RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 ABHD11Q8NFV4 315 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 RAB40AQ8WXH6 277 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 AKAP1Q92667 903 aaKnown RBP eCLIP3.89□□□□□ -1.79
LIMA1-208ENST00000551691 INTS12Q96CB8 462 aaKnown RBP3.89□□□□□ -1.79
LIMA1-208ENST00000551691 CASD1Q96PB1 797 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 GBP5Q96PP8 586 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 ADPGKQ9BRR6 497 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP3.89□□□□□ -1.79
LIMA1-208ENST00000551691 ELOVL1Q9BW60 279 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 IFT27Q9BW83 186 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 PLA2G2FQ9BZM2 168 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 FAM49AQ9H0Q0 323 aaPredicted RBP3.89□□□□□ -1.79
LIMA1-208ENST00000551691 ZNF703Q9H7S9 590 aaPredicted RBP3.89□□□□□ -1.79
LIMA1-208ENST00000551691 SFXN1Q9H9B4 322 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 SAP30LQ9HAJ7 183 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 LMAN1LQ9HAT1 526 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 WDR6Q9NNW5 1121 aaKnown RBP3.89□□□□□ -1.79
LIMA1-208ENST00000551691 AKIP1Q9NQ31 210 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 TLR8Q9NR97 1041 aaKnown RBP3.89□□□□□ -1.79
LIMA1-208ENST00000551691 HEBP1Q9NRV9 189 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 MTMR4Q9NYA4 1195 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 SPG21Q9NZD8 308 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 GIMAP2Q9UG22 337 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 RASAL2Q9UJF2 1139 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 DBNLQ9UJU6 430 aaKnown RBP3.89□□□□□ -1.79
LIMA1-208ENST00000551691 PPIEQ9UNP9 301 aaKnown RBP3.89□□□□□ -1.79
LIMA1-208ENST00000551691 SLC8A2Q9UPR5 921 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 SH2B3Q9UQQ2 575 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 MTMR6Q9Y217 621 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 SESN1Q9Y6P5 492 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 APC2O95996 2303 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 KDM3AQ9Y4C1 1321 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 ZFHX3Q15911 3703 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 FNDC1Q4ZHG4 1894 aaPredicted RBP3.88□□□□□ -1.79
LIMA1-208ENST00000551691 PTPRQQ9UMZ3 2332 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 PCNX2A6NKB5 2137 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 CYP3A7-CYP3A51PA0A087WV96 503 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 FAM90A7PA6NKC0 464 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 FAM90A22PA8MWA6 464 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 FAM90A12PA8MX19 464 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 FAM90A23PA8MXZ1 464 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 M0QZQ0 153 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 CDX4O14627 284 aaPredicted RBP3.88□□□□□ -1.79
LIMA1-208ENST00000551691 SPRY2O43597 315 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 PEX1O43933 1283 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 NMT2O60551 498 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 ERAL1O75616 437 aaKnown RBP3.88□□□□□ -1.79
LIMA1-208ENST00000551691 GJB3O75712 270 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 IPO7O95373 1038 aaKnown RBP3.88□□□□□ -1.79
LIMA1-208ENST00000551691 GGPS1O95749 300 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 C1RP00736 705 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 LGALS2P05162 132 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 GALTP07902 379 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 ELANEP08246 267 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 IL6RP08887 468 aaPredicted RBP3.88□□□□□ -1.79
LIMA1-208ENST00000551691 CEACAM1P13688 526 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 PKMP14618 531 aaKnown RBP3.88□□□□□ -1.79
LIMA1-208ENST00000551691 CDH2P19022 906 aaPredicted RBP3.88□□□□□ -1.79
LIMA1-208ENST00000551691 CYP3A7P24462 503 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 KLRC2P26717 231 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 ITPKBP27987 946 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 DUSP1P28562 367 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 ACSL1P33121 698 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 CPOXP36551 454 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 MSH2P43246 934 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 TNNT3P45378 269 aaPredicted RBP3.88□□□□□ -1.79
LIMA1-208ENST00000551691 MVDP53602 400 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 NTHL1P78549 312 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 AIMP2Q13155 320 aaKnown RBP3.88□□□□□ -1.79
LIMA1-208ENST00000551691 DNASE1L3Q13609 305 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 BMPR2Q13873 1038 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 FRG1Q14331 258 aaKnown RBP3.88□□□□□ -1.79
LIMA1-208ENST00000551691 NONOQ15233 471 aaKnown RBP eCLIP3.88□□□□□ -1.79
LIMA1-208ENST00000551691 SH2D4BQ5SQS7 431 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 MARCH8Q5T0T0 291 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 HECTD3Q5T447 861 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 FAM171A1Q5VUB5 890 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 METRNLQ641Q3 311 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 HIST2H2BCQ6DN03 193 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 DPY19L2P1Q6NXN4 242 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 TTI2Q6NXR4 508 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 CHST9Q7L1S5 443 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 PARS2Q7L3T8 475 aaKnown RBP3.88□□□□□ -1.79
LIMA1-208ENST00000551691 GET4Q7L5D6 327 aaPredicted RBP3.88□□□□□ -1.79
LIMA1-208ENST00000551691 GALNT7Q86SF2 657 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 TADA2BQ86TJ2 420 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 FAM160B2Q86V87 743 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 SNX32Q86XE0 403 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 VRK3Q8IV63 474 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 SCN4BQ8IWT1 228 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 Q8NA96 180 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 GMCL1P1Q8NEA9 526 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 MYCBPAPQ8TBZ2 947 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 SSH3Q8TE77 659 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 HSPH1Q92598 858 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 MOAP1Q96BY2 351 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 TRMT61AQ96FX7 289 aaKnown RBP3.88□□□□□ -1.79
LIMA1-208ENST00000551691 WDYHV1Q96HA8 205 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 CCDC34Q96HJ3 373 aa3.88□□□□□ -1.79
LIMA1-208ENST00000551691 PGBD1Q96JS3 809 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms