RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 KCNS3Q9BQ31 491 aa11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 AMBRA1Q9C0C7 1298 aa11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 CMTM6Q9NX76 183 aa11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 SLC39A10Q9ULF5 831 aa11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 OGTO15294 1046 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 DNAJB5O75953 348 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 RECQL5O94762 991 aaPredicted RBP11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 VNN1O95497 513 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 PRKACGP22612 351 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 MIPP30301 263 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 MADCAM1Q13477 382 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 IRF3Q14653 427 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 GRM3Q14832 879 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 UGP2Q16851 508 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 SETMARQ53H47 684 aaPredicted RBP11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 RABL3Q5HYI8 236 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 LAIR2Q6ISS4 152 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 FAM45BPQ6NSW5 357 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 TMEM81Q6P7N7 255 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 DPP8Q6V1X1 898 aaPredicted RBP11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 OTOP1Q7RTM1 612 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 NLRP8Q86W28 1048 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 ZDHHC13Q8IUH4 622 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 TMEM199Q8N511 208 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 OR7D4Q8NG98 312 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 OR10T2Q8NGX3 314 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 FAM45AQ8TCE6 357 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 SPPL2BQ8TCT7 592 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 FTHL17Q9BXU8 183 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 ELOVL6Q9H5J4 265 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 TMCC3Q9ULS5 477 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 RUVBL2Q9Y230 463 aaKnown RBP11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 HS6ST1O60243 411 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 FTH1P02794 183 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 MT-ND2P03891 347 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 ALPLP05186 524 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 GZMKP49863 264 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 BCAR1P56945 870 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 GABARAPL2P60520 117 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 ENPEPQ07075 957 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 STXBP2Q15833 593 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 LCN8Q6JVE9 175 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 RIOX2Q8IUF8 465 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 CERS2Q96G23 380 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 AGAP2Q99490 1192 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 IFT46Q9NQC8 304 aa11.96□□□□□ -0.49
LIMCH1-213ENST00000511496 GNGT2O14610 69 aa11.96□□□□□ -0.5
LIMCH1-213ENST00000511496 ANGPT2O15123 496 aa11.96□□□□□ -0.5
LIMCH1-213ENST00000511496 CDO1Q16878 200 aa11.96□□□□□ -0.5
LIMCH1-213ENST00000511496 SCYL2Q6P3W7 929 aa11.96□□□□□ -0.5
LIMCH1-213ENST00000511496 PRSS48Q7RTY5 328 aa11.96□□□□□ -0.5
LIMCH1-213ENST00000511496 KIF18BQ86Y91 864 aa11.96□□□□□ -0.5
LIMCH1-213ENST00000511496 TAGAPQ8N103 731 aa11.96□□□□□ -0.5
LIMCH1-213ENST00000511496 TWNKQ96RR1 684 aa11.96□□□□□ -0.5
LIMCH1-213ENST00000511496 APOL4Q9BPW4 351 aa11.96□□□□□ -0.5
LIMCH1-213ENST00000511496 GPATCH2LQ9NWQ4 482 aa11.96□□□□□ -0.5
LIMCH1-213ENST00000511496 RGS17Q9UGC6 210 aaPredicted RBP11.96□□□□□ -0.5
LIMCH1-213ENST00000511496 PRR12Q9ULL5 1215 aa11.96□□□□□ -0.5
LIMCH1-213ENST00000511496 RNF112Q9ULX5 631 aa11.96□□□□□ -0.5
LIMCH1-213ENST00000511496 TTC24A2A3L6 582 aaPredicted RBP11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 TMEM150BA6NC51 233 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 PRMT5O14744 637 aaPredicted RBP11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 SH3BP5O60239 455 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 H2AFYO75367 372 aaKnown RBP11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 CSTF2P33240 577 aaKnown RBP eCLIP11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 SPRP35270 261 aaPredicted RBP11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 ERVK-21P61565 698 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 PLIN5Q00G26 463 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 TEKQ02763 1124 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 LAPTM5Q13571 262 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 CREB3L2Q70SY1 520 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 COMMD7Q86VX2 200 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 ZNF540Q8NDQ6 660 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 ZMIZ2Q8NF64 920 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 VAT1Q99536 393 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 BCL7BQ9BQE9 202 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 PPA2Q9H2U2 334 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 CYP4F12Q9HCS2 524 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 ADGRE2Q9UHX3 823 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 PNMA8CA0A1B0GUJ8 204 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 KPNA6O60684 536 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 HMGCRP04035 888 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 NR3C2P08235 984 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 RFX2P48378 723 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 MASP1P48740 699 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 C1QTNF8P60827 252 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 CUL2Q13617 745 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 IRAK1BP1Q5VVH5 260 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 GPAT2Q6NUI2 795 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 C16orf86Q6ZW13 317 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 DNERQ8NFT8 737 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 ST8SIA4Q92187 359 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 ZNF516Q92618 1163 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 MAGEB10Q96LZ2 347 aaPredicted RBP11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 Q96MT0 163 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 PPP1R2P1Q96PQ5 205 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 OR2A14Q96R47 310 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 RSPH9Q9H1X1 276 aaPredicted RBP11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 MAP10Q9P2G4 905 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 RAPGEFL1Q9UHV5 662 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms