RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 C1orf122Q6ZSJ8 110 aa3.85□□□□□ -1.79
SMC4-223ENST00000493695 C11orf65Q8NCR3 313 aa3.85□□□□□ -1.79
SMC4-223ENST00000493695 DDHD1Q8NEL9 900 aa3.85□□□□□ -1.79
SMC4-223ENST00000493695 CSNK2A3Q8NEV1 391 aa3.85□□□□□ -1.79
SMC4-223ENST00000493695 ZNF473Q8WTR7 871 aaKnown RBP3.85□□□□□ -1.79
SMC4-223ENST00000493695 USP44Q9H0E7 712 aa3.85□□□□□ -1.79
SMC4-223ENST00000493695 BRF2Q9HAW0 419 aa3.85□□□□□ -1.79
SMC4-223ENST00000493695 MMP25Q9NPA2 562 aa3.85□□□□□ -1.79
SMC4-223ENST00000493695 KCND2Q9NZV8 630 aa3.85□□□□□ -1.79
SMC4-223ENST00000493695 MPP6Q9NZW5 540 aa3.85□□□□□ -1.79
SMC4-223ENST00000493695 MARCH4Q9P2E8 410 aaPredicted RBP3.85□□□□□ -1.79
SMC4-223ENST00000493695 ARHGAP26Q9UNA1 814 aa3.85□□□□□ -1.79
SMC4-223ENST00000493695 H7C423 109 aa3.84□□□□□ -1.79
SMC4-223ENST00000493695 TSPAN4O14817 238 aa3.84□□□□□ -1.79
SMC4-223ENST00000493695 LDLRAD4O15165 306 aa3.84□□□□□ -1.79
SMC4-223ENST00000493695 CTSVO60911 334 aa3.84□□□□□ -1.79
SMC4-223ENST00000493695 TACC1O75410 805 aa3.84□□□□□ -1.79
SMC4-223ENST00000493695 WDHD1O75717 1129 aaPredicted RBP3.84□□□□□ -1.79
SMC4-223ENST00000493695 MBD4O95243 580 aa3.84□□□□□ -1.79
SMC4-223ENST00000493695 TBX18O95935 607 aa3.84□□□□□ -1.79
SMC4-223ENST00000493695 TNFAIP3P21580 790 aa3.84□□□□□ -1.79
SMC4-223ENST00000493695 HOXC8P31273 242 aa3.84□□□□□ -1.79
SMC4-223ENST00000493695 SHMT1P34896 483 aa3.84□□□□□ -1.79
SMC4-223ENST00000493695 KRT9P35527 623 aa3.84□□□□□ -1.79
SMC4-223ENST00000493695 MAPRE1Q15691 268 aaKnown RBP3.84□□□□□ -1.79
SMC4-223ENST00000493695 LCE3AQ5TA76 89 aa3.84□□□□□ -1.79
SMC4-223ENST00000493695 MAP7D3Q8IWC1 876 aa3.84□□□□□ -1.79
SMC4-223ENST00000493695 PPHLN1Q8NEY8 458 aaKnown RBP3.84□□□□□ -1.79
SMC4-223ENST00000493695 SKA1Q96BD8 255 aa3.84□□□□□ -1.79
SMC4-223ENST00000493695 POM121L2Q96KW2 1035 aa3.84□□□□□ -1.79
SMC4-223ENST00000493695 MPHOSPH8Q99549 860 aa3.84□□□□□ -1.79
SMC4-223ENST00000493695 CABLES2Q9BTV7 478 aa3.84□□□□□ -1.79
SMC4-223ENST00000493695 GLIS2Q9BZE0 524 aaPredicted RBP3.84□□□□□ -1.79
SMC4-223ENST00000493695 ERVMER34-1Q9H9K5 563 aa3.84□□□□□ -1.79
SMC4-223ENST00000493695 RASAL2Q9UJF2 1139 aa3.84□□□□□ -1.79
SMC4-223ENST00000493695 SARDHQ9UL12 918 aa3.84□□□□□ -1.79
SMC4-223ENST00000493695 ZHX2Q9Y6X8 837 aa3.84□□□□□ -1.79
SMC4-223ENST00000493695 TDRD9Q8NDG6 1382 aaKnown RBP3.84□□□□□ -1.79
SMC4-223ENST00000493695 A0A087X0M5 115 aa3.83□□□□□ -1.8
SMC4-223ENST00000493695 A0A1B0GX30 115 aa3.83□□□□□ -1.8
SMC4-223ENST00000493695 EIF3DO15371 548 aaKnown RBP eCLIP3.83□□□□□ -1.8
SMC4-223ENST00000493695 SPINT2O43291 252 aa3.83□□□□□ -1.8
SMC4-223ENST00000493695 TGFB1I1O43294 461 aa3.83□□□□□ -1.8
SMC4-223ENST00000493695 IRF1P10914 325 aa3.83□□□□□ -1.8
SMC4-223ENST00000493695 NR2F2P24468 414 aa3.83□□□□□ -1.8
SMC4-223ENST00000493695 AHRP35869 848 aa3.83□□□□□ -1.8
SMC4-223ENST00000493695 PAFAH1B1P43034 410 aa3.83□□□□□ -1.8
SMC4-223ENST00000493695 MRPS5P82675 430 aaKnown RBP3.83□□□□□ -1.8
SMC4-223ENST00000493695 COG7P83436 770 aa3.83□□□□□ -1.8
SMC4-223ENST00000493695 SLC9B1Q4ZJI4 515 aa3.83□□□□□ -1.8
SMC4-223ENST00000493695 FFAR4Q5NUL3 377 aa3.83□□□□□ -1.8
SMC4-223ENST00000493695 LCE3EQ5T5B0 92 aa3.83□□□□□ -1.8
SMC4-223ENST00000493695 FAM69AQ5T7M9 428 aa3.83□□□□□ -1.8
SMC4-223ENST00000493695 TXNDC8Q6A555 127 aa3.83□□□□□ -1.8
SMC4-223ENST00000493695 HIST2H2BDQ6DRA6 164 aa3.83□□□□□ -1.8
SMC4-223ENST00000493695 SLC22A25Q6T423 547 aa3.83□□□□□ -1.8
SMC4-223ENST00000493695 SH2D5Q6ZV89 423 aa3.83□□□□□ -1.8
SMC4-223ENST00000493695 SLC46A3Q7Z3Q1 461 aa3.83□□□□□ -1.8
SMC4-223ENST00000493695 OR5R1Q8NH85 324 aa3.83□□□□□ -1.8
SMC4-223ENST00000493695 OR2T6Q8NHC8 308 aa3.83□□□□□ -1.8
SMC4-223ENST00000493695 FGFBP3Q8TAT2 258 aa3.83□□□□□ -1.8
SMC4-223ENST00000493695 ARHGEF26Q96DR7 871 aa3.83□□□□□ -1.8
SMC4-223ENST00000493695 NEUROD6Q96NK8 337 aa3.83□□□□□ -1.8
SMC4-223ENST00000493695 PSD2Q9BQI7 771 aa3.83□□□□□ -1.8
SMC4-223ENST00000493695 LRMDAQ9H2I8 198 aa3.83□□□□□ -1.8
SMC4-223ENST00000493695 PLEKHA4Q9H4M7 779 aa3.83□□□□□ -1.8
SMC4-223ENST00000493695 TAS2R10Q9NYW0 307 aa3.83□□□□□ -1.8
SMC4-223ENST00000493695 ITIH6Q6UXX5 1313 aa3.83□□□□□ -1.8
SMC4-223ENST00000493695 NOTCH2Q04721 2471 aa3.82□□□□□ -1.8
SMC4-223ENST00000493695 NPIPB15A6NHN6 443 aaPredicted RBP3.82□□□□□ -1.8
SMC4-223ENST00000493695 A6NL46 340 aa3.82□□□□□ -1.8
SMC4-223ENST00000493695 BAIAP3O94812 1187 aa3.82□□□□□ -1.8
SMC4-223ENST00000493695 RTN3O95197 1032 aaPredicted RBP3.82□□□□□ -1.8
SMC4-223ENST00000493695 DDX58O95786 925 aaKnown RBP3.82□□□□□ -1.8
SMC4-223ENST00000493695 TFP02787 698 aa3.82□□□□□ -1.8
SMC4-223ENST00000493695 UBL4AP11441 157 aa3.82□□□□□ -1.8
SMC4-223ENST00000493695 CAPN3P20807 821 aa3.82□□□□□ -1.8
SMC4-223ENST00000493695 ABCD1P33897 745 aa3.82□□□□□ -1.8
SMC4-223ENST00000493695 TAS2R38P59533 333 aa3.82□□□□□ -1.8
SMC4-223ENST00000493695 FOXD4Q12950 439 aaPredicted RBP3.82□□□□□ -1.8
SMC4-223ENST00000493695 ZC2HC1CQ53FD0 456 aaPredicted RBP3.82□□□□□ -1.8
SMC4-223ENST00000493695 FAAH2Q6GMR7 532 aa3.82□□□□□ -1.8
SMC4-223ENST00000493695 SIGIRRQ6IA17 410 aa3.82□□□□□ -1.8
SMC4-223ENST00000493695 ZNF704Q6ZNC4 412 aaPredicted RBP3.82□□□□□ -1.8
SMC4-223ENST00000493695 PLEKHM3Q6ZWE6 761 aa3.82□□□□□ -1.8
SMC4-223ENST00000493695 TMTC3Q6ZXV5 915 aa3.82□□□□□ -1.8
SMC4-223ENST00000493695 R3HCC1LQ7Z5L2 792 aaKnown RBP3.82□□□□□ -1.8
SMC4-223ENST00000493695 ACVR1CQ8NER5 493 aa3.82□□□□□ -1.8
SMC4-223ENST00000493695 TRIM58Q8NG06 486 aa3.82□□□□□ -1.8
SMC4-223ENST00000493695 TDRD7Q8NHU6 1098 aaKnown RBP3.82□□□□□ -1.8
SMC4-223ENST00000493695 HDAC2Q92769 488 aaKnown RBP3.82□□□□□ -1.8
SMC4-223ENST00000493695 GRAMD2BQ96HH9 432 aa3.82□□□□□ -1.8
SMC4-223ENST00000493695 MCRIP2Q9BUT9 160 aaKnown RBP3.82□□□□□ -1.8
SMC4-223ENST00000493695 C20orf141Q9NUB4 165 aa3.82□□□□□ -1.8
SMC4-223ENST00000493695 ADPRHL2Q9NX46 363 aa3.82□□□□□ -1.8
SMC4-223ENST00000493695 ZCWPW2A0A1B0GU75 182 aa3.81□□□□□ -1.8
SMC4-223ENST00000493695 A0A1W2PNU3 283 aaPredicted RBP3.81□□□□□ -1.8
SMC4-223ENST00000493695 A0A1W2PPH5 198 aa3.81□□□□□ -1.8
SMC4-223ENST00000493695 CTAGE9A4FU28 777 aa3.81□□□□□ -1.8
SMC4-223ENST00000493695 E9PQ18 207 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms