RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	ANKRD20A8P	Q5CZ79	823 aa		12.48	□□□□□ -0.41
SHMT2-223	ENST00000556689	CACHD1	Q5VU97	1274 aa		12.48	□□□□□ -0.41
SHMT2-223	ENST00000556689	CYB5D1	Q6P9G0	228 aa		12.48	□□□□□ -0.41
SHMT2-223	ENST00000556689	PPP1R3B	Q86XI6	285 aa		12.48	□□□□□ -0.41
SHMT2-223	ENST00000556689	LYSMD1	Q96S90	227 aa		12.48	□□□□□ -0.41
SHMT2-223	ENST00000556689	OSGEPL1	Q9H4B0	414 aa		12.48	□□□□□ -0.41
SHMT2-223	ENST00000556689	PCDH9	Q9HC56	1237 aa		12.48	□□□□□ -0.41
SHMT2-223	ENST00000556689	TRIM39	Q9HCM9	518 aa		12.48	□□□□□ -0.41
SHMT2-223	ENST00000556689	LHX9	Q9NQ69	397 aa		12.48	□□□□□ -0.41
SHMT2-223	ENST00000556689	HAUS2	Q9NVX0	235 aa		12.48	□□□□□ -0.41
SHMT2-223	ENST00000556689	RBM22	Q9NW64	420 aa	Known RBP eCLIP	12.48	□□□□□ -0.41	1e-9	■■■■□ 20
SHMT2-223	ENST00000556689	CUEDC1	Q9NWM3	386 aa	Predicted RBP	12.48	□□□□□ -0.41
SHMT2-223	ENST00000556689	PKD2L2	Q9NZM6	624 aa		12.48	□□□□□ -0.41
SHMT2-223	ENST00000556689	SCHIP1	Q9P0W5	487 aa	Predicted RBP	12.48	□□□□□ -0.41
SHMT2-223	ENST00000556689	MYO1A	Q9UBC5	1043 aa		12.48	□□□□□ -0.41
SHMT2-223	ENST00000556689	MYO6	Q9UM54	1294 aa		12.48	□□□□□ -0.41
SHMT2-223	ENST00000556689	RPL26L1	Q9UNX3	145 aa	Known RBP	12.48	□□□□□ -0.41
SHMT2-223	ENST00000556689	MATN3	O15232	486 aa		12.47	□□□□□ -0.41
SHMT2-223	ENST00000556689	DNAJB5	O75953	348 aa		12.47	□□□□□ -0.41
SHMT2-223	ENST00000556689	SLC25A14	O95258	325 aa	Predicted RBP	12.47	□□□□□ -0.41
SHMT2-223	ENST00000556689	TCF4	P15884	667 aa		12.47	□□□□□ -0.41
SHMT2-223	ENST00000556689	ZNF165	P49910	485 aa		12.47	□□□□□ -0.41
SHMT2-223	ENST00000556689	PGD	P52209	483 aa		12.47	□□□□□ -0.41
SHMT2-223	ENST00000556689	CCDC122	Q5T0U0	273 aa		12.47	□□□□□ -0.41
SHMT2-223	ENST00000556689	ALG1L	Q6GMV1	187 aa		12.47	□□□□□ -0.41
SHMT2-223	ENST00000556689	TIGD7	Q6NT04	549 aa	Predicted RBP	12.47	□□□□□ -0.41
SHMT2-223	ENST00000556689	SASS6	Q6UVJ0	657 aa		12.47	□□□□□ -0.41
SHMT2-223	ENST00000556689	LPCAT1	Q8NF37	534 aa		12.47	□□□□□ -0.41
SHMT2-223	ENST00000556689	CT55	Q8WUE5	264 aa		12.47	□□□□□ -0.41
SHMT2-223	ENST00000556689	TEKT4	Q8WW24	435 aa		12.47	□□□□□ -0.41
SHMT2-223	ENST00000556689	THAP4	Q8WY91	577 aa		12.47	□□□□□ -0.41
SHMT2-223	ENST00000556689	KLHL6	Q8WZ60	621 aa		12.47	□□□□□ -0.41
SHMT2-223	ENST00000556689	SEC14L1	Q92503	715 aa		12.47	□□□□□ -0.41
SHMT2-223	ENST00000556689	MAML1	Q92585	1016 aa		12.47	□□□□□ -0.41
SHMT2-223	ENST00000556689	ZNF653	Q96CK0	615 aa		12.47	□□□□□ -0.41
SHMT2-223	ENST00000556689	ZDHHC12	Q96GR4	267 aa		12.47	□□□□□ -0.41
SHMT2-223	ENST00000556689	MLPH	Q9BV36	600 aa	Predicted RBP	12.47	□□□□□ -0.41
SHMT2-223	ENST00000556689	TDRD1	Q9BXT4	1180 aa	Known RBP	12.47	□□□□□ -0.41
SHMT2-223	ENST00000556689	GPR87	Q9BY21	358 aa		12.47	□□□□□ -0.41
SHMT2-223	ENST00000556689	OR2AG1	Q9H205	316 aa		12.47	□□□□□ -0.41
SHMT2-223	ENST00000556689	HAUS4	Q9H6D7	363 aa		12.47	□□□□□ -0.41
SHMT2-223	ENST00000556689	PCDH18	Q9HCL0	1135 aa		12.47	□□□□□ -0.41
SHMT2-223	ENST00000556689	PDE7B	Q9NP56	450 aa		12.47	□□□□□ -0.41
SHMT2-223	ENST00000556689	ARFGAP3	Q9NP61	516 aa		12.47	□□□□□ -0.41
SHMT2-223	ENST00000556689	ZNF624	Q9P2J8	865 aa	Predicted RBP	12.47	□□□□□ -0.41
SHMT2-223	ENST00000556689	AMACR	Q9UHK6	382 aa		12.47	□□□□□ -0.41
SHMT2-223	ENST00000556689	MAP4K5	Q9Y4K4	846 aa		12.47	□□□□□ -0.41
SHMT2-223	ENST00000556689	TTLL3	Q9Y4R7	772 aa		12.47	□□□□□ -0.41
SHMT2-223	ENST00000556689	UTP20	O75691	2785 aa	Known RBP	12.47	□□□□□ -0.41
SHMT2-223	ENST00000556689	ENO4	A6NNW6	628 aa		12.46	□□□□□ -0.41
SHMT2-223	ENST00000556689	ANKRD66	B4E2M5	251 aa		12.46	□□□□□ -0.41
SHMT2-223	ENST00000556689	GPR89A	B7ZAQ6	455 aa		12.46	□□□□□ -0.41
SHMT2-223	ENST00000556689	KIF1C	O43896	1103 aa	Known RBP	12.46	□□□□□ -0.41
SHMT2-223	ENST00000556689	SEMA7A	O75326	666 aa		12.46	□□□□□ -0.41
SHMT2-223	ENST00000556689	MTA2	O94776	668 aa		12.46	□□□□□ -0.41
SHMT2-223	ENST00000556689	GPR89B	P0CG08	455 aa		12.46	□□□□□ -0.41
SHMT2-223	ENST00000556689	MYBL1	P10243	752 aa		12.46	□□□□□ -0.41
SHMT2-223	ENST00000556689	IL4R	P24394	825 aa		12.46	□□□□□ -0.41
SHMT2-223	ENST00000556689	CCNC	P24863	283 aa		12.46	□□□□□ -0.41
SHMT2-223	ENST00000556689	GALNT2	Q10471	571 aa		12.46	□□□□□ -0.41
SHMT2-223	ENST00000556689	PIGH	Q14442	188 aa	Predicted RBP	12.46	□□□□□ -0.41
SHMT2-223	ENST00000556689	KRT81	Q14533	505 aa		12.46	□□□□□ -0.41
SHMT2-223	ENST00000556689	INSC	Q1MX18	579 aa		12.46	□□□□□ -0.41
SHMT2-223	ENST00000556689	TDRD12	Q587J7	1177 aa	Known RBP	12.46	□□□□□ -0.41
SHMT2-223	ENST00000556689	ZNF648	Q5T619	568 aa	Predicted RBP	12.46	□□□□□ -0.41
SHMT2-223	ENST00000556689	TXNRD3NB	Q6F5E7	133 aa		12.46	□□□□□ -0.41
SHMT2-223	ENST00000556689	FAM92B	Q6ZTR7	304 aa		12.46	□□□□□ -0.41
SHMT2-223	ENST00000556689	ZNF571	Q7Z3V5	609 aa	Predicted RBP	12.46	□□□□□ -0.41
SHMT2-223	ENST00000556689	PRSS42	Q7Z5A4	293 aa		12.46	□□□□□ -0.41
SHMT2-223	ENST00000556689	ARRDC2	Q8TBH0	407 aa		12.46	□□□□□ -0.41
SHMT2-223	ENST00000556689	TRIM11	Q96F44	468 aa		12.46	□□□□□ -0.41
SHMT2-223	ENST00000556689	FCRL4	Q96PJ5	515 aa		12.46	□□□□□ -0.41
SHMT2-223	ENST00000556689	SLC25A23	Q9BV35	468 aa		12.46	□□□□□ -0.41
SHMT2-223	ENST00000556689	SPATA16	Q9BXB7	569 aa		12.46	□□□□□ -0.41
SHMT2-223	ENST00000556689	TRIM55	Q9BYV6	548 aa		12.46	□□□□□ -0.41
SHMT2-223	ENST00000556689	ACTL8	Q9H568	366 aa		12.46	□□□□□ -0.41
SHMT2-223	ENST00000556689	POT1	Q9NUX5	634 aa		12.46	□□□□□ -0.41
SHMT2-223	ENST00000556689	RCOR3	Q9P2K3	495 aa	Predicted RBP	12.46	□□□□□ -0.41
SHMT2-223	ENST00000556689	EPHA6	Q9UF33	1036 aa		12.46	□□□□□ -0.41
SHMT2-223	ENST00000556689	SLC23A2	Q9UGH3	650 aa		12.46	□□□□□ -0.41
SHMT2-223	ENST00000556689	ADGRG1	Q9Y653	693 aa		12.46	□□□□□ -0.41
SHMT2-223	ENST00000556689	PDZK1P1	A8MUH7	402 aa		12.45	□□□□□ -0.42
SHMT2-223	ENST00000556689	DDX3X	O00571	662 aa	Known RBP eCLIP	12.45	□□□□□ -0.42	8e-15	■■□□□ 14.3
SHMT2-223	ENST00000556689	CHUK	O15111	745 aa		12.45	□□□□□ -0.42
SHMT2-223	ENST00000556689	KMO	O15229	486 aa		12.45	□□□□□ -0.42
SHMT2-223	ENST00000556689	DDAH2	O95865	285 aa		12.45	□□□□□ -0.42
SHMT2-223	ENST00000556689	ZNF7	P17097	686 aa	Predicted RBP	12.45	□□□□□ -0.42
SHMT2-223	ENST00000556689	NELFE	P18615	380 aa	Known RBP	12.45	□□□□□ -0.42
SHMT2-223	ENST00000556689	PTPN4	P29074	926 aa		12.45	□□□□□ -0.42
SHMT2-223	ENST00000556689	CCL11	P51671	97 aa		12.45	□□□□□ -0.42
SHMT2-223	ENST00000556689	RPS15	P62841	145 aa	Known RBP	12.45	□□□□□ -0.42
SHMT2-223	ENST00000556689	MYL5	Q02045	173 aa		12.45	□□□□□ -0.42
SHMT2-223	ENST00000556689	NIPAL4	Q0D2K0	466 aa		12.45	□□□□□ -0.42
SHMT2-223	ENST00000556689	MMRN1	Q13201	1228 aa		12.45	□□□□□ -0.42
SHMT2-223	ENST00000556689	SEPT7	Q16181	437 aa	Known RBP	12.45	□□□□□ -0.42
SHMT2-223	ENST00000556689	ASIC2	Q16515	512 aa		12.45	□□□□□ -0.42
SHMT2-223	ENST00000556689	IFI16	Q16666	785 aa	Known RBP	12.45	□□□□□ -0.42
SHMT2-223	ENST00000556689	QPCT	Q16769	361 aa		12.45	□□□□□ -0.42
SHMT2-223	ENST00000556689	UGT8	Q16880	541 aa		12.45	□□□□□ -0.42
SHMT2-223	ENST00000556689	NADK2	Q4G0N4	442 aa		12.45	□□□□□ -0.42

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