RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 TCAF2A6NFQ2 919 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 NCF1BA6NI72 391 aaPredicted RBP5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 TBKBP1A7MCY6 615 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 NCF1CA8MVU1 366 aaPredicted RBP5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 NRP1O14786 923 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 TO15178 435 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 NKX2-8O15522 239 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 RAD17O75943 681 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 IL1AP01583 271 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 ATF2P15336 505 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 IL7RP16871 459 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 MX1P20591 662 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 EDN2P20800 178 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 MYF6P23409 242 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 DNASE1P24855 282 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 DNAJB1P25685 340 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 SERPINB6P35237 376 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 SOAT1P35610 550 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 PTPN9P43378 593 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 KIR2DL1P43626 348 aaPredicted RBP5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 KIR2DL2P43627 348 aaPredicted RBP5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 PXNP49023 591 aaPredicted RBP5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 GNAQP50148 359 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 CLCN3P51790 818 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 RAP2BP61225 183 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 TIMM10P62072 90 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 TFAP4Q01664 338 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 CXCL9Q07325 125 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 MTAPQ13126 283 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 BYSLQ13895 437 aaKnown RBP5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 WDR72Q3MJ13 1102 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 MDH1BQ5I0G3 518 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 ZNF648Q5T619 568 aaPredicted RBP5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 RIPPLY2Q5TAB7 128 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 PMS2CLQ68D20 193 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 OR6B2Q6IFH4 312 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 OGFOD2Q6N063 350 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 NEK5Q6P3R8 708 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 MTSS1LQ765P7 747 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 CENPVQ7Z7K6 275 aaPredicted RBP5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 CUZD1Q86UP6 607 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 TMEFF1Q8IYR6 380 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 GUF1Q8N442 669 aaKnown RBP5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 OCC1Q8TAD7 63 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 TMEM186Q96B77 213 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 PABPC5Q96DU9 382 aaKnown RBP5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 RRNAD1Q96FB5 475 aaKnown RBP5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 KIRREL1Q96J84 757 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 ZNF560Q96MR9 790 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 BCL7BQ9BQE9 202 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 KATNB1Q9BVA0 655 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 HDHD5Q9BXW7 423 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 XRN2Q9H0D6 950 aaKnown RBP eCLIP5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 EHD1Q9H4M9 534 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 KCNK9Q9NPC2 374 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 RPRD1BQ9NQG5 326 aaKnown RBP5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 PRMT8Q9NR22 394 aaPredicted RBP5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 ETAA1Q9NY74 926 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 SLAMF8Q9P0V8 285 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 DLGAP2Q9P1A6 1054 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 HEY2Q9UBP5 337 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 HAO1Q9UJM8 370 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 RIMKLBQ9ULI2 386 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 SORCS3Q9UPU3 1222 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 EXOC6BQ9Y2D4 811 aa5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 NOSIPQ9Y314 301 aaKnown RBP5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 SEC23IPQ9Y6Y8 1000 aaKnown RBP5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 V9GYY5 206 aaPredicted RBP5.21□□□□□ -1.58
VPS35P1-201ENST00000563400 AFDNP55196 1824 aaKnown RBP5.2□□□□□ -1.58
VPS35P1-201ENST00000563400 COL24A1Q17RW2 1714 aa5.2□□□□□ -1.58
VPS35P1-201ENST00000563400 A0A0G2JNJ9 132 aa5.2□□□□□ -1.58
VPS35P1-201ENST00000563400 NOTOA8MTQ0 251 aa5.2□□□□□ -1.58
VPS35P1-201ENST00000563400 L7N2F9 121 aa5.2□□□□□ -1.58
VPS35P1-201ENST00000563400 FOXD2O60548 495 aaPredicted RBP5.2□□□□□ -1.58
VPS35P1-201ENST00000563400 E2F6O75461 281 aa5.2□□□□□ -1.58
VPS35P1-201ENST00000563400 IDH1O75874 414 aaKnown RBP5.2□□□□□ -1.58
VPS35P1-201ENST00000563400 FARP2O94887 1054 aaPredicted RBP5.2□□□□□ -1.58
VPS35P1-201ENST00000563400 PLGP00747 810 aaPredicted RBP5.2□□□□□ -1.58
VPS35P1-201ENST00000563400 CYBBP04839 570 aa5.2□□□□□ -1.58
VPS35P1-201ENST00000563400 POLR2MP0CAP2 368 aa5.2□□□□□ -1.58
VPS35P1-201ENST00000563400 SLC6A2P23975 617 aa5.2□□□□□ -1.58
VPS35P1-201ENST00000563400 PSMA5P28066 241 aa5.2□□□□□ -1.58
VPS35P1-201ENST00000563400 ADORA2AP29274 412 aa5.2□□□□□ -1.58
VPS35P1-201ENST00000563400 HOXA13P31271 388 aaPredicted RBP5.2□□□□□ -1.58
VPS35P1-201ENST00000563400 KIR2DL3P43628 341 aa5.2□□□□□ -1.58
VPS35P1-201ENST00000563400 GABRB2P47870 512 aa5.2□□□□□ -1.58
VPS35P1-201ENST00000563400 RFX5P48382 616 aaPredicted RBP5.2□□□□□ -1.58
VPS35P1-201ENST00000563400 TAS2R50P59544 299 aa5.2□□□□□ -1.58
VPS35P1-201ENST00000563400 OVGP1Q12889 678 aa5.2□□□□□ -1.58
VPS35P1-201ENST00000563400 SEMA3BQ13214 749 aa5.2□□□□□ -1.58
VPS35P1-201ENST00000563400 IL13RA2Q14627 380 aa5.2□□□□□ -1.58
VPS35P1-201ENST00000563400 RRP1BQ14684 758 aaKnown RBP5.2□□□□□ -1.58
VPS35P1-201ENST00000563400 SNAPC1Q16533 368 aa5.2□□□□□ -1.58
VPS35P1-201ENST00000563400 ZXDCQ2QGD7 858 aaPredicted RBP5.2□□□□□ -1.58
VPS35P1-201ENST00000563400 COL28A1Q2UY09 1125 aa5.2□□□□□ -1.58
VPS35P1-201ENST00000563400 EPHA10Q5JZY3 1008 aa5.2□□□□□ -1.58
VPS35P1-201ENST00000563400 C6orf136Q5SQH8 315 aa5.2□□□□□ -1.58
VPS35P1-201ENST00000563400 DAB2IPQ5VWQ8 1189 aa5.2□□□□□ -1.58
VPS35P1-201ENST00000563400 FAM90A2PQ658T7 463 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms