RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 SHOC2Q9UQ13 582 aa10.07□□□□□ -0.8
VPS28-204ENST00000526054 ZNF106Q9H2Y7 1883 aaKnown RBP10.06□□□□□ -0.8
VPS28-204ENST00000526054 ZNF462Q96JM2 2506 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 CCDC188H7C350 402 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 K7ENP7 123 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 CACNB4O00305 520 aaPredicted RBP10.06□□□□□ -0.8
VPS28-204ENST00000526054 FANCGO15287 622 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 ECEL1O95672 775 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 TNFP01375 233 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 KRT14P02533 472 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 ZSCAN5DPP0CG00 497 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 TEAD1P28347 426 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 RPL22P35268 128 aaKnown RBP10.06□□□□□ -0.8
VPS28-204ENST00000526054 INHBCP55103 352 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 KIAA1024LP59773 190 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 BASP1P80723 227 aaKnown RBP10.06□□□□□ -0.8
VPS28-204ENST00000526054 PTSQ03393 145 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 CLN3Q13286 438 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 SEMA5AQ13591 1074 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 LY6DQ14210 128 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 SPARCL1Q14515 664 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 PTPRRQ15256 657 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 KIAA1614Q5VZ46 1190 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 KCTD16Q68DU8 428 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 KCTD11Q693B1 232 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 RAET1GQ6H3X3 334 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 TTC27Q6P3X3 843 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 INO80CQ6PI98 192 aaPredicted RBP10.06□□□□□ -0.8
VPS28-204ENST00000526054 RANBP10Q6VN20 620 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 PPP1R21Q6ZMI0 780 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 Q6ZVL8 140 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 ZNF765Q7L2R6 523 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 RAB11FIP2Q7L804 512 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 GLT6D1Q7Z4J2 308 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 TECPR1Q7Z6L1 1165 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 PRUNE1Q86TP1 453 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 JAMLQ86YT9 394 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 CREG2Q8IUH2 290 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 CBARPQ8N350 705 aaPredicted RBP10.06□□□□□ -0.8
VPS28-204ENST00000526054 GLIS1Q8NBF1 620 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 OR6C4Q8NGE1 309 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 AP2M1Q96CW1 435 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 TMEM74Q96NL1 305 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 APOL2Q9BQE5 337 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 FOXP3Q9BZS1 431 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 CDH19Q9H159 772 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 WDR26Q9H7D7 661 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 EIF2B3Q9NR50 452 aaKnown RBP10.06□□□□□ -0.8
VPS28-204ENST00000526054 CD84Q9UIB8 345 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 SSUH2Q9Y2M2 353 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 SPO11Q9Y5K1 396 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 DGKBQ9Y6T7 804 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 COL6A6A6NMZ7 2263 aa10.06□□□□□ -0.8
VPS28-204ENST00000526054 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.05□□□□□ -0.8
VPS28-204ENST00000526054 A0A0U1RQS6 177 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 A0A1W2PQM1 296 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 B4DGG1 531 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 TMX2-CTNND1H3BSU7 103 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 PDE2AO00408 941 aaPredicted RBP10.05□□□□□ -0.8
VPS28-204ENST00000526054 CRTAMO95727 393 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 APRTP07741 180 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 JMJD7P0C870 316 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 KELP23276 732 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 CCKBRP32239 447 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 UGT1A5P35504 534 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 HMGCLP35914 325 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 GPR1P46091 355 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 SPINT3P49223 89 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 VPS41P49754 854 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 DCDC1P59894 354 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 CCL7P80098 99 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 PDE1BQ01064 536 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 DPTQ07507 201 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 CDH17Q12864 832 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 GPS1Q13098 491 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 PPP1R7Q15435 360 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 DNTTIP2Q5QJE6 756 aaKnown RBP10.05□□□□□ -0.8
VPS28-204ENST00000526054 ZDHHC20Q5W0Z9 365 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 PNCKQ6P2M8 343 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 TMC3Q7Z5M5 1100 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 TAF8Q7Z7C8 310 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 NLRP8Q86W28 1048 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 CCNJLQ8IV13 435 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 FBXO39Q8N4B4 442 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 PLA2G15Q8NCC3 412 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 OR56A4Q8NGH8 313 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 OR1E3Q8WZA6 343 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 FUBP1Q96AE4 644 aaKnown RBP10.05□□□□□ -0.8
VPS28-204ENST00000526054 CCNL2Q96S94 520 aaPredicted RBP10.05□□□□□ -0.8
VPS28-204ENST00000526054 SEMA4CQ9C0C4 833 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 DDX47Q9H0S4 455 aaKnown RBP10.05□□□□□ -0.8
VPS28-204ENST00000526054 ABCG8Q9H221 673 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 LRRN3Q9H3W5 708 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 FAM83DQ9H4H8 585 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 ARNT2Q9HBZ2 717 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 FGF22Q9HCT0 170 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 MRPL40Q9NQ50 206 aaKnown RBP10.05□□□□□ -0.8
VPS28-204ENST00000526054 PHPT1Q9NRX4 125 aaPredicted RBP10.05□□□□□ -0.8
VPS28-204ENST00000526054 NFKBIL1Q9UBC1 381 aaPredicted RBP10.05□□□□□ -0.8
VPS28-204ENST00000526054 ATXN7L1Q9ULK2 861 aaPredicted RBP10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms