RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 GDAP1Q8TB36 358 aa21.45■■□□□ 1.02
SNX1-206ENST00000559389 FCRL3Q96P31 734 aaPredicted RBP21.45■■□□□ 1.02
SNX1-206ENST00000559389 LRRC61Q9BV99 259 aa21.45■■□□□ 1.02
SNX1-206ENST00000559389 SLC13A1Q9BZW2 595 aa21.45■■□□□ 1.02
SNX1-206ENST00000559389 ZCCHC2Q9C0B9 1178 aaKnown RBP21.45■■□□□ 1.02
SNX1-206ENST00000559389 CYP4F12Q9HCS2 524 aa21.45■■□□□ 1.02
SNX1-206ENST00000559389 TM7SF3Q9NS93 570 aa21.45■■□□□ 1.02
SNX1-206ENST00000559389 SUFUQ9UMX1 484 aa21.45■■□□□ 1.02
SNX1-206ENST00000559389 CHMP2BQ9UQN3 213 aa21.45■■□□□ 1.02
SNX1-206ENST00000559389 PCDHGB2Q9Y5G2 931 aa21.45■■□□□ 1.02
SNX1-206ENST00000559389 IGLV3-16A0A075B6K0 115 aa21.44■■□□□ 1.02
SNX1-206ENST00000559389 EIF3HO15372 352 aaKnown RBP eCLIP21.44■■□□□ 1.02
SNX1-206ENST00000559389 NUAK1O60285 661 aa21.44■■□□□ 1.02
SNX1-206ENST00000559389 PCDHGA12O60330 932 aa21.44■■□□□ 1.02
SNX1-206ENST00000559389 SDC3O75056 442 aa21.44■■□□□ 1.02
SNX1-206ENST00000559389 VAPBO95292 243 aa21.44■■□□□ 1.02
SNX1-206ENST00000559389 TNFP01375 233 aa21.44■■□□□ 1.02
SNX1-206ENST00000559389 ZNF8P17098 575 aaPredicted RBP21.44■■□□□ 1.02
SNX1-206ENST00000559389 ACRV1P26436 265 aa21.44■■□□□ 1.02
SNX1-206ENST00000559389 ARCN1P48444 511 aaKnown RBP21.44■■□□□ 1.02
SNX1-206ENST00000559389 LIMK1P53667 647 aa21.44■■□□□ 1.02
SNX1-206ENST00000559389 CRYMQ14894 314 aa21.44■■□□□ 1.02
SNX1-206ENST00000559389 FASTKD3Q14CZ7 662 aaKnown RBP21.44■■□□□ 1.02
SNX1-206ENST00000559389 MARK2Q7KZI7 788 aaKnown RBP21.44■■□□□ 1.02
SNX1-206ENST00000559389 CCNJLQ8IV13 435 aa21.44■■□□□ 1.02
SNX1-206ENST00000559389 ZNF548Q8NEK5 533 aaPredicted RBP21.44■■□□□ 1.02
SNX1-206ENST00000559389 OR4L1Q8NH43 312 aa21.44■■□□□ 1.02
SNX1-206ENST00000559389 TBRG4Q969Z0 631 aaKnown RBP eCLIP21.44■■□□□ 1.02
SNX1-206ENST00000559389 OR2M4Q96R27 311 aa21.44■■□□□ 1.02
SNX1-206ENST00000559389 FOXP3Q9BZS1 431 aa21.44■■□□□ 1.02
SNX1-206ENST00000559389 OR2AG1Q9H205 316 aa21.44■■□□□ 1.02
SNX1-206ENST00000559389 RMI1Q9H9A7 625 aa21.44■■□□□ 1.02
SNX1-206ENST00000559389 CARS2Q9HA77 564 aaKnown RBP21.44■■□□□ 1.02
SNX1-206ENST00000559389 PLAC1Q9HBJ0 212 aa21.44■■□□□ 1.02
SNX1-206ENST00000559389 CATSPERZQ9NTU4 200 aa21.44■■□□□ 1.02
SNX1-206ENST00000559389 MOSPD1Q9UJG1 213 aa21.44■■□□□ 1.02
SNX1-206ENST00000559389 PCYT1BQ9Y5K3 369 aaPredicted RBP21.44■■□□□ 1.02
SNX1-206ENST00000559389 LOC105378220A0A1B0GUY1 285 aaPredicted RBP21.43■■□□□ 1.02
SNX1-206ENST00000559389 TTC4O95801 387 aa21.43■■□□□ 1.02
SNX1-206ENST00000559389 POLBP06746 335 aa21.43■■□□□ 1.02
SNX1-206ENST00000559389 RHOXF2BP0C7M4 288 aa21.43■■□□□ 1.02
SNX1-206ENST00000559389 AKT1P31749 480 aa21.43■■□□□ 1.02
SNX1-206ENST00000559389 GNPDA1P46926 289 aa21.43■■□□□ 1.02
SNX1-206ENST00000559389 SEMA3AQ14563 771 aa21.43■■□□□ 1.02
SNX1-206ENST00000559389 DBN1Q16643 649 aa21.43■■□□□ 1.02
SNX1-206ENST00000559389 PYCR3Q53H96 274 aa21.43■■□□□ 1.02
SNX1-206ENST00000559389 HP1BP3Q5SSJ5 553 aaPredicted RBP21.43■■□□□ 1.02
SNX1-206ENST00000559389 TEX35Q5T0J7 233 aa21.43■■□□□ 1.02
SNX1-206ENST00000559389 STPG1Q5TH74 334 aa21.43■■□□□ 1.02
SNX1-206ENST00000559389 RD3Q7Z3Z2 195 aa21.43■■□□□ 1.02
SNX1-206ENST00000559389 SERPINA9Q86WD7 417 aa21.43■■□□□ 1.02
SNX1-206ENST00000559389 SERBP1Q8NC51 408 aaKnown RBP eCLIP21.43■■□□□ 1.02
SNX1-206ENST00000559389 SAP25Q8TEE9 199 aa21.43■■□□□ 1.02
SNX1-206ENST00000559389 CCDC97Q96F63 343 aaPredicted RBP21.43■■□□□ 1.02
SNX1-206ENST00000559389 COPS8Q99627 209 aa21.43■■□□□ 1.02
SNX1-206ENST00000559389 RHOXF2Q9BQY4 288 aa21.43■■□□□ 1.02
SNX1-206ENST00000559389 ZDHHC3Q9NYG2 299 aa21.43■■□□□ 1.02
SNX1-206ENST00000559389 MARCH4Q9P2E8 410 aaPredicted RBP21.43■■□□□ 1.02
SNX1-206ENST00000559389 FAM169AQ9Y6X4 670 aa21.43■■□□□ 1.02
SNX1-206ENST00000559389 C4orf47A7E2U8 309 aa21.42■■□□□ 1.02
SNX1-206ENST00000559389 CHUKO15111 745 aa21.42■■□□□ 1.02
SNX1-206ENST00000559389 SCAMP1O15126 338 aa21.42■■□□□ 1.02
SNX1-206ENST00000559389 DGKAP23743 735 aa21.42■■□□□ 1.02
SNX1-206ENST00000559389 B4GALNT1Q00973 533 aa21.42■■□□□ 1.02
SNX1-206ENST00000559389 TMEM115Q12893 351 aaPredicted RBP21.42■■□□□ 1.02
SNX1-206ENST00000559389 BNIP3Q12983 259 aa21.42■■□□□ 1.02
SNX1-206ENST00000559389 SLC14A1Q13336 389 aa21.42■■□□□ 1.02
SNX1-206ENST00000559389 GTF2H3Q13889 308 aa21.42■■□□□ 1.02
SNX1-206ENST00000559389 ITIH4Q14624 930 aa21.42■■□□□ 1.02
SNX1-206ENST00000559389 FASTKD1Q53R41 847 aaKnown RBP21.42■■□□□ 1.02
SNX1-206ENST00000559389 PRRT3Q5FWE3 981 aa21.42■■□□□ 1.02
SNX1-206ENST00000559389 AARS2Q5JTZ9 985 aaKnown RBP21.42■■□□□ 1.02
SNX1-206ENST00000559389 SPANXN3Q5MJ09 141 aa21.42■■□□□ 1.02
SNX1-206ENST00000559389 STEAP4Q687X5 459 aa21.42■■□□□ 1.02
SNX1-206ENST00000559389 CERS6Q6ZMG9 384 aa21.42■■□□□ 1.02
SNX1-206ENST00000559389 TAS2R42Q7RTR8 314 aa21.42■■□□□ 1.02
SNX1-206ENST00000559389 ALYREFQ86V81 257 aaKnown RBP21.42■■□□□ 1.02
SNX1-206ENST00000559389 GATAD2AQ86YP4 633 aa21.42■■□□□ 1.02
SNX1-206ENST00000559389 GALNT13Q8IUC8 556 aa21.42■■□□□ 1.02
SNX1-206ENST00000559389 RASGEF1AQ8N9B8 481 aa21.42■■□□□ 1.02
SNX1-206ENST00000559389 FBXO36Q8NEA4 188 aa21.42■■□□□ 1.02
SNX1-206ENST00000559389 NETO1Q8TDF5 533 aa21.42■■□□□ 1.02
SNX1-206ENST00000559389 HEXDCQ8WVB3 486 aa21.42■■□□□ 1.02
SNX1-206ENST00000559389 UCKL1Q9NWZ5 548 aa21.42■■□□□ 1.02
SNX1-206ENST00000559389 TRNAU1APQ9NX07 287 aaKnown RBP21.42■■□□□ 1.02
SNX1-206ENST00000559389 SPASTQ9UBP0 616 aa21.42■■□□□ 1.02
SNX1-206ENST00000559389 ZC3H7BQ9UGR2 993 aaKnown RBP21.42■■□□□ 1.02
SNX1-206ENST00000559389 AQP9O43315 295 aa21.41■■□□□ 1.02
SNX1-206ENST00000559389 CDK14O94921 469 aa21.41■■□□□ 1.02
SNX1-206ENST00000559389 SLU7O95391 586 aaKnown RBP21.41■■□□□ 1.02
SNX1-206ENST00000559389 MSH3P20585 1137 aa21.41■■□□□ 1.02
SNX1-206ENST00000559389 ECHS1P30084 290 aa21.41■■□□□ 1.02
SNX1-206ENST00000559389 CUL1Q13616 776 aa21.41■■□□□ 1.02
SNX1-206ENST00000559389 SMAD1Q15797 465 aaKnown RBP21.41■■□□□ 1.02
SNX1-206ENST00000559389 LONRF1Q17RB8 773 aa21.41■■□□□ 1.02
SNX1-206ENST00000559389 LYPLAL1Q5VWZ2 237 aa21.41■■□□□ 1.02
SNX1-206ENST00000559389 CRTC3Q6UUV7 619 aa21.41■■□□□ 1.02
SNX1-206ENST00000559389 UNC5AQ6ZN44 842 aa21.41■■□□□ 1.02
SNX1-206ENST00000559389 ANKMY2Q8IV38 441 aa21.41■■□□□ 1.02
SNX1-206ENST00000559389 ZBED8Q8IZ13 594 aa21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms