RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 THOP1P52888 689 aa9.95□□□□□ -0.82
NUP54-203ENST00000504173 YPEL5P62699 121 aa9.95□□□□□ -0.82
NUP54-203ENST00000504173 PRAMEP78395 509 aa9.95□□□□□ -0.82
NUP54-203ENST00000504173 CDK3Q00526 305 aa9.95□□□□□ -0.82
NUP54-203ENST00000504173 ITGA9Q13797 1035 aa9.95□□□□□ -0.82
NUP54-203ENST00000504173 PDE1CQ14123 709 aaPredicted RBP9.95□□□□□ -0.82
NUP54-203ENST00000504173 PTK2BQ14289 1009 aa9.95□□□□□ -0.82
NUP54-203ENST00000504173 HLTFQ14527 1009 aaKnown RBP eCLIP9.95□□□□□ -0.82
NUP54-203ENST00000504173 NFATC4Q14934 902 aa9.95□□□□□ -0.82
NUP54-203ENST00000504173 CHRNA6Q15825 494 aa9.95□□□□□ -0.82
NUP54-203ENST00000504173 MSS51Q4VC12 460 aa9.95□□□□□ -0.82
NUP54-203ENST00000504173 COLEC12Q5KU26 742 aa9.95□□□□□ -0.82
NUP54-203ENST00000504173 PDPK2PQ6A1A2 396 aa9.95□□□□□ -0.82
NUP54-203ENST00000504173 AFTPHQ6ULP2 937 aa9.95□□□□□ -0.82
NUP54-203ENST00000504173 CES3Q6UWW8 571 aa9.95□□□□□ -0.82
NUP54-203ENST00000504173 ZDHHC24Q6UX98 284 aa9.95□□□□□ -0.82
NUP54-203ENST00000504173 ADAMTSL4Q6UY14 1074 aa9.95□□□□□ -0.82
NUP54-203ENST00000504173 CENPUQ71F23 418 aa9.95□□□□□ -0.82
NUP54-203ENST00000504173 GLRX5Q86SX6 157 aa9.95□□□□□ -0.82
NUP54-203ENST00000504173 IFT20Q8IY31 132 aa9.95□□□□□ -0.82
NUP54-203ENST00000504173 AGGF1Q8N302 714 aaeCLIP9.95□□□□□ -0.82
NUP54-203ENST00000504173 FBXO25Q8TCJ0 367 aa9.95□□□□□ -0.82
NUP54-203ENST00000504173 IFT81Q8WYA0 676 aa9.95□□□□□ -0.82
NUP54-203ENST00000504173 HDAC10Q969S8 669 aa9.95□□□□□ -0.82
NUP54-203ENST00000504173 FUBP1Q96AE4 644 aaKnown RBP9.95□□□□□ -0.82
NUP54-203ENST00000504173 ZNF669Q96BR6 464 aaPredicted RBP9.95□□□□□ -0.82
NUP54-203ENST00000504173 STAMBPL1Q96FJ0 436 aa9.95□□□□□ -0.82
NUP54-203ENST00000504173 CDKN2AIPNLQ96HQ2 116 aa9.95□□□□□ -0.82
NUP54-203ENST00000504173 SIGLEC10Q96LC7 697 aa9.95□□□□□ -0.82
NUP54-203ENST00000504173 TBATAQ96M53 351 aa9.95□□□□□ -0.82
NUP54-203ENST00000504173 ZNF778Q96MU6 729 aa9.95□□□□□ -0.82
NUP54-203ENST00000504173 FCRL3Q96P31 734 aaPredicted RBP9.95□□□□□ -0.82
NUP54-203ENST00000504173 IL26Q9NPH9 171 aa9.95□□□□□ -0.82
NUP54-203ENST00000504173 MTRF1LQ9UGC7 380 aaKnown RBP9.95□□□□□ -0.82
NUP54-203ENST00000504173 SLC6A14Q9UN76 642 aa9.95□□□□□ -0.82
NUP54-203ENST00000504173 APOBEC2Q9Y235 224 aaKnown RBP9.95□□□□□ -0.82
NUP54-203ENST00000504173 SLC30A1Q9Y6M5 507 aa9.95□□□□□ -0.82
NUP54-203ENST00000504173 FAM237BA0A1B0GVD1 139 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 CCDC162PA2VCL2 907 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 BHMG1C9JSJ3 638 aaPredicted RBP9.94□□□□□ -0.82
NUP54-203ENST00000504173 H7C0S8 307 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 ERVH48-1M5A8F1 160 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 GAPDHSO14556 408 aaPredicted RBP9.94□□□□□ -0.82
NUP54-203ENST00000504173 EIF3HO15372 352 aaKnown RBP eCLIP9.94□□□□□ -0.82
NUP54-203ENST00000504173 SRP72O76094 671 aaKnown RBP9.94□□□□□ -0.82
NUP54-203ENST00000504173 MYCLP1P12525 358 aaPredicted RBP9.94□□□□□ -0.82
NUP54-203ENST00000504173 PGAM1P18669 254 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 PAMP19021 973 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 KELP23276 732 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 ITPKBP27987 946 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 HTR1BP28222 390 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 TRIM23P36406 574 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 ELK3P41970 407 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 NXPH1P58417 271 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 KIAA1024LP59773 190 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 TUBB4BP68371 445 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 XIAPP98170 497 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 ACVR1Q04771 509 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 GRIK2Q13002 908 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 PDIA2Q13087 525 aaKnown RBP9.94□□□□□ -0.82
NUP54-203ENST00000504173 SLC14A1Q13336 389 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 CAMK2BQ13554 666 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 PEX6Q13608 980 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 CUL1Q13616 776 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 ATP13A5Q4VNC0 1218 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 ZRANB3Q5FWF4 1079 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 HP1BP3Q5SSJ5 553 aaPredicted RBP9.94□□□□□ -0.82
NUP54-203ENST00000504173 TRIM74Q86UV6 250 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 CCDC25Q86WR0 208 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 DCP2Q8IU60 420 aaKnown RBP9.94□□□□□ -0.82
NUP54-203ENST00000504173 PHYKPLQ8IUZ5 450 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 OR13J1Q8NGT2 312 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 OR6P1Q8NGX9 317 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 GDAP1Q8TB36 358 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 ZNF398Q8TD17 642 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 DTX3LQ8TDB6 740 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 GLYATL1Q969I3 302 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 LRRC39Q96DD0 335 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 MFSD3Q96ES6 412 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 CFAP36Q96G28 342 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 HIC2Q96JB3 615 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 TEX101Q9BY14 249 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 FAM129AQ9BZQ8 928 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 FOXP3Q9BZS1 431 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 ASB8Q9H765 288 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 SUDS3Q9H7L9 328 aaPredicted RBP9.94□□□□□ -0.82
NUP54-203ENST00000504173 CAPN10Q9HC96 672 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 SAYSD1Q9NPB0 183 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 FSCN3Q9NQT6 498 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 GDF3Q9NR23 364 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 TREX1Q9NSU2 369 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 CRLS1Q9UJA2 301 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 CHMP2BQ9UQN3 213 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 ANKRD6Q9Y2G4 727 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 RPS6KL1Q9Y6S9 549 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 PTPRBP23467 1997 aa9.94□□□□□ -0.82
NUP54-203ENST00000504173 ZNF106Q9H2Y7 1883 aaKnown RBP9.93□□□□□ -0.82
NUP54-203ENST00000504173 TRABD2BA6NFA1 517 aa9.93□□□□□ -0.82
NUP54-203ENST00000504173 OR51F1A6NGY5 319 aa9.93□□□□□ -0.82
NUP54-203ENST00000504173 E7ESA3 106 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms