RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 TREX1Q9NSU2 369 aa19.33■□□□□ 0.69
CLN3-225ENST00000566824 SMOXQ9NWM0 555 aa19.33■□□□□ 0.69
CLN3-225ENST00000566824 ZNHIT2Q9UHR6 403 aa19.33■□□□□ 0.69
CLN3-225ENST00000566824 APPL1Q9UKG1 709 aa19.33■□□□□ 0.69
CLN3-225ENST00000566824 CSNK1G3Q9Y6M4 447 aa19.33■□□□□ 0.69
CLN3-225ENST00000566824 U3KQA8 63 aa19.33■□□□□ 0.69
CLN3-225ENST00000566824 PIKFYVEQ9Y2I7 2098 aa19.32■□□□□ 0.68
CLN3-225ENST00000566824 TRBV5-4A0A0C4DH59 114 aa19.32■□□□□ 0.68
CLN3-225ENST00000566824 EFCAB8A8MWE9 144 aa19.32■□□□□ 0.68
CLN3-225ENST00000566824 LMO7DNF2Z398 122 aa19.32■□□□□ 0.68
CLN3-225ENST00000566824 GOT2P00505 430 aaKnown RBP19.32■□□□□ 0.68
CLN3-225ENST00000566824 SDHBP21912 280 aa19.32■□□□□ 0.68
CLN3-225ENST00000566824 KCNA4P22459 653 aa19.32■□□□□ 0.68
CLN3-225ENST00000566824 FOXN2P32314 431 aa19.32■□□□□ 0.68
CLN3-225ENST00000566824 NOVA1P51513 510 aaKnown RBP19.32■□□□□ 0.68
CLN3-225ENST00000566824 CTSCP53634 463 aa19.32■□□□□ 0.68
CLN3-225ENST00000566824 ITGA8P53708 1063 aa19.32■□□□□ 0.68
CLN3-225ENST00000566824 CKAP4Q07065 602 aaKnown RBP19.32■□□□□ 0.68
CLN3-225ENST00000566824 TMEM115Q12893 351 aaPredicted RBP19.32■□□□□ 0.68
CLN3-225ENST00000566824 DNAJC3Q13217 504 aa19.32■□□□□ 0.68
CLN3-225ENST00000566824 ITGA9Q13797 1035 aa19.32■□□□□ 0.68
CLN3-225ENST00000566824 PUM1Q14671 1186 aaKnown RBP eCLIP19.32■□□□□ 0.68
CLN3-225ENST00000566824 TRADDQ15628 312 aa19.32■□□□□ 0.68
CLN3-225ENST00000566824 PROX2Q3B8N5 592 aa19.32■□□□□ 0.68
CLN3-225ENST00000566824 ZRANB3Q5FWF4 1079 aa19.32■□□□□ 0.68
CLN3-225ENST00000566824 HIBCHQ6NVY1 386 aaPredicted RBP19.32■□□□□ 0.68
CLN3-225ENST00000566824 CRTC3Q6UUV7 619 aa19.32■□□□□ 0.68
CLN3-225ENST00000566824 SNX20Q7Z614 316 aa19.32■□□□□ 0.68
CLN3-225ENST00000566824 GPBAR1Q8TDU6 330 aa19.32■□□□□ 0.68
CLN3-225ENST00000566824 MFSD3Q96ES6 412 aa19.32■□□□□ 0.68
CLN3-225ENST00000566824 SIGLEC10Q96LC7 697 aa19.32■□□□□ 0.68
CLN3-225ENST00000566824 OR2M4Q96R27 311 aa19.32■□□□□ 0.68
CLN3-225ENST00000566824 KIFC1Q9BW19 673 aa19.32■□□□□ 0.68
CLN3-225ENST00000566824 DPH5Q9H2P9 285 aa19.32■□□□□ 0.68
CLN3-225ENST00000566824 XAB2Q9HCS7 855 aaKnown RBP19.32■□□□□ 0.68
CLN3-225ENST00000566824 SPATS2LQ9NUQ6 558 aaKnown RBP19.32■□□□□ 0.68
CLN3-225ENST00000566824 NLGN3Q9NZ94 848 aa19.32■□□□□ 0.68
CLN3-225ENST00000566824 SLC23A2Q9UGH3 650 aa19.32■□□□□ 0.68
CLN3-225ENST00000566824 RIMKLBQ9ULI2 386 aa19.32■□□□□ 0.68
CLN3-225ENST00000566824 ASXL3Q9C0F0 2248 aa19.32■□□□□ 0.68
CLN3-225ENST00000566824 CACNA1AO00555 2505 aa19.31■□□□□ 0.68
CLN3-225ENST00000566824 FAM187AA6NFU0 413 aa19.31■□□□□ 0.68
CLN3-225ENST00000566824 CHUKO15111 745 aa19.31■□□□□ 0.68
CLN3-225ENST00000566824 GRID2O43424 1007 aa19.31■□□□□ 0.68
CLN3-225ENST00000566824 SEC31AO94979 1220 aaKnown RBP19.31■□□□□ 0.68
CLN3-225ENST00000566824 MLNP12872 115 aa19.31■□□□□ 0.68
CLN3-225ENST00000566824 ARNTP27540 789 aa19.31■□□□□ 0.68
CLN3-225ENST00000566824 SARNPP82979 210 aaKnown RBP19.31■□□□□ 0.68
CLN3-225ENST00000566824 SEMA3AQ14563 771 aa19.31■□□□□ 0.68
CLN3-225ENST00000566824 ELOCQ15369 112 aa19.31■□□□□ 0.68
CLN3-225ENST00000566824 TRIP6Q15654 476 aaKnown RBP19.31■□□□□ 0.68
CLN3-225ENST00000566824 PLA2G4EQ3MJ16 856 aa19.31■□□□□ 0.68
CLN3-225ENST00000566824 TAF8Q7Z7C8 310 aa19.31■□□□□ 0.68
CLN3-225ENST00000566824 GALNT13Q8IUC8 556 aa19.31■□□□□ 0.68
CLN3-225ENST00000566824 NXPE1Q8N323 547 aa19.31■□□□□ 0.68
CLN3-225ENST00000566824 FSTL5Q8N475 847 aaPredicted RBP19.31■□□□□ 0.68
CLN3-225ENST00000566824 NOA1Q8NC60 698 aaKnown RBP19.31■□□□□ 0.68
CLN3-225ENST00000566824 CNDP2Q96KP4 475 aaKnown RBP19.31■□□□□ 0.68
CLN3-225ENST00000566824 FCRL3Q96P31 734 aaPredicted RBP19.31■□□□□ 0.68
CLN3-225ENST00000566824 ERP44Q9BS26 406 aa19.31■□□□□ 0.68
CLN3-225ENST00000566824 BOCQ9BWV1 1114 aa19.31■□□□□ 0.68
CLN3-225ENST00000566824 TRNAU1APQ9NX07 287 aaKnown RBP19.31■□□□□ 0.68
CLN3-225ENST00000566824 MARCH4Q9P2E8 410 aaPredicted RBP19.31■□□□□ 0.68
CLN3-225ENST00000566824 CRLS1Q9UJA2 301 aa19.31■□□□□ 0.68
CLN3-225ENST00000566824 SOX13Q9UN79 622 aa19.31■□□□□ 0.68
CLN3-225ENST00000566824 SLC30A1Q9Y6M5 507 aa19.31■□□□□ 0.68
CLN3-225ENST00000566824 SGTAO43765 313 aa19.3■□□□□ 0.68
CLN3-225ENST00000566824 CDK14O94921 469 aa19.3■□□□□ 0.68
CLN3-225ENST00000566824 LDOC1O95751 146 aaPredicted RBP19.3■□□□□ 0.68
CLN3-225ENST00000566824 EML2O95834 649 aa19.3■□□□□ 0.68
CLN3-225ENST00000566824 ANXA6P08133 673 aa19.3■□□□□ 0.68
CLN3-225ENST00000566824 ACP5P13686 325 aa19.3■□□□□ 0.68
CLN3-225ENST00000566824 ITGALP20701 1170 aa19.3■□□□□ 0.68
CLN3-225ENST00000566824 DBN1Q16643 649 aa19.3■□□□□ 0.68
CLN3-225ENST00000566824 LDLRAP1Q5SW96 308 aa19.3■□□□□ 0.68
CLN3-225ENST00000566824 DUPD1Q68J44 220 aa19.3■□□□□ 0.68
CLN3-225ENST00000566824 SLC30A9Q6PML9 568 aa19.3■□□□□ 0.68
CLN3-225ENST00000566824 DET1Q7L5Y6 550 aa19.3■□□□□ 0.68
CLN3-225ENST00000566824 CHST15Q7LFX5 561 aaPredicted RBP19.3■□□□□ 0.68
CLN3-225ENST00000566824 TAS2R42Q7RTR8 314 aa19.3■□□□□ 0.68
CLN3-225ENST00000566824 C11orf96Q7Z7L8 435 aa19.3■□□□□ 0.68
CLN3-225ENST00000566824 HOOK3Q86VS8 718 aa19.3■□□□□ 0.68
CLN3-225ENST00000566824 SERPINA9Q86WD7 417 aa19.3■□□□□ 0.68
CLN3-225ENST00000566824 IGDCC3Q8IVU1 814 aa19.3■□□□□ 0.68
CLN3-225ENST00000566824 SNF8Q96H20 258 aa19.3■□□□□ 0.68
CLN3-225ENST00000566824 APOLD1Q96LR9 279 aa19.3■□□□□ 0.68
CLN3-225ENST00000566824 WDR83Q9BRX9 315 aaKnown RBP19.3■□□□□ 0.68
CLN3-225ENST00000566824 LRRC1Q9BTT6 524 aa19.3■□□□□ 0.68
CLN3-225ENST00000566824 TOR4AQ9NXH8 423 aa19.3■□□□□ 0.68
CLN3-225ENST00000566824 GRHL1Q9NZI5 618 aa19.3■□□□□ 0.68
CLN3-225ENST00000566824 SIRPGQ9P1W8 387 aa19.3■□□□□ 0.68
CLN3-225ENST00000566824 FTSJ1Q9UET6 329 aa19.3■□□□□ 0.68
CLN3-225ENST00000566824 KCNK6Q9Y257 313 aa19.3■□□□□ 0.68
CLN3-225ENST00000566824 NEMP2A6NFY4 417 aa19.29■□□□□ 0.68
CLN3-225ENST00000566824 SDR42E2A6NKP2 422 aa19.29■□□□□ 0.68
CLN3-225ENST00000566824 AP3B1O00203 1094 aa19.29■□□□□ 0.68
CLN3-225ENST00000566824 VEGFDO43915 354 aa19.29■□□□□ 0.68
CLN3-225ENST00000566824 CEACAM1P13688 526 aa19.29■□□□□ 0.68
CLN3-225ENST00000566824 SLC7A5Q01650 507 aa19.29■□□□□ 0.68
CLN3-225ENST00000566824 CACNG1Q06432 222 aa19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms