RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 ERGIC3Q9Y282 383 aa17.42■□□□□ 0.38
SYNE3-202ENST00000553340 B3GNT3Q9Y2A9 372 aa17.42■□□□□ 0.38
SYNE3-202ENST00000553340 CORINQ9Y5Q5 1042 aa17.42■□□□□ 0.38
SYNE3-202ENST00000553340 C1orf232A0A0U1RR37 186 aa17.42■□□□□ 0.38
SYNE3-202ENST00000553340 KPNA6O60684 536 aa17.42■□□□□ 0.38
SYNE3-202ENST00000553340 NPPAP01160 153 aa17.42■□□□□ 0.38
SYNE3-202ENST00000553340 ATXN1LP0C7T5 689 aaKnown RBP17.42■□□□□ 0.38
SYNE3-202ENST00000553340 ODC1P11926 461 aa17.42■□□□□ 0.38
SYNE3-202ENST00000553340 GNA12Q03113 381 aa17.42■□□□□ 0.38
SYNE3-202ENST00000553340 ACVR1Q04771 509 aa17.42■□□□□ 0.38
SYNE3-202ENST00000553340 XAF1Q6GPH4 301 aa17.42■□□□□ 0.38
SYNE3-202ENST00000553340 TFAP2DQ7Z6R9 452 aa17.42■□□□□ 0.38
SYNE3-202ENST00000553340 METTL23Q86XA0 190 aa17.42■□□□□ 0.38
SYNE3-202ENST00000553340 RIMKLAQ8IXN7 391 aa17.42■□□□□ 0.38
SYNE3-202ENST00000553340 CLEC4FQ8N1N0 589 aa17.42■□□□□ 0.38
SYNE3-202ENST00000553340 PDZD8Q8NEN9 1154 aa17.42■□□□□ 0.38
SYNE3-202ENST00000553340 AARSD1Q9BTE6 412 aaKnown RBP17.42■□□□□ 0.38
SYNE3-202ENST00000553340 NTN4Q9HB63 628 aa17.42■□□□□ 0.38
SYNE3-202ENST00000553340 ADARB2Q9NS39 739 aaKnown RBP17.42■□□□□ 0.38
SYNE3-202ENST00000553340 RIC8BQ9NVN3 520 aa17.42■□□□□ 0.38
SYNE3-202ENST00000553340 MIOSQ9NXC5 875 aa17.42■□□□□ 0.38
SYNE3-202ENST00000553340 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP17.42■□□□□ 0.38
SYNE3-202ENST00000553340 UTRNP46939 3433 aa17.42■□□□□ 0.38
SYNE3-202ENST00000553340 SYNCRIPO60506 623 aaKnown RBP17.41■□□□□ 0.38
SYNE3-202ENST00000553340 TULP3O75386 442 aa17.41■□□□□ 0.38
SYNE3-202ENST00000553340 THRBP10828 461 aa17.41■□□□□ 0.38
SYNE3-202ENST00000553340 SHMT2P34897 504 aa17.41■□□□□ 0.38
SYNE3-202ENST00000553340 OR4D2P58180 307 aa17.41■□□□□ 0.38
SYNE3-202ENST00000553340 RBM48Q5RL73 367 aaKnown RBP17.41■□□□□ 0.38
SYNE3-202ENST00000553340 THAP5Q7Z6K1 395 aa17.41■□□□□ 0.38
SYNE3-202ENST00000553340 ITIH5Q86UX2 942 aa17.41■□□□□ 0.38
SYNE3-202ENST00000553340 HID1Q8IV36 788 aa17.41■□□□□ 0.38
SYNE3-202ENST00000553340 PEX13Q92968 403 aa17.41■□□□□ 0.38
SYNE3-202ENST00000553340 BEGAINQ9BUH8 593 aa17.41■□□□□ 0.38
SYNE3-202ENST00000553340 LHPPQ9H008 270 aa17.41■□□□□ 0.38
SYNE3-202ENST00000553340 ADNPQ9H2P0 1102 aa17.41■□□□□ 0.38
SYNE3-202ENST00000553340 HPS4Q9NQG7 708 aa17.41■□□□□ 0.38
SYNE3-202ENST00000553340 TRIP12Q14669 1992 aaPredicted RBP17.41■□□□□ 0.38
SYNE3-202ENST00000553340 LOC285095A0A1B0GVY8 99 aa17.41■□□□□ 0.38
SYNE3-202ENST00000553340 FAM234BA2RU67 622 aa17.41■□□□□ 0.38
SYNE3-202ENST00000553340 CCDC162PA2VCL2 907 aa17.41■□□□□ 0.38
SYNE3-202ENST00000553340 RSL1D1O76021 490 aaKnown RBP17.41■□□□□ 0.38
SYNE3-202ENST00000553340 HAPLN1P10915 354 aaPredicted RBP17.41■□□□□ 0.38
SYNE3-202ENST00000553340 ERVK-8P63133 956 aa17.41■□□□□ 0.38
SYNE3-202ENST00000553340 YWHAHQ04917 246 aaPredicted RBP17.41■□□□□ 0.38
SYNE3-202ENST00000553340 BFSP2Q13515 415 aa17.41■□□□□ 0.38
SYNE3-202ENST00000553340 SEMA3AQ14563 771 aa17.41■□□□□ 0.38
SYNE3-202ENST00000553340 BLOC1S5Q8TDH9 187 aa17.41■□□□□ 0.38
SYNE3-202ENST00000553340 TMBIM1Q969X1 311 aa17.41■□□□□ 0.38
SYNE3-202ENST00000553340 C1orf74Q96LT6 269 aa17.41■□□□□ 0.38
SYNE3-202ENST00000553340 TMEM209Q96SK2 561 aa17.41■□□□□ 0.38
SYNE3-202ENST00000553340 PAAF1Q9BRP4 392 aa17.41■□□□□ 0.38
SYNE3-202ENST00000553340 CATSPERZQ9NTU4 200 aa17.41■□□□□ 0.38
SYNE3-202ENST00000553340 ZIM2Q9NZV7 527 aa17.41■□□□□ 0.38
SYNE3-202ENST00000553340 PCDHB3Q9Y5E6 796 aa17.41■□□□□ 0.38
SYNE3-202ENST00000553340 C16orf96A6NNT2 1141 aa17.4■□□□□ 0.38
SYNE3-202ENST00000553340 ALPLP05186 524 aa17.4■□□□□ 0.38
SYNE3-202ENST00000553340 RPS17P08708 135 aaKnown RBP17.4■□□□□ 0.38
SYNE3-202ENST00000553340 UROSP10746 265 aa17.4■□□□□ 0.38
SYNE3-202ENST00000553340 CDH3P22223 829 aa17.4■□□□□ 0.38
SYNE3-202ENST00000553340 MAGEA10P43363 369 aaPredicted RBP17.4■□□□□ 0.38
SYNE3-202ENST00000553340 PGFP49763 221 aa17.4■□□□□ 0.38
SYNE3-202ENST00000553340 PSEN2P49810 448 aa17.4■□□□□ 0.38
SYNE3-202ENST00000553340 ITGADQ13349 1161 aa17.4■□□□□ 0.38
SYNE3-202ENST00000553340 PTPRCAPQ14761 206 aa17.4■□□□□ 0.38
SYNE3-202ENST00000553340 FBXO48Q5FWF7 155 aa17.4■□□□□ 0.38
SYNE3-202ENST00000553340 XKR7Q5GH72 579 aa17.4■□□□□ 0.38
SYNE3-202ENST00000553340 DEFB132Q7Z7B7 95 aa17.4■□□□□ 0.38
SYNE3-202ENST00000553340 ZC3H15Q8WU90 426 aaKnown RBP17.4■□□□□ 0.38
SYNE3-202ENST00000553340 CDCA5Q96FF9 252 aa17.4■□□□□ 0.38
SYNE3-202ENST00000553340 DERL2Q9GZP9 239 aa17.4■□□□□ 0.38
SYNE3-202ENST00000553340 RAD21L1Q9H4I0 556 aa17.4■□□□□ 0.38
SYNE3-202ENST00000553340 FAM105AQ9NUU6 356 aa17.4■□□□□ 0.38
SYNE3-202ENST00000553340 ARL5AQ9Y689 179 aa17.4■□□□□ 0.38
SYNE3-202ENST00000553340 SYCE1LA8MT33 242 aa17.4■□□□□ 0.38
SYNE3-202ENST00000553340 RPP40O75818 363 aaKnown RBP17.4■□□□□ 0.38
SYNE3-202ENST00000553340 OGNP20774 298 aaKnown RBP17.4■□□□□ 0.38
SYNE3-202ENST00000553340 CRHBPP24387 322 aa17.4■□□□□ 0.38
SYNE3-202ENST00000553340 GSTM2P28161 218 aa17.4■□□□□ 0.38
SYNE3-202ENST00000553340 RPL9P32969 192 aaKnown RBP17.4■□□□□ 0.38
SYNE3-202ENST00000553340 STC1P52823 247 aa17.4■□□□□ 0.38
SYNE3-202ENST00000553340 KCNC4Q03721 635 aa17.4■□□□□ 0.38
SYNE3-202ENST00000553340 SKIV2LQ15477 1246 aaKnown RBP17.4■□□□□ 0.38
SYNE3-202ENST00000553340 PIK3R6Q5UE93 754 aa17.4■□□□□ 0.38
SYNE3-202ENST00000553340 EGFLAMQ63HQ2 1017 aa17.4■□□□□ 0.38
SYNE3-202ENST00000553340 STK32CQ86UX6 486 aa17.4■□□□□ 0.38
SYNE3-202ENST00000553340 C8orf59Q8N0T1 100 aaPredicted RBP17.4■□□□□ 0.38
SYNE3-202ENST00000553340 ARRDC2Q8TBH0 407 aa17.4■□□□□ 0.38
SYNE3-202ENST00000553340 PSMG2Q969U7 264 aa17.4■□□□□ 0.38
SYNE3-202ENST00000553340 SERPINB11Q96P15 392 aa17.4■□□□□ 0.38
SYNE3-202ENST00000553340 WDR37Q9Y2I8 494 aa17.4■□□□□ 0.38
SYNE3-202ENST00000553340 ANKRD12Q6UB98 2062 aa17.39■□□□□ 0.38
SYNE3-202ENST00000553340 UPK1AO00322 258 aa17.39■□□□□ 0.37
SYNE3-202ENST00000553340 ECI2O75521 394 aa17.39■□□□□ 0.37
SYNE3-202ENST00000553340 RHOBTB1O94844 696 aa17.39■□□□□ 0.37
SYNE3-202ENST00000553340 PRSS23O95084 383 aa17.39■□□□□ 0.37
SYNE3-202ENST00000553340 RAP2AP10114 183 aa17.39■□□□□ 0.37
SYNE3-202ENST00000553340 RHOQP17081 205 aa17.39■□□□□ 0.37
SYNE3-202ENST00000553340 PRKG2Q13237 762 aa17.39■□□□□ 0.37
SYNE3-202ENST00000553340 UPP1Q16831 310 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms