RNA–Protein interactions for RNA: ENST00000512340.5

NR1I3-231, Transcript of nuclear receptor subfamily 1 group I member 3, human

TSL 1 (best)

Gene NR1I3, Length 891 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1I3-231	ENST00000512340	CPED1	A4D0V7	1026 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	FAM187A	A6NFU0	413 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	TMEM202	A6NGA9	273 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	SDR42E2	A6NKP2	422 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	RHPN2P1	A8MT19	583 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	TMX2-CTNND1	H3BSU7	103 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	ZNF185	O15231	689 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	YY2	O15391	372 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	SIGLEC6	O43699	453 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	NUAK1	O60285	661 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	USP12	O75317	370 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	RFPL3	O75679	317 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	SRP72	O76094	671 aa	Known RBP	7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	URI1	O94763	535 aa	Predicted RBP	7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	PROS1	P07225	676 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	FTH1P19	P0C7X4	201 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	CKMT1A	P12532	417 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	TPH1	P17752	444 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	GM2A	P17900	193 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	IDS	P22304	550 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	ACTR1B	P42025	376 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	HAL	P42357	657 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	PPM1F	P49593	454 aa	Predicted RBP	7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	ZNF140	P52738	457 aa	Predicted RBP	7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	SESN2	P58004	480 aa	Predicted RBP	7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	ACTR1A	P61163	376 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	NFATC2	Q13469	925 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	C1orf61	Q13536	156 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	IHH	Q14623	411 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	TRIP13	Q15645	432 aa	Predicted RBP	7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	CHRNA6	Q15825	494 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	INSC	Q1MX18	579 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	PYCR3	Q53H96	274 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	FASTKD1	Q53R41	847 aa	Known RBP	7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	CCDC157	Q569K6	752 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	C6orf132	Q5T0Z8	1188 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	MRNIP	Q6NTE8	343 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	LRRC8B	Q6P9F7	803 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	AFTPH	Q6ULP2	937 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	MARK2	Q7KZI7	788 aa	Known RBP	7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	TRAPPC5	Q8IUR0	188 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	CCNJL	Q8IV13	435 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	KLHL7	Q8IXQ5	586 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	PDIK1L	Q8N165	341 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	MPP5	Q8N3R9	675 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	SLC25A45	Q8N413	288 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	OR6P1	Q8NGX9	317 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	GSDMB	Q8TAX9	411 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	CALML6	Q8TD86	181 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	GPBAR1	Q8TDU6	330 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	PDXP	Q96GD0	296 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	SCARF2	Q96GP6	870 aa	Predicted RBP	7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	COX14	Q96I36	57 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	C16orf45	Q96MC5	204 aa	Predicted RBP	7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	TIMM29	Q9BSF4	260 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	LRRC61	Q9BV99	259 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	LDHAL6B	Q9BYZ2	381 aa	Predicted RBP	7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	RAB17	Q9H0T7	212 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	CASS4	Q9NQ75	786 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	NLE1	Q9NVX2	485 aa	Predicted RBP	7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	PADI4	Q9UM07	663 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	TMEM98	Q9Y2Y6	226 aa		7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	UTP11	Q9Y3A2	253 aa	Known RBP	7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	ARID1B	Q8NFD5	2236 aa	Predicted RBP	7.39	□□□□□ -1.23
NR1I3-231	ENST00000512340	KIR2DS5	A0A0G2JLQ3	304 aa		7.38	□□□□□ -1.23
NR1I3-231	ENST00000512340		A0A0G2JNG1	304 aa		7.38	□□□□□ -1.23
NR1I3-231	ENST00000512340	SPAAR	A0A1B0GVQ0	90 aa		7.38	□□□□□ -1.23
NR1I3-231	ENST00000512340	MROH6	A6NGR9	719 aa		7.38	□□□□□ -1.23
NR1I3-231	ENST00000512340		H7C0S8	307 aa		7.38	□□□□□ -1.23
NR1I3-231	ENST00000512340	KIR2DS3	K7RE56	304 aa		7.38	□□□□□ -1.23
NR1I3-231	ENST00000512340	AURKA	O14965	403 aa		7.38	□□□□□ -1.23
NR1I3-231	ENST00000512340	BUD23	O43709	281 aa	Known RBP	7.38	□□□□□ -1.23
NR1I3-231	ENST00000512340	KDM1A	O60341	852 aa		7.38	□□□□□ -1.23
NR1I3-231	ENST00000512340	CBFA2T3	O75081	653 aa		7.38	□□□□□ -1.23
NR1I3-231	ENST00000512340	AP2A2	O94973	939 aa		7.38	□□□□□ -1.23
NR1I3-231	ENST00000512340	FTH1	P02794	183 aa		7.38	□□□□□ -1.23
NR1I3-231	ENST00000512340	ZSCAN5DP	P0CG00	497 aa		7.38	□□□□□ -1.23
NR1I3-231	ENST00000512340	ACP5	P13686	325 aa		7.38	□□□□□ -1.23
NR1I3-231	ENST00000512340	ETS1	P14921	441 aa		7.38	□□□□□ -1.23
NR1I3-231	ENST00000512340	ZNF7	P17097	686 aa	Predicted RBP	7.38	□□□□□ -1.23
NR1I3-231	ENST00000512340	ACP1	P24666	158 aa		7.38	□□□□□ -1.23
NR1I3-231	ENST00000512340	MC4R	P32245	332 aa		7.38	□□□□□ -1.23
NR1I3-231	ENST00000512340	MAGEA6	P43360	314 aa		7.38	□□□□□ -1.23
NR1I3-231	ENST00000512340	TTPA	P49638	278 aa		7.38	□□□□□ -1.23
NR1I3-231	ENST00000512340	CLCNKA	P51800	687 aa		7.38	□□□□□ -1.23
NR1I3-231	ENST00000512340	TMPRSS15	P98073	1019 aa		7.38	□□□□□ -1.23
NR1I3-231	ENST00000512340	CTBS	Q01459	385 aa		7.38	□□□□□ -1.23
NR1I3-231	ENST00000512340	PLOD1	Q02809	727 aa	Predicted RBP	7.38	□□□□□ -1.23
NR1I3-231	ENST00000512340	GABPB1	Q06547	395 aa	Predicted RBP	7.38	□□□□□ -1.23
NR1I3-231	ENST00000512340	TMEM115	Q12893	351 aa	Predicted RBP	7.38	□□□□□ -1.23
NR1I3-231	ENST00000512340	ILF2	Q12905	390 aa	Known RBP	7.38	□□□□□ -1.23
NR1I3-231	ENST00000512340	PTK6	Q13882	451 aa		7.38	□□□□□ -1.23
NR1I3-231	ENST00000512340	ITIH4	Q14624	930 aa		7.38	□□□□□ -1.23
NR1I3-231	ENST00000512340	KIR2DS5	Q14953	304 aa		7.38	□□□□□ -1.23
NR1I3-231	ENST00000512340	MORF4L2	Q15014	288 aa		7.38	□□□□□ -1.23
NR1I3-231	ENST00000512340	PTPRR	Q15256	657 aa		7.38	□□□□□ -1.23
NR1I3-231	ENST00000512340	SHB	Q15464	509 aa		7.38	□□□□□ -1.23
NR1I3-231	ENST00000512340	CLPP	Q16740	277 aa	Predicted RBP	7.38	□□□□□ -1.23
NR1I3-231	ENST00000512340	WHAMMP3	Q1A5X7	153 aa		7.38	□□□□□ -1.23
NR1I3-231	ENST00000512340	ATP13A5	Q4VNC0	1218 aa		7.38	□□□□□ -1.23

Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms