RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 APOBEC3GQ9HC16 384 aaKnown RBP2.51□□□□□ -2.01
NUP54-208ENST00000508604 PLCB1Q9NQ66 1216 aa2.51□□□□□ -2.01
NUP54-208ENST00000508604 A4GNTQ9UNA3 340 aa2.51□□□□□ -2.01
NUP54-208ENST00000508604 CEPT1Q9Y6K0 416 aa2.51□□□□□ -2.01
NUP54-208ENST00000508604 FLT1P17948 1338 aa2.51□□□□□ -2.01
NUP54-208ENST00000508604 MAGEB17A8MXT2 336 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 B9A039 149 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 VCYO14598 125 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 RTL8CO15255 209 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 TPOP07202 933 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 HTR3AP46098 478 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 CDH15P55291 814 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 PDCD2Q16342 344 aaPredicted RBP2.5□□□□□ -2.01
NUP54-208ENST00000508604 DUOXA1Q1HG43 343 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 USP41Q3LFD5 358 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 ZNF766Q5HY98 468 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 WDR45BQ5MNZ6 344 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 C6orf141Q5SZD1 244 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 HAPLN4Q86UW8 402 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 ADIPOR2Q86V24 386 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 SCML4Q8N228 414 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 LINC00612Q8N6U2 182 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 RBM15BQ8NDT2 890 aaKnown RBP2.5□□□□□ -2.01
NUP54-208ENST00000508604 OR2L2Q8NH16 312 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 SLC44A1Q8WWI5 657 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 RILPL2Q969X0 211 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 TMEM143Q96AN5 459 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 PKP2Q99959 881 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 PIGQQ9BRB3 760 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 RHNO1Q9BSD3 238 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 PCGF1Q9BSM1 259 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 HEMGNQ9BXL5 484 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 TKTL2Q9H0I9 626 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 DLGAP2Q9P1A6 1054 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 HCN3Q9P1Z3 774 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 PRO0461Q9UI25 63 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 AAR2Q9Y312 384 aaKnown RBP2.5□□□□□ -2.01
NUP54-208ENST00000508604 ZNF318Q5VUA4 2279 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 GIMAP1-GIMAP5A0A087WTJ2 511 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 A0A087WW49 117 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 TEX13CA0A0J9YWL9 993 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 C15orf62A8K5M9 175 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 ANKRD28O15084 1053 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 IRAK2O43187 625 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 TFAP2AP05549 437 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 LIFP15018 202 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 VEGFAP15692 232 aaPredicted RBP2.5□□□□□ -2.01
NUP54-208ENST00000508604 UBA7P41226 1012 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 GNAQP50148 359 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 SLC12A1Q13621 1099 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 NFIL3Q16649 462 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 PLXDC2Q6UX71 529 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 QSOX2Q6ZRP7 698 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 NRROSQ86YC3 692 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 GIMAP5Q96F15 307 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 TMEM47Q9BQJ4 181 aa2.5□□□□□ -2.01
NUP54-208ENST00000508604 INTS2Q9H0H0 1204 aaKnown RBP2.5□□□□□ -2.01
NUP54-208ENST00000508604 CNOT7Q9UIV1 285 aaKnown RBP2.5□□□□□ -2.01
NUP54-208ENST00000508604 hCG_1642624A0A1W2PR95 340 aa2.49□□□□□ -2.01
NUP54-208ENST00000508604 USP17L23D6RBM5 183 aa2.49□□□□□ -2.01
NUP54-208ENST00000508604 TRMUO75648 421 aaKnown RBP2.49□□□□□ -2.01
NUP54-208ENST00000508604 URODP06132 367 aa2.49□□□□□ -2.01
NUP54-208ENST00000508604 KRT19P08727 400 aa2.49□□□□□ -2.01
NUP54-208ENST00000508604 ANXA7P20073 488 aaKnown RBP2.49□□□□□ -2.01
NUP54-208ENST00000508604 CDC25CP30307 473 aa2.49□□□□□ -2.01
NUP54-208ENST00000508604 PGM1P36871 562 aa2.49□□□□□ -2.01
NUP54-208ENST00000508604 SNX16P57768 344 aa2.49□□□□□ -2.01
NUP54-208ENST00000508604 MS4A2Q01362 244 aa2.49□□□□□ -2.01
NUP54-208ENST00000508604 RAPSNQ13702 412 aa2.49□□□□□ -2.01
NUP54-208ENST00000508604 CCDC174Q6PII3 467 aa2.49□□□□□ -2.01
NUP54-208ENST00000508604 SLC22A25Q6T423 547 aa2.49□□□□□ -2.01
NUP54-208ENST00000508604 PAF1Q8N7H5 531 aa2.49□□□□□ -2.01
NUP54-208ENST00000508604 UTP15Q8TED0 518 aaKnown RBP2.49□□□□□ -2.01
NUP54-208ENST00000508604 ELP4Q96EB1 424 aa2.49□□□□□ -2.01
NUP54-208ENST00000508604 MAGED4Q96JG8 741 aa2.49□□□□□ -2.01
NUP54-208ENST00000508604 REEP2Q9BRK0 252 aa2.49□□□□□ -2.01
NUP54-208ENST00000508604 TMEM181Q9P2C4 612 aa2.49□□□□□ -2.01
NUP54-208ENST00000508604 ASIC3Q9UHC3 531 aa2.49□□□□□ -2.01
NUP54-208ENST00000508604 SCINQ9Y6U3 715 aa2.49□□□□□ -2.01
NUP54-208ENST00000508604 GAGE10A6NGK3 116 aa2.48□□□□□ -2.01
NUP54-208ENST00000508604 FAM90A26D6RGX4 464 aa2.48□□□□□ -2.01
NUP54-208ENST00000508604 TAF4O00268 1085 aa2.48□□□□□ -2.01
NUP54-208ENST00000508604 MOCS3O95396 460 aa2.48□□□□□ -2.01
NUP54-208ENST00000508604 CEBPBP17676 345 aa2.48□□□□□ -2.01
NUP54-208ENST00000508604 HOXC9P31274 260 aa2.48□□□□□ -2.01
NUP54-208ENST00000508604 WNT5AP41221 380 aa2.48□□□□□ -2.01
NUP54-208ENST00000508604 DRAP1Q14919 205 aaPredicted RBP2.48□□□□□ -2.01
NUP54-208ENST00000508604 HIST2H2BDQ6DRA6 164 aa2.48□□□□□ -2.01
NUP54-208ENST00000508604 PAPD4Q6PIY7 484 aaKnown RBP2.48□□□□□ -2.01
NUP54-208ENST00000508604 ISCA2Q86U28 154 aa2.48□□□□□ -2.01
NUP54-208ENST00000508604 SIL1Q9H173 461 aa2.48□□□□□ -2.01
NUP54-208ENST00000508604 ZNF71Q9NQZ8 489 aaPredicted RBP2.48□□□□□ -2.01
NUP54-208ENST00000508604 HSPB7Q9UBY9 170 aa2.48□□□□□ -2.01
NUP54-208ENST00000508604 MAN1B1Q9UKM7 699 aa2.48□□□□□ -2.01
NUP54-208ENST00000508604 KLK13Q9UKR3 277 aa2.48□□□□□ -2.01
NUP54-208ENST00000508604 PCNX3Q9H6A9 2034 aa2.48□□□□□ -2.01
NUP54-208ENST00000508604 IGLV3-10A0A075B6K4 115 aa2.47□□□□□ -2.01
NUP54-208ENST00000508604 IGHV4-4A0A075B6R2 117 aa2.47□□□□□ -2.01
NUP54-208ENST00000508604 PPM1GO15355 546 aaPredicted RBP2.47□□□□□ -2.01
NUP54-208ENST00000508604 SYNCRIPO60506 623 aaKnown RBP2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms