RNA–Protein interactions for RNA: ENST00000533209.5

SSBP3-214, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 4

Gene SSBP3, Length 552 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-214ENST00000533209 CDKN1CP49918 316 aaPredicted RBP11.85□□□□□ -0.51
SSBP3-214ENST00000533209 CTBSQ01459 385 aa11.85□□□□□ -0.51
SSBP3-214ENST00000533209 TMEM115Q12893 351 aaPredicted RBP11.85□□□□□ -0.51
SSBP3-214ENST00000533209 ILF3Q12906 894 aaKnown RBP eCLIP11.85□□□□□ -0.51
SSBP3-214ENST00000533209 WHAMMP3Q1A5X7 153 aa11.85□□□□□ -0.51
SSBP3-214ENST00000533209 GPR33Q49SQ1 333 aa11.85□□□□□ -0.51
SSBP3-214ENST00000533209 IZUMO3Q5VZ72 239 aa11.85□□□□□ -0.51
SSBP3-214ENST00000533209 LVRNQ6Q4G3 990 aa11.85□□□□□ -0.51
SSBP3-214ENST00000533209 NLRP9Q7RTR0 991 aa11.85□□□□□ -0.51
SSBP3-214ENST00000533209 SNX20Q7Z614 316 aa11.85□□□□□ -0.51
SSBP3-214ENST00000533209 TAF8Q7Z7C8 310 aa11.85□□□□□ -0.51
SSBP3-214ENST00000533209 GKN2Q86XP6 184 aa11.85□□□□□ -0.51
SSBP3-214ENST00000533209 FAM181AQ8N9Y4 354 aa11.85□□□□□ -0.51
SSBP3-214ENST00000533209 PPHLN1Q8NEY8 458 aaKnown RBP11.85□□□□□ -0.51
SSBP3-214ENST00000533209 GDAP1Q8TB36 358 aa11.85□□□□□ -0.51
SSBP3-214ENST00000533209 PEX13Q92968 403 aa11.85□□□□□ -0.51
SSBP3-214ENST00000533209 APOLD1Q96LR9 279 aa11.85□□□□□ -0.51
SSBP3-214ENST00000533209 SERPINB12Q96P63 405 aa11.85□□□□□ -0.51
SSBP3-214ENST00000533209 DUSP23Q9BVJ7 150 aa11.85□□□□□ -0.51
SSBP3-214ENST00000533209 KIFC1Q9BW19 673 aa11.85□□□□□ -0.51
SSBP3-214ENST00000533209 XAB2Q9HCS7 855 aaKnown RBP11.85□□□□□ -0.51
SSBP3-214ENST00000533209 TOR4AQ9NXH8 423 aa11.85□□□□□ -0.51
SSBP3-214ENST00000533209 SLC30A1Q9Y6M5 507 aa11.85□□□□□ -0.51
SSBP3-214ENST00000533209 U3KQA8 63 aa11.85□□□□□ -0.51
SSBP3-214ENST00000533209 LRP4O75096 1905 aa11.85□□□□□ -0.51
SSBP3-214ENST00000533209 MYLKQ15746 1914 aa11.84□□□□□ -0.51
SSBP3-214ENST00000533209 TDRD6O60522 2096 aaKnown RBP11.84□□□□□ -0.51
SSBP3-214ENST00000533209 CCDC162PA2VCL2 907 aa11.84□□□□□ -0.51
SSBP3-214ENST00000533209 OR51F1A6NGY5 319 aa11.84□□□□□ -0.51
SSBP3-214ENST00000533209 GRID2O43424 1007 aa11.84□□□□□ -0.51
SSBP3-214ENST00000533209 RAD51CO43502 376 aa11.84□□□□□ -0.51
SSBP3-214ENST00000533209 PRSS56P0CW18 603 aa11.84□□□□□ -0.51
SSBP3-214ENST00000533209 MYF5P13349 255 aa11.84□□□□□ -0.51
SSBP3-214ENST00000533209 AK4P27144 223 aaPredicted RBP11.84□□□□□ -0.51
SSBP3-214ENST00000533209 FOXN2P32314 431 aa11.84□□□□□ -0.51
SSBP3-214ENST00000533209 SIM1P81133 766 aaPredicted RBP11.84□□□□□ -0.51
SSBP3-214ENST00000533209 MRPS25P82663 173 aaKnown RBP11.84□□□□□ -0.51
SSBP3-214ENST00000533209 B4GALNT1Q00973 533 aa11.84□□□□□ -0.51
SSBP3-214ENST00000533209 CACNG1Q06432 222 aa11.84□□□□□ -0.51
SSBP3-214ENST00000533209 CKAP4Q07065 602 aaKnown RBP11.84□□□□□ -0.51
SSBP3-214ENST00000533209 DNAJC3Q13217 504 aa11.84□□□□□ -0.51
SSBP3-214ENST00000533209 ZRANB3Q5FWF4 1079 aa11.84□□□□□ -0.51
SSBP3-214ENST00000533209 C6orf132Q5T0Z8 1188 aa11.84□□□□□ -0.51
SSBP3-214ENST00000533209 ZCCHC8Q6NZY4 707 aaKnown RBP11.84□□□□□ -0.51
SSBP3-214ENST00000533209 PCGF5Q86SE9 256 aa11.84□□□□□ -0.51
SSBP3-214ENST00000533209 HOOK3Q86VS8 718 aa11.84□□□□□ -0.51
SSBP3-214ENST00000533209 ZNF547Q8IVP9 402 aa11.84□□□□□ -0.51
SSBP3-214ENST00000533209 SLC35F3Q8IY50 421 aa11.84□□□□□ -0.51
SSBP3-214ENST00000533209 PIANPQ8IYJ0 282 aa11.84□□□□□ -0.51
SSBP3-214ENST00000533209 AGGF1Q8N302 714 aaeCLIP11.84□□□□□ -0.512e-6■□□□□ 9.7
SSBP3-214ENST00000533209 NXPE1Q8N323 547 aa11.84□□□□□ -0.51
SSBP3-214ENST00000533209 MPP5Q8N3R9 675 aa11.84□□□□□ -0.51
SSBP3-214ENST00000533209 RASGEF1AQ8N9B8 481 aa11.84□□□□□ -0.51
SSBP3-214ENST00000533209 FAM46DQ8NEK8 389 aa11.84□□□□□ -0.51
SSBP3-214ENST00000533209 SCG3Q8WXD2 468 aaKnown RBP11.84□□□□□ -0.51
SSBP3-214ENST00000533209 HDAC10Q969S8 669 aa11.84□□□□□ -0.51
SSBP3-214ENST00000533209 ULK4Q96C45 1275 aa11.84□□□□□ -0.51
SSBP3-214ENST00000533209 CCDC97Q96F63 343 aaPredicted RBP11.84□□□□□ -0.51
SSBP3-214ENST00000533209 BOCQ9BWV1 1114 aa11.84□□□□□ -0.51
SSBP3-214ENST00000533209 GSDMCQ9BYG8 508 aa11.84□□□□□ -0.51
SSBP3-214ENST00000533209 FAM96AQ9H5X1 160 aa11.84□□□□□ -0.51
SSBP3-214ENST00000533209 MRM3Q9HC36 420 aaKnown RBP11.84□□□□□ -0.51
SSBP3-214ENST00000533209 TREX1Q9NSU2 369 aa11.84□□□□□ -0.51
SSBP3-214ENST00000533209 SPATS2LQ9NUQ6 558 aaKnown RBP11.84□□□□□ -0.51
SSBP3-214ENST00000533209 CRLS1Q9UJA2 301 aa11.84□□□□□ -0.51
SSBP3-214ENST00000533209 SOX13Q9UN79 622 aa11.84□□□□□ -0.51
SSBP3-214ENST00000533209 GPR34Q9UPC5 381 aa11.84□□□□□ -0.51
SSBP3-214ENST00000533209 DOLKQ9UPQ8 538 aa11.84□□□□□ -0.51
SSBP3-214ENST00000533209 MRFAP1Q9Y605 127 aa11.84□□□□□ -0.51
SSBP3-214ENST00000533209 COL5A1P20908 1838 aaPredicted RBP11.83□□□□□ -0.51
SSBP3-214ENST00000533209 IGLV3-16A0A075B6K0 115 aa11.83□□□□□ -0.52
SSBP3-214ENST00000533209 FAM187AA6NFU0 413 aa11.83□□□□□ -0.52
SSBP3-214ENST00000533209 SDR42E2A6NKP2 422 aa11.83□□□□□ -0.52
SSBP3-214ENST00000533209 EFCAB8A8MWE9 144 aa11.83□□□□□ -0.52
SSBP3-214ENST00000533209 TP73O15350 636 aa11.83□□□□□ -0.52
SSBP3-214ENST00000533209 DKK1O94907 266 aa11.83□□□□□ -0.52
SSBP3-214ENST00000533209 SEC31AO94979 1220 aaKnown RBP11.83□□□□□ -0.52
SSBP3-214ENST00000533209 GOT2P00505 430 aaKnown RBP11.83□□□□□ -0.52
SSBP3-214ENST00000533209 FTH1P19P0C7X4 201 aa11.83□□□□□ -0.52
SSBP3-214ENST00000533209 ACP5P13686 325 aa11.83□□□□□ -0.52
SSBP3-214ENST00000533209 CKMT2P17540 419 aa11.83□□□□□ -0.52
SSBP3-214ENST00000533209 MSH3P20585 1137 aa11.83□□□□□ -0.52
SSBP3-214ENST00000533209 KCNA4P22459 653 aa11.83□□□□□ -0.52
SSBP3-214ENST00000533209 NMBRP28336 390 aa11.83□□□□□ -0.52
SSBP3-214ENST00000533209 RPL21P46778 160 aaKnown RBP11.83□□□□□ -0.52
SSBP3-214ENST00000533209 ACADVLP49748 655 aa11.83□□□□□ -0.52
SSBP3-214ENST00000533209 CTSCP53634 463 aa11.83□□□□□ -0.52
SSBP3-214ENST00000533209 LRP8Q14114 963 aa11.83□□□□□ -0.52
SSBP3-214ENST00000533209 ARMC3Q5W041 872 aa11.83□□□□□ -0.52
SSBP3-214ENST00000533209 HIBCHQ6NVY1 386 aaPredicted RBP11.83□□□□□ -0.52
SSBP3-214ENST00000533209 OGFOD3Q6PK18 319 aa11.83□□□□□ -0.52
SSBP3-214ENST00000533209 SLC30A9Q6PML9 568 aa11.83□□□□□ -0.52
SSBP3-214ENST00000533209 AFTPHQ6ULP2 937 aa11.83□□□□□ -0.52
SSBP3-214ENST00000533209 CRTC3Q6UUV7 619 aa11.83□□□□□ -0.52
SSBP3-214ENST00000533209 CES3Q6UWW8 571 aa11.83□□□□□ -0.52
SSBP3-214ENST00000533209 CHST15Q7LFX5 561 aaPredicted RBP11.83□□□□□ -0.52
SSBP3-214ENST00000533209 TAS2R42Q7RTR8 314 aa11.83□□□□□ -0.52
SSBP3-214ENST00000533209 MAATS1Q7Z4T9 603 aa11.83□□□□□ -0.52
SSBP3-214ENST00000533209 C11orf96Q7Z7L8 435 aa11.83□□□□□ -0.52
SSBP3-214ENST00000533209 SLCO6A1Q86UG4 719 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms