RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 SDC3O75056 442 aa19.99■□□□□ 0.79
USP53-208ENST00000514305 HOXC4P09017 264 aaPredicted RBP19.99■□□□□ 0.79
USP53-208ENST00000514305 RHOXF2BP0C7M4 288 aa19.99■□□□□ 0.79
USP53-208ENST00000514305 CKMT2P17540 419 aa19.99■□□□□ 0.79
USP53-208ENST00000514305 ITGALP20701 1170 aa19.99■□□□□ 0.79
USP53-208ENST00000514305 MCM3P25205 808 aa19.99■□□□□ 0.79
USP53-208ENST00000514305 MAGEA3P43357 314 aa19.99■□□□□ 0.79
USP53-208ENST00000514305 ZNF140P52738 457 aaPredicted RBP19.99■□□□□ 0.79
USP53-208ENST00000514305 THOP1P52888 689 aa19.99■□□□□ 0.79
USP53-208ENST00000514305 HENMT1Q5T8I9 393 aaKnown RBP19.99■□□□□ 0.79
USP53-208ENST00000514305 ADGRD1Q6QNK2 874 aa19.99■□□□□ 0.79
USP53-208ENST00000514305 ABI3BPQ7Z7G0 1075 aa19.99■□□□□ 0.79
USP53-208ENST00000514305 ZNF454Q8N9F8 522 aa19.99■□□□□ 0.79
USP53-208ENST00000514305 IFT81Q8WYA0 676 aa19.99■□□□□ 0.79
USP53-208ENST00000514305 ULK4Q96C45 1275 aa19.99■□□□□ 0.79
USP53-208ENST00000514305 NXPE2Q96DL1 559 aa19.99■□□□□ 0.79
USP53-208ENST00000514305 STAMBPL1Q96FJ0 436 aa19.99■□□□□ 0.79
USP53-208ENST00000514305 KLF6Q99612 283 aaPredicted RBP19.99■□□□□ 0.79
USP53-208ENST00000514305 RHOXF2Q9BQY4 288 aa19.99■□□□□ 0.79
USP53-208ENST00000514305 RIOK2Q9BVS4 552 aaKnown RBP19.99■□□□□ 0.79
USP53-208ENST00000514305 WDR26Q9H7D7 661 aa19.99■□□□□ 0.79
USP53-208ENST00000514305 SYBUQ9NX95 663 aa19.99■□□□□ 0.79
USP53-208ENST00000514305 GRHL1Q9NZI5 618 aa19.99■□□□□ 0.79
USP53-208ENST00000514305 DMGDHQ9UI17 866 aaKnown RBP19.99■□□□□ 0.79
USP53-208ENST00000514305 CD84Q9UIB8 345 aa19.99■□□□□ 0.79
USP53-208ENST00000514305 MYLKQ15746 1914 aa19.99■□□□□ 0.79
USP53-208ENST00000514305 AVILO75366 819 aa19.98■□□□□ 0.79
USP53-208ENST00000514305 TRIM23P36406 574 aa19.98■□□□□ 0.79
USP53-208ENST00000514305 CBLBQ13191 982 aa19.98■□□□□ 0.79
USP53-208ENST00000514305 ILKQ13418 452 aa19.98■□□□□ 0.79
USP53-208ENST00000514305 INPP5AQ14642 412 aa19.98■□□□□ 0.79
USP53-208ENST00000514305 GPR33Q49SQ1 333 aa19.98■□□□□ 0.79
USP53-208ENST00000514305 CCDC38Q502W7 563 aa19.98■□□□□ 0.79
USP53-208ENST00000514305 ADAMTSL4Q6UY14 1074 aa19.98■□□□□ 0.79
USP53-208ENST00000514305 KANSL1Q7Z3B3 1105 aa19.98■□□□□ 0.79
USP53-208ENST00000514305 PTAR1Q7Z6K3 402 aaPredicted RBP19.98■□□□□ 0.79
USP53-208ENST00000514305 EIF1ADQ8N9N8 165 aaKnown RBP19.98■□□□□ 0.79
USP53-208ENST00000514305 GPR26Q8NDV2 337 aa19.98■□□□□ 0.79
USP53-208ENST00000514305 ZNF398Q8TD17 642 aa19.98■□□□□ 0.79
USP53-208ENST00000514305 HEXDCQ8WVB3 486 aa19.98■□□□□ 0.79
USP53-208ENST00000514305 EID2BQ96D98 161 aa19.98■□□□□ 0.79
USP53-208ENST00000514305 CDKN2AIPNLQ96HQ2 116 aa19.98■□□□□ 0.79
USP53-208ENST00000514305 APOOQ9BUR5 198 aa19.98■□□□□ 0.79
USP53-208ENST00000514305 FZD3Q9NPG1 666 aa19.98■□□□□ 0.79
USP53-208ENST00000514305 CHRAC1Q9NRG0 131 aa19.98■□□□□ 0.79
USP53-208ENST00000514305 ARID1BQ8NFD5 2236 aaPredicted RBP19.98■□□□□ 0.79
USP53-208ENST00000514305 ZFYVE26Q68DK2 2539 aa19.98■□□□□ 0.79
USP53-208ENST00000514305 A0A0U1RQS6 177 aa19.97■□□□□ 0.79
USP53-208ENST00000514305 BUD23O43709 281 aaKnown RBP19.97■□□□□ 0.79
USP53-208ENST00000514305 USP1O94782 785 aa19.97■□□□□ 0.79
USP53-208ENST00000514305 TUBBP07437 444 aa19.97■□□□□ 0.79
USP53-208ENST00000514305 GM2AP17900 193 aa19.97■□□□□ 0.79
USP53-208ENST00000514305 PGAM1P18669 254 aa19.97■□□□□ 0.79
USP53-208ENST00000514305 PSMA3P25788 255 aa19.97■□□□□ 0.79
USP53-208ENST00000514305 TMPRSS15P98073 1019 aa19.97■□□□□ 0.79
USP53-208ENST00000514305 DHX9Q08211 1270 aaKnown RBP19.97■□□□□ 0.79
USP53-208ENST00000514305 KCTD19Q17RG1 926 aaPredicted RBP19.97■□□□□ 0.79
USP53-208ENST00000514305 AARS2Q5JTZ9 985 aaKnown RBP19.97■□□□□ 0.79
USP53-208ENST00000514305 LYPLAL1Q5VWZ2 237 aa19.97■□□□□ 0.79
USP53-208ENST00000514305 ALS2CLQ60I27 953 aa19.97■□□□□ 0.79
USP53-208ENST00000514305 AFTPHQ6ULP2 937 aa19.97■□□□□ 0.79
USP53-208ENST00000514305 Q6ZSR6 202 aa19.97■□□□□ 0.79
USP53-208ENST00000514305 OR13C4Q8NGS5 318 aa19.97■□□□□ 0.79
USP53-208ENST00000514305 FBXO25Q8TCJ0 367 aa19.97■□□□□ 0.79
USP53-208ENST00000514305 PYROXD1Q8WU10 500 aa19.97■□□□□ 0.79
USP53-208ENST00000514305 HNRNPLLQ8WVV9 542 aaKnown RBP19.97■□□□□ 0.79
USP53-208ENST00000514305 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP19.97■□□□□ 0.79
USP53-208ENST00000514305 SCAMP4Q969E2 229 aa19.97■□□□□ 0.79
USP53-208ENST00000514305 HIC2Q96JB3 615 aa19.97■□□□□ 0.79
USP53-208ENST00000514305 DNAJC1Q96KC8 554 aaKnown RBP19.97■□□□□ 0.79
USP53-208ENST00000514305 SIGLEC10Q96LC7 697 aa19.97■□□□□ 0.79
USP53-208ENST00000514305 BMFQ96LC9 184 aa19.97■□□□□ 0.79
USP53-208ENST00000514305 EBNA1BP2Q99848 306 aaKnown RBP19.97■□□□□ 0.79
USP53-208ENST00000514305 IL26Q9NPH9 171 aa19.97■□□□□ 0.79
USP53-208ENST00000514305 MBNL1Q9NR56 388 aaKnown RBP19.97■□□□□ 0.79
USP53-208ENST00000514305 LAMA5O15230 3695 aa19.97■□□□□ 0.79
USP53-208ENST00000514305 APC2O95996 2303 aa19.97■□□□□ 0.79
USP53-208ENST00000514305 CACNA1GO43497 2377 aa19.97■□□□□ 0.79
USP53-208ENST00000514305 KNTC1P50748 2209 aa19.96■□□□□ 0.79
USP53-208ENST00000514305 F8W8V4 182 aa19.96■□□□□ 0.79
USP53-208ENST00000514305 RAD51BO15315 384 aa19.96■□□□□ 0.79
USP53-208ENST00000514305 SRP72O76094 671 aaKnown RBP19.96■□□□□ 0.79
USP53-208ENST00000514305 PRAMEF1O95521 474 aa19.96■□□□□ 0.79
USP53-208ENST00000514305 RALBP11234 206 aa19.96■□□□□ 0.79
USP53-208ENST00000514305 IGFALSP35858 605 aa19.96■□□□□ 0.79
USP53-208ENST00000514305 PFN3P60673 137 aa19.96■□□□□ 0.79
USP53-208ENST00000514305 DAB2P98082 770 aa19.96■□□□□ 0.79
USP53-208ENST00000514305 ACVR1Q04771 509 aa19.96■□□□□ 0.79
USP53-208ENST00000514305 PDIA2Q13087 525 aaKnown RBP19.96■□□□□ 0.79
USP53-208ENST00000514305 COL28A1Q2UY09 1125 aa19.96■□□□□ 0.79
USP53-208ENST00000514305 SPANXN3Q5MJ09 141 aa19.96■□□□□ 0.79
USP53-208ENST00000514305 LDLRAP1Q5SW96 308 aa19.96■□□□□ 0.79
USP53-208ENST00000514305 FNBP1LQ5T0N5 605 aa19.96■□□□□ 0.79
USP53-208ENST00000514305 HES3Q5TGS1 186 aa19.96■□□□□ 0.79
USP53-208ENST00000514305 FAM151BQ6UXP7 276 aa19.96■□□□□ 0.79
USP53-208ENST00000514305 GCNT7Q6ZNI0 430 aa19.96■□□□□ 0.79
USP53-208ENST00000514305 SNX20Q7Z614 316 aa19.96■□□□□ 0.79
USP53-208ENST00000514305 PHYKPLQ8IUZ5 450 aa19.96■□□□□ 0.79
USP53-208ENST00000514305 PALM2Q8IXS6 379 aa19.96■□□□□ 0.79
USP53-208ENST00000514305 OR13H1Q8NG92 308 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms