RNA–Protein interactions for RNA: ENST00000541586.5

CCM2-218, Transcript of CCM2 scaffold protein, human

TSL 3 BASIC

Gene CCM2, Length 1,719 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCM2-218	ENST00000541586	SLC12A2	P55011	1212 aa		27.56	■■■□□ 2
CCM2-218	ENST00000541586	ZNF528	Q3MIS6	628 aa		27.56	■■■□□ 2
CCM2-218	ENST00000541586	TAF1B	Q53T94	588 aa	Predicted RBP	27.56	■■■□□ 2
CCM2-218	ENST00000541586	AARS2	Q5JTZ9	985 aa	Known RBP	27.56	■■■□□ 2
CCM2-218	ENST00000541586	N4BP2L1	Q5TBK1	243 aa	Predicted RBP	27.56	■■■□□ 2
CCM2-218	ENST00000541586	C16orf46	Q6P387	395 aa		27.56	■■■□□ 2
CCM2-218	ENST00000541586	KYAT3	Q6YP21	454 aa	Known RBP	27.56	■■■□□ 2
CCM2-218	ENST00000541586	ARMC2	Q8NEN0	867 aa		27.56	■■■□□ 2
CCM2-218	ENST00000541586	LPGAT1	Q92604	370 aa		27.56	■■■□□ 2
CCM2-218	ENST00000541586	RAB7B	Q96AH8	199 aa		27.56	■■■□□ 2
CCM2-218	ENST00000541586	FAM126A	Q9BYI3	521 aa	Predicted RBP	27.56	■■■□□ 2
CCM2-218	ENST00000541586	VWA7	Q9Y334	891 aa		27.56	■■■□□ 2
CCM2-218	ENST00000541586	PLRG1	O43660	514 aa	Known RBP	27.55	■■■□□ 2
CCM2-218	ENST00000541586	IGLV3-19	P01714	112 aa		27.55	■■■□□ 2
CCM2-218	ENST00000541586	GSTA1	P08263	222 aa		27.55	■■■□□ 2
CCM2-218	ENST00000541586	ZNF30	P17039	623 aa		27.55	■■■□□ 2
CCM2-218	ENST00000541586	ARHGEF7	Q14155	803 aa		27.55	■■■□□ 2
CCM2-218	ENST00000541586	PDK4	Q16654	411 aa		27.55	■■■□□ 2
CCM2-218	ENST00000541586	TAS2R42	Q7RTR8	314 aa		27.55	■■■□□ 2
CCM2-218	ENST00000541586	GPR26	Q8NDV2	337 aa		27.55	■■■□□ 2
CCM2-218	ENST00000541586	CHMP6	Q96FZ7	201 aa		27.55	■■■□□ 2
CCM2-218	ENST00000541586	ZNF358	Q9NW07	568 aa		27.55	■■■□□ 2
CCM2-218	ENST00000541586	ZSCAN32	Q9NX65	697 aa		27.55	■■■□□ 2
CCM2-218	ENST00000541586	MBD1	Q9UIS9	605 aa	Predicted RBP	27.55	■■■□□ 2
CCM2-218	ENST00000541586	ANKRD6	Q9Y2G4	727 aa		27.55	■■■□□ 2
CCM2-218	ENST00000541586	ZNF106	Q9H2Y7	1883 aa	Known RBP	27.55	■■■□□ 2
CCM2-218	ENST00000541586	GLYATL1P3	A0A0U1RQE8	302 aa		27.55	■■■□□ 2
CCM2-218	ENST00000541586	UBA6	A0AVT1	1052 aa	Predicted RBP	27.55	■■■□□ 2
CCM2-218	ENST00000541586	GOLGA8CP	A6NN73	597 aa		27.55	■■■□□ 2
CCM2-218	ENST00000541586	SEMA4F	O95754	770 aa		27.55	■■■□□ 2
CCM2-218	ENST00000541586	RNF187	Q5TA31	235 aa	Predicted RBP	27.55	■■■□□ 2
CCM2-218	ENST00000541586	WRAP53	Q9BUR4	548 aa	Known RBP	27.55	■■■□□ 2
CCM2-218	ENST00000541586	VPS9D1	Q9Y2B5	631 aa		27.55	■■■□□ 2
CCM2-218	ENST00000541586	ACOT9	Q9Y305	439 aa		27.55	■■■□□ 2
CCM2-218	ENST00000541586	WDR91	A4D1P6	747 aa		27.54	■■■□□ 2
CCM2-218	ENST00000541586	LRRC72	A6NJI9	287 aa		27.54	■■■□□ 2
CCM2-218	ENST00000541586	PFDN6	O15212	129 aa		27.54	■■■□□ 2
CCM2-218	ENST00000541586	SERPINB4	P48594	390 aa		27.54	■■■□□ 2
CCM2-218	ENST00000541586	PTPN5	P54829	565 aa		27.54	■■■□□ 2
CCM2-218	ENST00000541586	CDKN2D	P55273	166 aa		27.54	■■■□□ 2
CCM2-218	ENST00000541586	RPL6	Q02878	288 aa	Known RBP	27.54	■■■□□ 2
CCM2-218	ENST00000541586	ELP6	Q0PNE2	266 aa		27.54	■■■□□ 2
CCM2-218	ENST00000541586	NFATC2	Q13469	925 aa		27.54	■■■□□ 2
CCM2-218	ENST00000541586	FAM45BP	Q6NSW5	357 aa		27.54	■■■□□ 2
CCM2-218	ENST00000541586	RFLNA	Q6ZTI6	216 aa		27.54	■■■□□ 2
CCM2-218	ENST00000541586	SNX20	Q7Z614	316 aa		27.54	■■■□□ 2
CCM2-218	ENST00000541586	FAM45A	Q8TCE6	357 aa		27.54	■■■□□ 2
CCM2-218	ENST00000541586	FAM131C	Q96AQ9	280 aa		27.54	■■■□□ 2
CCM2-218	ENST00000541586	TSPAN17	Q96FV3	270 aa		27.54	■■■□□ 2
CCM2-218	ENST00000541586	TMEM216	Q9P0N5	145 aa		27.54	■■■□□ 2
CCM2-218	ENST00000541586	ZNF318	Q5VUA4	2279 aa		27.53	■■■□□ 2
CCM2-218	ENST00000541586	TCP11X1	B4DZS4	312 aa		27.53	■■■□□ 2
CCM2-218	ENST00000541586	AREL1	O15033	823 aa		27.53	■■■□□ 2
CCM2-218	ENST00000541586	SPINT1	O43278	529 aa		27.53	■■■□□ 2
CCM2-218	ENST00000541586	HR	O43593	1189 aa		27.53	■■■□□ 2
CCM2-218	ENST00000541586	PLIN3	O60664	434 aa		27.53	■■■□□ 2
CCM2-218	ENST00000541586	ITGAL	P20701	1170 aa		27.53	■■■□□ 2
CCM2-218	ENST00000541586	BCKDHB	P21953	392 aa		27.53	■■■□□ 2
CCM2-218	ENST00000541586	SPINT3	P49223	89 aa		27.53	■■■□□ 2
CCM2-218	ENST00000541586	CHRNA6	Q15825	494 aa		27.53	■■■□□ 2
CCM2-218	ENST00000541586	DPPA4	Q7L190	304 aa		27.53	■■■□□ 2
CCM2-218	ENST00000541586	TBRG4	Q969Z0	631 aa	Known RBP eCLIP	27.53	■■■□□ 2	2e-6	■■■■■ 54.9
CCM2-218	ENST00000541586	AARSD1	Q9BTE6	412 aa	Known RBP	27.53	■■■□□ 2
CCM2-218	ENST00000541586	C6orf106	Q9H6K1	298 aa	Predicted RBP	27.53	■■■□□ 2
CCM2-218	ENST00000541586	ASB8	Q9H765	288 aa		27.53	■■■□□ 2
CCM2-218	ENST00000541586	CAMSAP3	Q9P1Y5	1249 aa	Predicted RBP	27.53	■■■□□ 2
CCM2-218	ENST00000541586	OR1I1	O60431	355 aa		27.53	■■■□□ 2
CCM2-218	ENST00000541586	MMP20	O60882	483 aa		27.53	■■■□□ 2
CCM2-218	ENST00000541586	TAC1	P20366	129 aa		27.53	■■■□□ 2
CCM2-218	ENST00000541586	MAT2A	P31153	395 aa	Known RBP	27.53	■■■□□ 2
CCM2-218	ENST00000541586	MMP12	P39900	470 aa		27.53	■■■□□ 2
CCM2-218	ENST00000541586	SUOX	P51687	545 aa		27.53	■■■□□ 2
CCM2-218	ENST00000541586	RALGDS	Q12967	914 aa		27.53	■■■□□ 2
CCM2-218	ENST00000541586	OR2T34	Q8NGX1	318 aa		27.53	■■■□□ 2
CCM2-218	ENST00000541586	BCAS4	Q8TDM0	211 aa		27.53	■■■□□ 2
CCM2-218	ENST00000541586	CXorf40A	Q8TE69	158 aa		27.53	■■■□□ 2
CCM2-218	ENST00000541586	FAM107B	Q9H098	131 aa		27.53	■■■□□ 2
CCM2-218	ENST00000541586	AP1G1	O43747	822 aa		27.52	■■■□□ 2
CCM2-218	ENST00000541586	DNAJC6	O75061	913 aa		27.52	■■■□□ 2
CCM2-218	ENST00000541586	VIM	P08670	466 aa	Known RBP	27.52	■■■□□ 2
CCM2-218	ENST00000541586	DMD	P11532	3685 aa		27.52	■■■□□ 2
CCM2-218	ENST00000541586	FMO4	P31512	558 aa		27.52	■■■□□ 2
CCM2-218	ENST00000541586	CA5A	P35218	305 aa		27.52	■■■□□ 2
CCM2-218	ENST00000541586	IRX4	P78413	519 aa		27.52	■■■□□ 2
CCM2-218	ENST00000541586	ZDHHC20	Q5W0Z9	365 aa		27.52	■■■□□ 2
CCM2-218	ENST00000541586	CERS6	Q6ZMG9	384 aa		27.52	■■■□□ 2
CCM2-218	ENST00000541586	LRRC34	Q8IZ02	419 aa		27.52	■■■□□ 2
CCM2-218	ENST00000541586	CENPL	Q8N0S6	344 aa	Predicted RBP	27.52	■■■□□ 2
CCM2-218	ENST00000541586	GAB3	Q8WWW8	586 aa		27.52	■■■□□ 2
CCM2-218	ENST00000541586	NELL1	Q92832	810 aa		27.52	■■■□□ 2
CCM2-218	ENST00000541586	KLK6	Q92876	244 aa		27.52	■■■□□ 2
CCM2-218	ENST00000541586	PLEKHG4B	Q96PX9	1271 aa		27.52	■■■□□ 2
CCM2-218	ENST00000541586	CCT8L2	Q96SF2	557 aa		27.52	■■■□□ 2
CCM2-218	ENST00000541586	PKD2L2	Q9NZM6	624 aa		27.52	■■■□□ 2
CCM2-218	ENST00000541586		A0A087X1B8	175 aa		27.51	■■□□□ 1.99
CCM2-218	ENST00000541586	MSANTD3-TMEFF1	A0A0A6YYJ0	341 aa		27.51	■■□□□ 1.99
CCM2-218	ENST00000541586	TRBV5-4	A0A0C4DH59	114 aa		27.51	■■□□□ 1.99
CCM2-218	ENST00000541586	TSPAN6	O43657	245 aa		27.51	■■□□□ 1.99
CCM2-218	ENST00000541586	RNGTT	O60942	597 aa	Known RBP	27.51	■■□□□ 1.99
CCM2-218	ENST00000541586	PROC	P04070	461 aa		27.51	■■□□□ 1.99

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