.56
CLK3-222ENST00000568232 KRTAP10-9P60411 292 aa11.55□□□□□ -0.56
CLK3-222ENST00000568232 MAXP61244 160 aa11.55□□□□□ -0.56
CLK3-222ENST00000568232 IL10RBQ08334 325 aa11.55□□□□□ -0.56
CLK3-222ENST00000568232 RFTN1Q14699 578 aaPredicted RBP11.55□□□□□ -0.56
CLK3-222ENST00000568232 SEPT7Q16181 437 aaKnown RBP11.55□□□□□ -0.56
CLK3-222ENST00000568232 ZNF648Q5T619 568 aaPredicted RBP11.55□□□□□ -0.56
CLK3-222ENST00000568232 SPNS3Q6ZMD2 512 aa11.55□□□□□ -0.56
CLK3-222ENST00000568232 PHYKPLQ8IUZ5 450 aa11.55□□□□□ -0.56
CLK3-222ENST00000568232 TRIM48Q8IWZ4 208 aa11.55□□□□□ -0.56
CLK3-222ENST00000568232 NPWQ8N729 165 aa11.55□□□□□ -0.56
CLK3-222ENST00000568232 SLC20A1Q8WUM9 679 aa11.55□□□□□ -0.56
CLK3-222ENST00000568232 PIH1D2Q8WWB5 315 aa11.55□□□□□ -0.56
CLK3-222ENST00000568232 ZDHHC12Q96GR4 267 aa11.55□□□□□ -0.56
CLK3-222ENST00000568232 SGSM3Q96HU1 749 aa11.55□□□□□ -0.56
CLK3-222ENST00000568232 SLC41A2Q96JW4 573 aa11.55□□□□□ -0.56
CLK3-222ENST00000568232 AGPAT4Q9NRZ5 378 aa11.55□□□□□ -0.56
CLK3-222ENST00000568232 FGF21Q9NSA1 209 aa11.55□□□□□ -0.56
CLK3-222ENST00000568232 SLC23A2Q9UGH3 650 aa11.55□□□□□ -0.56
CLK3-222ENST00000568232 CSAG2Q9Y5P2 127 aa11.55□□□□□ -0.56
CLK3-222ENST00000568232 FHOD1Q9Y613 1164 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms