RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 GZMAP12544 262 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 HNF4AP41235 474 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 NPY4RP50391 375 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 GPR143P51810 404 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 HSF1Q00613 529 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 CFHR1Q03591 330 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 UBXN1Q04323 297 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 YWHAHQ04917 246 aaPredicted RBP3.3□□□□□ -1.88
CD44-229ENST00000528672 SCN1BQ07699 218 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 MRPL28Q13084 256 aaKnown RBP3.3□□□□□ -1.88
CD44-229ENST00000528672 KRT33BQ14525 404 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 TAF7Q15545 349 aaPredicted RBP3.3□□□□□ -1.88
CD44-229ENST00000528672 CBWD6Q4V339 395 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 EARS2Q5JPH6 523 aaKnown RBP3.3□□□□□ -1.88
CD44-229ENST00000528672 CBWD3Q5JTY5 395 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 C6orf163Q5TEZ5 329 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 DHRS7BQ6IAN0 325 aaPredicted RBP3.3□□□□□ -1.88
CD44-229ENST00000528672 SLC18B1Q6NT16 456 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 ABRAXAS1Q6UWZ7 409 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 PACS1Q6VY07 963 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 PIWIL3Q7Z3Z3 882 aaKnown RBP3.3□□□□□ -1.88
CD44-229ENST00000528672 TSPAN33Q86UF1 283 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 SLC25A41Q8N5S1 370 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 HORMAD2Q8N7B1 307 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 LRRC57Q8N9N7 239 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 IQUBQ8NA54 791 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 CAMKVQ8NCB2 501 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 SPATA18Q8TC71 538 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 KCNE4Q8WWG9 221 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 ZNF333Q96JL9 665 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 PPP1R13BQ96KQ4 1090 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 FERMT1Q9BQL6 677 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 PCGF1Q9BSM1 259 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 GPR88Q9GZN0 384 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 LHPPQ9H008 270 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 NACA2Q9H009 215 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 GOLPH3LQ9H4A5 285 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 FANCFQ9NPI8 374 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 GPR108Q9NPR9 543 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 RNF146Q9NTX7 359 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 OLAHQ9NV23 265 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 EXOC1Q9NV70 894 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 MTMR10Q9NXD2 777 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 ANKRD10Q9NXR5 420 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 QPCTLQ9NXS2 382 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 COQ3Q9NZJ6 369 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 DNAJB9Q9UBS3 223 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 DDX25Q9UHL0 483 aaKnown RBP3.3□□□□□ -1.88
CD44-229ENST00000528672 HACL1Q9UJ83 578 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 FBXL5Q9UKA1 691 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 FBXW11Q9UKB1 542 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 BLOC1S6Q9UL45 172 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 BARX2Q9UMQ3 279 aaPredicted RBP3.3□□□□□ -1.88
CD44-229ENST00000528672 COG5Q9UP83 839 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 ATP6V0A2Q9Y487 856 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 SLC4A4Q9Y6R1 1079 aa3.3□□□□□ -1.88
CD44-229ENST00000528672 EIF4G1Q04637 1599 aaKnown RBP3.29□□□□□ -1.88
CD44-229ENST00000528672 BRD4O60885 1362 aaPredicted RBP3.29□□□□□ -1.88
CD44-229ENST00000528672 RNF123Q5XPI4 1314 aa3.29□□□□□ -1.88
CD44-229ENST00000528672 ZNF335Q9H4Z2 1342 aaPredicted RBP3.29□□□□□ -1.88
CD44-229ENST00000528672 A0A0U1RQK1 487 aa3.29□□□□□ -1.88
CD44-229ENST00000528672 ZNF320A2RRD8 509 aa3.29□□□□□ -1.88
CD44-229ENST00000528672 TMEM202A6NGA9 273 aa3.29□□□□□ -1.88
CD44-229ENST00000528672 MAGEB17A8MXT2 336 aa3.29□□□□□ -1.88
CD44-229ENST00000528672 TULP2O00295 520 aa3.29□□□□□ -1.88
CD44-229ENST00000528672 RTCAO00442 366 aaKnown RBP3.29□□□□□ -1.88
CD44-229ENST00000528672 PSMD14O00487 310 aa3.29□□□□□ -1.88
CD44-229ENST00000528672 SPRY1O43609 319 aaPredicted RBP3.29□□□□□ -1.88
CD44-229ENST00000528672 STX6O43752 255 aa3.29□□□□□ -1.88
CD44-229ENST00000528672 FMO6PO60774 539 aa3.29□□□□□ -1.88
CD44-229ENST00000528672 B3GALNT1O75752 331 aa3.29□□□□□ -1.88
CD44-229ENST00000528672 RGS11O94810 467 aa3.29□□□□□ -1.88
CD44-229ENST00000528672 SLCO2B1O94956 709 aa3.29□□□□□ -1.88
CD44-229ENST00000528672 ZWINTO95229 277 aa3.29□□□□□ -1.88
CD44-229ENST00000528672 APBB3O95704 486 aa3.29□□□□□ -1.88
CD44-229ENST00000528672 PENKP01210 267 aaPredicted RBP3.29□□□□□ -1.88
CD44-229ENST00000528672 SLC4A1P02730 911 aa3.29□□□□□ -1.88
CD44-229ENST00000528672 MMP3P08254 477 aa3.29□□□□□ -1.88
CD44-229ENST00000528672 TSPY4P0CV99 314 aa3.29□□□□□ -1.88
CD44-229ENST00000528672 TSPY10P0CW01 314 aa3.29□□□□□ -1.88
CD44-229ENST00000528672 CBSLP0DN79 551 aa3.29□□□□□ -1.88
CD44-229ENST00000528672 ENO3P13929 434 aaPredicted RBP3.29□□□□□ -1.88
CD44-229ENST00000528672 RPS2P15880 293 aaKnown RBP3.29□□□□□ -1.88
CD44-229ENST00000528672 STMN1P16949 149 aa3.29□□□□□ -1.88
CD44-229ENST00000528672 TCEA1P23193 301 aaKnown RBP3.29□□□□□ -1.88
CD44-229ENST00000528672 HSPA4P34932 840 aa3.29□□□□□ -1.88
CD44-229ENST00000528672 CBSP35520 551 aa3.29□□□□□ -1.88
CD44-229ENST00000528672 CD86P42081 329 aa3.29□□□□□ -1.88
CD44-229ENST00000528672 AMPHP49418 695 aa3.29□□□□□ -1.88
CD44-229ENST00000528672 BMXP51813 675 aa3.29□□□□□ -1.88
CD44-229ENST00000528672 CAPZA1P52907 286 aa3.29□□□□□ -1.88
CD44-229ENST00000528672 SRSF4Q08170 494 aaKnown RBP3.29□□□□□ -1.88
CD44-229ENST00000528672 STIM1Q13586 685 aa3.29□□□□□ -1.88
CD44-229ENST00000528672 KLF9Q13886 244 aaPredicted RBP3.29□□□□□ -1.88
CD44-229ENST00000528672 NFE2L1Q14494 772 aa3.29□□□□□ -1.88
CD44-229ENST00000528672 LPIN1Q14693 890 aa3.29□□□□□ -1.88
CD44-229ENST00000528672 DAZAP2Q15038 168 aaPredicted RBP3.29□□□□□ -1.88
CD44-229ENST00000528672 PNLIPRP3Q17RR3 467 aa3.29□□□□□ -1.88
CD44-229ENST00000528672 ZNF674Q2M3X9 581 aa3.29□□□□□ -1.88
CD44-229ENST00000528672 C2orf68Q2NKX9 166 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms