RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 EPB41L1Q9H4G0 881 aa7.21□□□□□ -1.25
VPS13C-206ENST00000558338 TNFRSF12AQ9NP84 129 aa7.21□□□□□ -1.25
VPS13C-206ENST00000558338 NUDT4Q9NZJ9 180 aa7.21□□□□□ -1.25
VPS13C-206ENST00000558338 ABCD2Q9UBJ2 740 aa7.21□□□□□ -1.25
VPS13C-206ENST00000558338 CD300AQ9UGN4 299 aa7.21□□□□□ -1.25
VPS13C-206ENST00000558338 STOML2Q9UJZ1 356 aa7.21□□□□□ -1.25
VPS13C-206ENST00000558338 PACSIN3Q9UKS6 424 aa7.21□□□□□ -1.25
VPS13C-206ENST00000558338 PKP3Q9Y446 797 aa7.21□□□□□ -1.25
VPS13C-206ENST00000558338 SPO11Q9Y5K1 396 aa7.21□□□□□ -1.25
VPS13C-206ENST00000558338 AP4B1Q9Y6B7 739 aa7.21□□□□□ -1.25
VPS13C-206ENST00000558338 SLC4A7Q9Y6M7 1214 aa7.21□□□□□ -1.25
VPS13C-206ENST00000558338 ANKRD66B4E2M5 251 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 H3BMM5 538 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 CBX4O00257 560 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 BTN3A1O00481 513 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 ECI2O75521 394 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 GJB3O75712 270 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 TMCC1O94876 653 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 GJB5O95377 273 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 ESRRBO95718 433 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 ALDOCP09972 364 aaKnown RBP7.21□□□□□ -1.26
VPS13C-206ENST00000558338 PIRTP0C851 137 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 PABPC4LP0CB38 370 aaKnown RBP7.21□□□□□ -1.26
VPS13C-206ENST00000558338 HSD17B1P14061 328 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 CD53P19397 219 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 OR1D2P34982 312 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 PEX19P40855 299 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 MAPK8P45983 427 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 KCNC1P48547 511 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 GATMP50440 423 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 CDH13P55290 713 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 AP1S1P61966 158 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 RPS24P62847 133 aaKnown RBP7.21□□□□□ -1.26
VPS13C-206ENST00000558338 CACNG1Q06432 222 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 ADRM1Q16186 407 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 RNF220Q5VTB9 566 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 LYPLAL1Q5VWZ2 237 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 RNF219Q5W0B1 726 aaPredicted RBP7.21□□□□□ -1.26
VPS13C-206ENST00000558338 KIAA1841Q6NSI8 718 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 NCEH1Q6PIU2 408 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 SLC30A9Q6PML9 568 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 PAOXQ6QHF9 649 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 CYHR1Q6ZMK1 362 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 ADAMTSL2Q86TH1 951 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 DHFR2Q86XF0 187 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 GPSM1Q86YR5 675 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 PHYKPLQ8IUZ5 450 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 RNF148Q8N7C7 305 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 TMEM102Q8N9M5 508 aaPredicted RBP7.21□□□□□ -1.26
VPS13C-206ENST00000558338 ANKK1Q8NFD2 765 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 MDGA1Q8NFP4 955 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 OR2T34Q8NGX1 318 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 OR2T3Q8NH03 318 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 TRPC4APQ8TEL6 797 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 EME1Q96AY2 570 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 KLHL32Q96NJ5 620 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 ZNF382Q96SR6 550 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 GPR21Q99679 349 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 PKP2Q99959 881 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 OSBPL11Q9BXB4 747 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 KLF16Q9BXK1 252 aaPredicted RBP7.21□□□□□ -1.26
VPS13C-206ENST00000558338 MRPS26Q9BYN8 205 aaKnown RBP7.21□□□□□ -1.26
VPS13C-206ENST00000558338 ZNF696Q9H7X3 374 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 SDR39U1Q9NRG7 319 aaPredicted RBP7.21□□□□□ -1.26
VPS13C-206ENST00000558338 POLG2Q9UHN1 485 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 MAFFQ9ULX9 164 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 PADI4Q9UM07 663 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 FAM50BQ9Y247 325 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 TNPO3Q9Y5L0 923 aaKnown RBP7.21□□□□□ -1.26
VPS13C-206ENST00000558338 SLC30A1Q9Y6M5 507 aa7.21□□□□□ -1.26
VPS13C-206ENST00000558338 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP7.2□□□□□ -1.26
VPS13C-206ENST00000558338 KANSL1LA0AUZ9 987 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 NPEPPSL1A6NEC2 478 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 PRORSD1PA6NEY8 169 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 NT5C1B-RDH14C9J2C7 533 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 DNAJA2O60884 412 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 SIX3O95343 332 aaPredicted RBP7.2□□□□□ -1.26
VPS13C-206ENST00000558338 EFEMP2O95967 443 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 C1RP00736 705 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 NPPAP01160 153 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 CXCL10P02778 98 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 F11P03951 625 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 FBXO45P0C2W1 286 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 PRR35P0CG20 571 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 FCGR1AP12314 374 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 HGFP14210 728 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 CD1EP15812 388 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 HMGA1P17096 107 aaKnown RBP7.2□□□□□ -1.26
VPS13C-206ENST00000558338 TSPAN8P19075 237 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 TCN1P20061 433 aaPredicted RBP7.2□□□□□ -1.26
VPS13C-206ENST00000558338 RGRP47804 291 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 SLC7A2P52569 658 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 KCNK10P57789 538 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 ARF5P84085 180 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 ROR2Q01974 943 aaKnown RBP7.2□□□□□ -1.26
VPS13C-206ENST00000558338 KCNC4Q03721 635 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 PLD1Q13393 1074 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 PTPRCAPQ14761 206 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 TSNQ15631 228 aaKnown RBP7.2□□□□□ -1.26
VPS13C-206ENST00000558338 RBBP7Q16576 425 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms