RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 TXLNGYQ9BZA5 131 aa12.69□□□□□ -0.38
SHMT2-227ENST00000557269 OR2AG1Q9H205 316 aa12.69□□□□□ -0.38
SHMT2-227ENST00000557269 IL21RQ9HBE5 538 aa12.69□□□□□ -0.38
SHMT2-227ENST00000557269 LRRC4CQ9HCJ2 640 aa12.69□□□□□ -0.38
SHMT2-227ENST00000557269 TRIM39Q9HCM9 518 aa12.69□□□□□ -0.38
SHMT2-227ENST00000557269 RXFP3Q9NSD7 469 aa12.69□□□□□ -0.38
SHMT2-227ENST00000557269 CATSPERZQ9NTU4 200 aa12.69□□□□□ -0.38
SHMT2-227ENST00000557269 NINJ2Q9NZG7 142 aa12.69□□□□□ -0.38
SHMT2-227ENST00000557269 NCDNQ9UBB6 729 aa12.69□□□□□ -0.38
SHMT2-227ENST00000557269 PRKAB1Q9Y478 270 aa12.69□□□□□ -0.38
SHMT2-227ENST00000557269 ARHGAP33O14559 1287 aa12.68□□□□□ -0.38
SHMT2-227ENST00000557269 KHNYNO15037 678 aaKnown RBP12.68□□□□□ -0.38
SHMT2-227ENST00000557269 SGTAO43765 313 aa12.68□□□□□ -0.38
SHMT2-227ENST00000557269 OR1I1O60431 355 aa12.68□□□□□ -0.38
SHMT2-227ENST00000557269 DNAJC6O75061 913 aa12.68□□□□□ -0.38
SHMT2-227ENST00000557269 ASMTLO95671 621 aa12.68□□□□□ -0.38
SHMT2-227ENST00000557269 C1QAP02745 245 aa12.68□□□□□ -0.38
SHMT2-227ENST00000557269 ZNF806P0C7X5 589 aa12.68□□□□□ -0.38
SHMT2-227ENST00000557269 ZNF8P17098 575 aaPredicted RBP12.68□□□□□ -0.38
SHMT2-227ENST00000557269 PAMP19021 973 aa12.68□□□□□ -0.38
SHMT2-227ENST00000557269 SRP54P61011 504 aaKnown RBP12.68□□□□□ -0.38
SHMT2-227ENST00000557269 TMEM115Q12893 351 aaPredicted RBP12.68□□□□□ -0.38
SHMT2-227ENST00000557269 CTBP1Q13363 440 aa12.68□□□□□ -0.38
SHMT2-227ENST00000557269 PTK2BQ14289 1009 aa12.68□□□□□ -0.38
SHMT2-227ENST00000557269 HLA-BQ31612 363 aa12.68□□□□□ -0.38
SHMT2-227ENST00000557269 FASTKD1Q53R41 847 aaKnown RBP12.68□□□□□ -0.38
SHMT2-227ENST00000557269 ZNF789Q5FWF6 425 aa12.68□□□□□ -0.38
SHMT2-227ENST00000557269 DET1Q7L5Y6 550 aa12.68□□□□□ -0.38
SHMT2-227ENST00000557269 RD3Q7Z3Z2 195 aa12.68□□□□□ -0.38
SHMT2-227ENST00000557269 RABEPKQ7Z6M1 372 aa12.68□□□□□ -0.38
SHMT2-227ENST00000557269 KCNMB4Q86W47 210 aa12.68□□□□□ -0.38
SHMT2-227ENST00000557269 DCP2Q8IU60 420 aaKnown RBP12.68□□□□□ -0.38
SHMT2-227ENST00000557269 PHYKPLQ8IUZ5 450 aa12.68□□□□□ -0.38
SHMT2-227ENST00000557269 DENND6AQ8IWF6 608 aa12.68□□□□□ -0.38
SHMT2-227ENST00000557269 PALM2Q8IXS6 379 aa12.68□□□□□ -0.38
SHMT2-227ENST00000557269 RBFAQ8N0V3 343 aa12.68□□□□□ -0.38
SHMT2-227ENST00000557269 EIF1ADQ8N9N8 165 aaKnown RBP12.68□□□□□ -0.38
SHMT2-227ENST00000557269 GPR150Q8NGU9 434 aa12.68□□□□□ -0.38
SHMT2-227ENST00000557269 GSDMBQ8TAX9 411 aa12.68□□□□□ -0.38
SHMT2-227ENST00000557269 ULK4Q96C45 1275 aa12.68□□□□□ -0.38
SHMT2-227ENST00000557269 CERS2Q96G23 380 aa12.68□□□□□ -0.38
SHMT2-227ENST00000557269 CDC42EP4Q9H3Q1 356 aaKnown RBP12.68□□□□□ -0.38
SHMT2-227ENST00000557269 SMYD2Q9NRG4 433 aa12.68□□□□□ -0.38
SHMT2-227ENST00000557269 TM7SF3Q9NS93 570 aa12.68□□□□□ -0.38
SHMT2-227ENST00000557269 IARS2Q9NSE4 1012 aaKnown RBP12.68□□□□□ -0.38
SHMT2-227ENST00000557269 SEMA4GQ9NTN9 838 aa12.68□□□□□ -0.38
SHMT2-227ENST00000557269 ZDHHC3Q9NYG2 299 aa12.68□□□□□ -0.38
SHMT2-227ENST00000557269 MOCS1Q9NZB8 636 aa12.68□□□□□ -0.38
SHMT2-227ENST00000557269 KLQ9UEF7 1012 aa12.68□□□□□ -0.38
SHMT2-227ENST00000557269 SUFUQ9UMX1 484 aa12.68□□□□□ -0.38
SHMT2-227ENST00000557269 PRSS21Q9Y6M0 314 aa12.68□□□□□ -0.38
SHMT2-227ENST00000557269 ADAMTS9Q9P2N4 1935 aa12.68□□□□□ -0.38
SHMT2-227ENST00000557269 IGLV3-16A0A075B6K0 115 aa12.67□□□□□ -0.38
SHMT2-227ENST00000557269 TCRBV9S1A1TA0A576 114 aa12.67□□□□□ -0.38
SHMT2-227ENST00000557269 LNP1A1A4G5 178 aa12.67□□□□□ -0.38
SHMT2-227ENST00000557269 PRSS38A1L453 326 aa12.67□□□□□ -0.38
SHMT2-227ENST00000557269 CXorf49A8MYA2 514 aaPredicted RBP12.67□□□□□ -0.38
SHMT2-227ENST00000557269 MAGEC1O60732 1142 aa12.67□□□□□ -0.38
SHMT2-227ENST00000557269 ENGP17813 658 aa12.67□□□□□ -0.38
SHMT2-227ENST00000557269 HTR1BP28222 390 aa12.67□□□□□ -0.38
SHMT2-227ENST00000557269 CTSCP53634 463 aa12.67□□□□□ -0.38
SHMT2-227ENST00000557269 IL9RQ01113 521 aa12.67□□□□□ -0.38
SHMT2-227ENST00000557269 FRG1Q14331 258 aaKnown RBP12.67□□□□□ -0.38
SHMT2-227ENST00000557269 TCEA2Q15560 299 aa12.67□□□□□ -0.38
SHMT2-227ENST00000557269 ZNF423Q2M1K9 1284 aa12.67□□□□□ -0.38
SHMT2-227ENST00000557269 LDLRAP1Q5SW96 308 aa12.67□□□□□ -0.38
SHMT2-227ENST00000557269 WDR93Q6P2C0 686 aa12.67□□□□□ -0.38
SHMT2-227ENST00000557269 C3orf62Q6ZUJ4 267 aa12.67□□□□□ -0.38
SHMT2-227ENST00000557269 PARGQ86W56 976 aa12.67□□□□□ -0.38
SHMT2-227ENST00000557269 HID1Q8IV36 788 aa12.67□□□□□ -0.38
SHMT2-227ENST00000557269 ZNF547Q8IVP9 402 aa12.67□□□□□ -0.38
SHMT2-227ENST00000557269 CLDN19Q8N6F1 224 aa12.67□□□□□ -0.38
SHMT2-227ENST00000557269 GPR161Q8N6U8 529 aaKnown RBP12.67□□□□□ -0.38
SHMT2-227ENST00000557269 RUBCNQ92622 972 aa12.67□□□□□ -0.38
SHMT2-227ENST00000557269 SKA1Q96BD8 255 aa12.67□□□□□ -0.38
SHMT2-227ENST00000557269 SGF29Q96ES7 293 aa12.67□□□□□ -0.38
SHMT2-227ENST00000557269 SCARF2Q96GP6 870 aaPredicted RBP12.67□□□□□ -0.38
SHMT2-227ENST00000557269 COPS8Q99627 209 aa12.67□□□□□ -0.38
SHMT2-227ENST00000557269 NUSAP1Q9BXS6 441 aaKnown RBP12.67□□□□□ -0.38
SHMT2-227ENST00000557269 ERVMER34-1Q9H9K5 563 aa12.67□□□□□ -0.38
SHMT2-227ENST00000557269 CYP4F12Q9HCS2 524 aa12.67□□□□□ -0.38
SHMT2-227ENST00000557269 DNAJC28Q9NX36 388 aa12.67□□□□□ -0.38
SHMT2-227ENST00000557269 MOSPD1Q9UJG1 213 aa12.67□□□□□ -0.38
SHMT2-227ENST00000557269 PLEKHM1Q9Y4G2 1056 aa12.67□□□□□ -0.38
SHMT2-227ENST00000557269 ST14Q9Y5Y6 855 aa12.67□□□□□ -0.38
SHMT2-227ENST00000557269 TMEM131Q92545 1883 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 OR2AG2A6NM03 316 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 TNFRSF10CO14798 259 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 CHUKO15111 745 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 VEGFDO43915 354 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 NUAK1O60285 661 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 SDC3O75056 442 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 CDK14O94921 469 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 S1PR4O95977 384 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 CSF2P04141 144 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 IVLP07476 585 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 CELA2BP08218 269 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-227ENST00000557269 NME1P15531 152 aaKnown RBP12.66□□□□□ -0.38
SHMT2-227ENST00000557269 KELP23276 732 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 GABRB3P28472 473 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms