RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 ATP6AP1Q15904 470 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 PTPRNQ16849 979 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 TYSND1Q2T9J0 566 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 SLC36A3Q495N2 470 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 CLLU1OSQ5K130 101 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 VARS2Q5ST30 1063 aaKnown RBP7.44□□□□□ -1.22
LIMA1-213ENST00000552720 INTS11Q5TA45 600 aaKnown RBP7.44□□□□□ -1.22
LIMA1-213ENST00000552720 ANKS6Q68DC2 871 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 SLC2A7Q6PXP3 512 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 RSPO2Q6UXX9 243 aaPredicted RBP7.44□□□□□ -1.22
LIMA1-213ENST00000552720 ZNF598Q86UK7 904 aaKnown RBP7.44□□□□□ -1.22
LIMA1-213ENST00000552720 RALGPS2Q86X27 583 aaPredicted RBP7.44□□□□□ -1.22
LIMA1-213ENST00000552720 C2orf69Q8N8R5 385 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 CDYL2Q8N8U2 506 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 MFSD2AQ8NA29 543 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 GPR150Q8NGU9 434 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 STAG3L4Q8TBR4 150 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 KIAA1191Q96A73 305 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 ISOC1Q96CN7 298 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 RMDN1Q96DB5 314 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 TRIB3Q96RU7 358 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 KCTD14Q9BQ13 255 aaPredicted RBP7.44□□□□□ -1.22
LIMA1-213ENST00000552720 SPON2Q9BUD6 331 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 ARHGAP39Q9C0H5 1083 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 NAA50Q9GZZ1 169 aaKnown RBP7.44□□□□□ -1.22
LIMA1-213ENST00000552720 PDFQ9HBH1 243 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 AIG1Q9NVV5 245 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 EIF2B4Q9UI10 523 aaKnown RBP7.44□□□□□ -1.22
LIMA1-213ENST00000552720 MAGED1Q9Y5V3 778 aaPredicted RBP7.44□□□□□ -1.22
LIMA1-213ENST00000552720 SQORQ9Y6N5 450 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 DRGXA6NNA5 263 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 BMP10O95393 424 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 SERPINF2P08697 491 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 RPS17P08708 135 aaKnown RBP7.43□□□□□ -1.22
LIMA1-213ENST00000552720 PRR35P0CG20 571 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 IDO1P14902 403 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 HRH2P25021 359 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 HOXD9P28356 352 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-213ENST00000552720 ENTPD1P49961 510 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 HTR6P50406 440 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 ZNF140P52738 457 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-213ENST00000552720 KCNK10P57789 538 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 BNIP2Q12982 314 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 PMS2P3Q13401 168 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 RCAN2Q14206 197 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 MYBPC3Q14896 1274 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 TRIP4Q15650 581 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-213ENST00000552720 RBBP7Q16576 425 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 ZIK1Q3SY52 487 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-213ENST00000552720 NANOGP8Q6NSW7 305 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 C17orf99Q6UX52 265 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 GPR141Q7Z602 305 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 EGFL6Q8IUX8 553 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 ERI1Q8IV48 349 aaKnown RBP7.43□□□□□ -1.22
LIMA1-213ENST00000552720 LGI2Q8N0V4 545 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 TRPV3Q8NET8 790 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 TET1Q8NFU7 2136 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 HM13Q8TCT9 377 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 GIPC2Q8TF65 315 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 EEF1AKMT1Q8WVE0 214 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 TRIB2Q92519 343 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 C12orf43Q96C57 262 aaKnown RBP7.43□□□□□ -1.22
LIMA1-213ENST00000552720 CENPNQ96H22 339 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-213ENST00000552720 VPS50Q96JG6 964 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 ZNF599Q96NL3 588 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 BIRC8Q96P09 236 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 PLEKHG4BQ96PX9 1271 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 ASB2Q96Q27 587 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 SEPT5Q99719 369 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-213ENST00000552720 HGH1Q9BTY7 390 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 NPLQ9BXD5 320 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-213ENST00000552720 DERL2Q9GZP9 239 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 FBXO44Q9H4M3 255 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 NANOGQ9H9S0 305 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 ZFYVE28Q9HCC9 887 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 SARS2Q9NP81 518 aaKnown RBP7.43□□□□□ -1.22
LIMA1-213ENST00000552720 LTB4R2Q9NPC1 389 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 TIMMDC1Q9NPL8 285 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 GID8Q9NWU2 228 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 FNIP2Q9P278 1114 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 FKBPLQ9UIM3 349 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 PCTPQ9UKL6 214 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 PCDHGC4Q9Y5F7 938 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 FADS3Q9Y5Q0 445 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 LCHNA4D1U4 455 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 IQCA1LA6NCM1 817 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 CCDC154A6NI56 674 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 CLOCKO15516 846 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 OAZ2O95190 189 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 ATE1O95260 518 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 NDST3O95803 873 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 TSPAN12O95859 305 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 PRLP01236 227 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 PCNAP12004 261 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 OGNP20774 298 aaKnown RBP7.43□□□□□ -1.22
LIMA1-213ENST00000552720 CD247P20963 164 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 TACR2P21452 398 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 RFC2P35250 354 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 ARL1P40616 181 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-213ENST00000552720 SGSHP51688 502 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms