RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 TMEM35AQ53FP2 167 aa4.52□□□□□ -1.69
CD44-223ENST00000526553 ZNF805Q5CZA5 627 aa4.52□□□□□ -1.69
CD44-223ENST00000526553 GFI1BQ5VTD9 330 aa4.52□□□□□ -1.69
CD44-223ENST00000526553 TMPRSS12Q86WS5 348 aa4.52□□□□□ -1.69
CD44-223ENST00000526553 OR13A1Q8NGR1 328 aa4.52□□□□□ -1.69
CD44-223ENST00000526553 OR1J2Q8NGS2 313 aa4.52□□□□□ -1.69
CD44-223ENST00000526553 HMGCLL1Q8TB92 370 aa4.52□□□□□ -1.69
CD44-223ENST00000526553 DIAPH3Q9NSV4 1193 aa4.52□□□□□ -1.69
CD44-223ENST00000526553 ZFP57Q9NU63 452 aa4.52□□□□□ -1.69
CD44-223ENST00000526553 NSMCE4AQ9NXX6 385 aa4.52□□□□□ -1.69
CD44-223ENST00000526553 ORC3Q9UBD5 711 aaPredicted RBP4.52□□□□□ -1.69
CD44-223ENST00000526553 COPG2Q9UBF2 871 aa4.52□□□□□ -1.69
CD44-223ENST00000526553 POLG2Q9UHN1 485 aa4.52□□□□□ -1.69
CD44-223ENST00000526553 TTLL3Q9Y4R7 772 aa4.52□□□□□ -1.69
CD44-223ENST00000526553 PIAS3Q9Y6X2 628 aa4.52□□□□□ -1.69
CD44-223ENST00000526553 TNFSF12-TNFSF13A0A0A6YY99 330 aa4.51□□□□□ -1.69
CD44-223ENST00000526553 LIPT2A6NK58 231 aa4.51□□□□□ -1.69
CD44-223ENST00000526553 CAPN9O14815 690 aa4.51□□□□□ -1.69
CD44-223ENST00000526553 ATP2A1O14983 1001 aa4.51□□□□□ -1.69
CD44-223ENST00000526553 ANKRD28O15084 1053 aa4.51□□□□□ -1.69
CD44-223ENST00000526553 GRID2O43424 1007 aa4.51□□□□□ -1.69
CD44-223ENST00000526553 USO1O60763 962 aaKnown RBP4.51□□□□□ -1.69
CD44-223ENST00000526553 SCGB1D1O95968 90 aa4.51□□□□□ -1.69
CD44-223ENST00000526553 MMP14P50281 582 aa4.51□□□□□ -1.69
CD44-223ENST00000526553 TERF1P54274 439 aa4.51□□□□□ -1.69
CD44-223ENST00000526553 TAS2R40P59535 323 aa4.51□□□□□ -1.69
CD44-223ENST00000526553 PHEXP78562 749 aa4.51□□□□□ -1.69
CD44-223ENST00000526553 GAGE5Q13069 117 aa4.51□□□□□ -1.69
CD44-223ENST00000526553 GAGE6Q13070 117 aa4.51□□□□□ -1.69
CD44-223ENST00000526553 KRTCAP3Q53RY4 240 aa4.51□□□□□ -1.69
CD44-223ENST00000526553 C19orf48Q6RUI8 117 aa4.51□□□□□ -1.69
CD44-223ENST00000526553 SARM1Q6SZW1 724 aa4.51□□□□□ -1.69
CD44-223ENST00000526553 GLDNQ6ZMI3 551 aaPredicted RBP4.51□□□□□ -1.69
CD44-223ENST00000526553 DMBX1Q8NFW5 382 aa4.51□□□□□ -1.69
CD44-223ENST00000526553 C1orf74Q96LT6 269 aa4.51□□□□□ -1.69
CD44-223ENST00000526553 CHCHD6Q9BRQ6 235 aa4.51□□□□□ -1.69
CD44-223ENST00000526553 RRP7BPQ9NSQ0 103 aa4.51□□□□□ -1.69
CD44-223ENST00000526553 CLIC5Q9NZA1 410 aa4.51□□□□□ -1.69
CD44-223ENST00000526553 RPS6KL1Q9Y6S9 549 aa4.51□□□□□ -1.69
CD44-223ENST00000526553 ZCWPW2A0A1B0GU75 182 aa4.5□□□□□ -1.69
CD44-223ENST00000526553 A0A1W2PP11 408 aa4.5□□□□□ -1.69
CD44-223ENST00000526553 FSD2A1L4K1 749 aa4.5□□□□□ -1.69
CD44-223ENST00000526553 CTAGE9A4FU28 777 aa4.5□□□□□ -1.69
CD44-223ENST00000526553 PI4KAP2A4QPH2 592 aa4.5□□□□□ -1.69
CD44-223ENST00000526553 EIF4E1BA6NMX2 242 aaKnown RBP4.5□□□□□ -1.69
CD44-223ENST00000526553 MAP2K7O14733 419 aa4.5□□□□□ -1.69
CD44-223ENST00000526553 FIBPO43427 364 aa4.5□□□□□ -1.69
CD44-223ENST00000526553 PLGP00747 810 aaPredicted RBP4.5□□□□□ -1.69
CD44-223ENST00000526553 CTAGE8P0CG41 777 aa4.5□□□□□ -1.69
CD44-223ENST00000526553 LAMP2P13473 410 aa4.5□□□□□ -1.69
CD44-223ENST00000526553 NFKBIAP25963 317 aa4.5□□□□□ -1.69
CD44-223ENST00000526553 HOXA1P49639 335 aaPredicted RBP4.5□□□□□ -1.69
CD44-223ENST00000526553 ARF3P61204 181 aaPredicted RBP4.5□□□□□ -1.69
CD44-223ENST00000526553 ARF1P84077 181 aaKnown RBP4.5□□□□□ -1.69
CD44-223ENST00000526553 PLIN5Q00G26 463 aa4.5□□□□□ -1.69
CD44-223ENST00000526553 RUNX1T1Q06455 604 aa4.5□□□□□ -1.69
CD44-223ENST00000526553 LRMPQ12912 555 aa4.5□□□□□ -1.69
CD44-223ENST00000526553 KRT32Q14532 448 aa4.5□□□□□ -1.69
CD44-223ENST00000526553 MED22Q15528 200 aa4.5□□□□□ -1.69
CD44-223ENST00000526553 NAB2Q15742 525 aa4.5□□□□□ -1.69
CD44-223ENST00000526553 PDSS1Q5T2R2 415 aa4.5□□□□□ -1.69
CD44-223ENST00000526553 STXBP5Q5T5C0 1151 aa4.5□□□□□ -1.69
CD44-223ENST00000526553 HAUS3Q68CZ6 603 aa4.5□□□□□ -1.69
CD44-223ENST00000526553 KCTD8Q6ZWB6 473 aa4.5□□□□□ -1.69
CD44-223ENST00000526553 TRMT1LQ7Z2T5 733 aaKnown RBP4.5□□□□□ -1.69
CD44-223ENST00000526553 TSPAN33Q86UF1 283 aa4.5□□□□□ -1.69
CD44-223ENST00000526553 MAP7D3Q8IWC1 876 aa4.5□□□□□ -1.69
CD44-223ENST00000526553 CTAGE4Q8IX94 777 aa4.5□□□□□ -1.69
CD44-223ENST00000526553 CIARTQ8N365 385 aaPredicted RBP4.5□□□□□ -1.69
CD44-223ENST00000526553 SLC44A1Q8WWI5 657 aa4.5□□□□□ -1.69
CD44-223ENST00000526553 EGLN2Q96KS0 407 aa4.5□□□□□ -1.69
CD44-223ENST00000526553 NUDT16L1Q9BRJ7 211 aaKnown RBP4.5□□□□□ -1.69
CD44-223ENST00000526553 TRMT61BQ9BVS5 477 aaKnown RBP4.5□□□□□ -1.69
CD44-223ENST00000526553 PIGMQ9H3S5 423 aa4.5□□□□□ -1.69
CD44-223ENST00000526553 ZNF334Q9HCZ1 680 aaPredicted RBP4.5□□□□□ -1.69
CD44-223ENST00000526553 KRT84Q9NSB2 600 aa4.5□□□□□ -1.69
CD44-223ENST00000526553 TAAR2Q9P1P5 351 aa4.5□□□□□ -1.69
CD44-223ENST00000526553 MTMR6Q9Y217 621 aa4.5□□□□□ -1.69
CD44-223ENST00000526553 TMEM184BQ9Y519 407 aaPredicted RBP4.5□□□□□ -1.69
CD44-223ENST00000526553 GREB1LQ9C091 1923 aaPredicted RBP4.49□□□□□ -1.69
CD44-223ENST00000526553 ICAM1P05362 532 aa4.49□□□□□ -1.69
CD44-223ENST00000526553 ZNF23P17027 643 aa4.49□□□□□ -1.69
CD44-223ENST00000526553 PIK3CAP42336 1068 aa4.49□□□□□ -1.69
CD44-223ENST00000526553 NUCB1Q02818 461 aa4.49□□□□□ -1.69
CD44-223ENST00000526553 SREBF2Q12772 1141 aa4.49□□□□□ -1.69
CD44-223ENST00000526553 PCGF3Q3KNV8 242 aa4.49□□□□□ -1.69
CD44-223ENST00000526553 LRIF1Q5T3J3 769 aa4.49□□□□□ -1.69
CD44-223ENST00000526553 NSUN5P2Q63ZY6 315 aa4.49□□□□□ -1.69
CD44-223ENST00000526553 OR7E24Q6IFN5 339 aa4.49□□□□□ -1.69
CD44-223ENST00000526553 ZNF852Q6ZMS4 543 aa4.49□□□□□ -1.69
CD44-223ENST00000526553 PLEKHM3Q6ZWE6 761 aa4.49□□□□□ -1.69
CD44-223ENST00000526553 MARK2Q7KZI7 788 aaKnown RBP4.49□□□□□ -1.69
CD44-223ENST00000526553 ATG9AQ7Z3C6 839 aa4.49□□□□□ -1.69
CD44-223ENST00000526553 SDCCAG8Q86SQ7 713 aaPredicted RBP4.49□□□□□ -1.69
CD44-223ENST00000526553 NGEFQ8N5V2 710 aa4.49□□□□□ -1.69
CD44-223ENST00000526553 ANKRD52Q8NB46 1076 aa4.49□□□□□ -1.69
CD44-223ENST00000526553 TRPC4APQ8TEL6 797 aa4.49□□□□□ -1.69
CD44-223ENST00000526553 TMEM255BQ8WV15 326 aa4.49□□□□□ -1.69
CD44-223ENST00000526553 POMGNT1Q8WZA1 660 aa4.49□□□□□ -1.69
CD44-223ENST00000526553 ZNF583Q96ND8 569 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms