RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 PELI3Q8N2H9 469 aa12.54□□□□□ -0.4
VPS52-220ENST00000493674 GPATCH11Q8N954 259 aa12.54□□□□□ -0.4
VPS52-220ENST00000493674 PJA1Q8NG27 643 aa12.54□□□□□ -0.4
VPS52-220ENST00000493674 MDM1Q8TC05 714 aa12.54□□□□□ -0.4
VPS52-220ENST00000493674 ASB12Q8WXK4 309 aa12.54□□□□□ -0.4
VPS52-220ENST00000493674 CENPTQ96BT3 561 aa12.54□□□□□ -0.4
VPS52-220ENST00000493674 AP2M1Q96CW1 435 aa12.54□□□□□ -0.4
VPS52-220ENST00000493674 UBXN10Q96LJ8 280 aa12.54□□□□□ -0.4
VPS52-220ENST00000493674 SELENOSQ9BQE4 189 aa12.54□□□□□ -0.4
VPS52-220ENST00000493674 BOCQ9BWV1 1114 aa12.54□□□□□ -0.4
VPS52-220ENST00000493674 SPATA16Q9BXB7 569 aa12.54□□□□□ -0.4
VPS52-220ENST00000493674 C1QTNF2Q9BXJ5 285 aa12.54□□□□□ -0.4
VPS52-220ENST00000493674 C2orf42Q9NWW7 574 aa12.54□□□□□ -0.4
VPS52-220ENST00000493674 EMCNQ9ULC0 261 aa12.54□□□□□ -0.4
VPS52-220ENST00000493674 CNOT6Q9ULM6 557 aaKnown RBP12.54□□□□□ -0.4
VPS52-220ENST00000493674 ZFR2Q9UPR6 939 aaKnown RBP12.54□□□□□ -0.4
VPS52-220ENST00000493674 PLLPQ9Y342 182 aa12.54□□□□□ -0.4
VPS52-220ENST00000493674 OAS3Q9Y6K5 1087 aaKnown RBP12.54□□□□□ -0.4
VPS52-220ENST00000493674 A0A087X1B8 175 aa12.53□□□□□ -0.4
VPS52-220ENST00000493674 UBA6A0AVT1 1052 aaPredicted RBP12.53□□□□□ -0.4
VPS52-220ENST00000493674 FAM170BA6NMN3 283 aa12.53□□□□□ -0.4
VPS52-220ENST00000493674 K7ESM1 405 aa12.53□□□□□ -0.4
VPS52-220ENST00000493674 NEMP1O14524 444 aa12.53□□□□□ -0.4
VPS52-220ENST00000493674 COPEO14579 308 aa12.53□□□□□ -0.4
VPS52-220ENST00000493674 PHGDHO43175 533 aaKnown RBP12.53□□□□□ -0.4
VPS52-220ENST00000493674 SGTAO43765 313 aa12.53□□□□□ -0.4
VPS52-220ENST00000493674 TM7SF2O76062 418 aa12.53□□□□□ -0.4
VPS52-220ENST00000493674 ASMTLO95671 621 aa12.53□□□□□ -0.4
VPS52-220ENST00000493674 TOP3BO95985 862 aaKnown RBP12.53□□□□□ -0.4
VPS52-220ENST00000493674 ZNF7P17097 686 aaPredicted RBP12.53□□□□□ -0.4
VPS52-220ENST00000493674 FMO4P31512 558 aa12.53□□□□□ -0.4
VPS52-220ENST00000493674 GMPRP36959 345 aa12.53□□□□□ -0.4
VPS52-220ENST00000493674 SLC26A3P40879 764 aa12.53□□□□□ -0.4
VPS52-220ENST00000493674 MDH1P40925 334 aaKnown RBP12.53□□□□□ -0.4
VPS52-220ENST00000493674 NSG1P42857 185 aa12.53□□□□□ -0.4
VPS52-220ENST00000493674 ATP1A2P50993 1020 aa12.53□□□□□ -0.4
VPS52-220ENST00000493674 TPMTP51580 245 aa12.53□□□□□ -0.4
VPS52-220ENST00000493674 RPS21P63220 83 aaKnown RBP12.53□□□□□ -0.4
VPS52-220ENST00000493674 IRF9Q00978 393 aa12.53□□□□□ -0.4
VPS52-220ENST00000493674 FGL2Q14314 439 aa12.53□□□□□ -0.4
VPS52-220ENST00000493674 ZNF460Q14592 562 aa12.53□□□□□ -0.4
VPS52-220ENST00000493674 UBXN2BQ14CS0 331 aa12.53□□□□□ -0.4
VPS52-220ENST00000493674 KHDC1Q4VXA5 237 aaKnown RBP12.53□□□□□ -0.4
VPS52-220ENST00000493674 SEL1L3Q68CR1 1132 aa12.53□□□□□ -0.4
VPS52-220ENST00000493674 PLD6Q8N2A8 252 aaKnown RBP12.53□□□□□ -0.4
VPS52-220ENST00000493674 TCP10LQ8TDR4 215 aa12.53□□□□□ -0.4
VPS52-220ENST00000493674 BTN2A2Q8WVV5 523 aa12.53□□□□□ -0.4
VPS52-220ENST00000493674 KCNJ9Q92806 393 aa12.53□□□□□ -0.4
VPS52-220ENST00000493674 GLYATL1Q969I3 302 aa12.53□□□□□ -0.4
VPS52-220ENST00000493674 GPR78Q96P69 363 aa12.53□□□□□ -0.4
VPS52-220ENST00000493674 TTC1Q99614 292 aa12.53□□□□□ -0.4
VPS52-220ENST00000493674 COPS8Q99627 209 aa12.53□□□□□ -0.4
VPS52-220ENST00000493674 POLMQ9NP87 494 aaPredicted RBP12.53□□□□□ -0.4
VPS52-220ENST00000493674 CD93Q9NPY3 652 aa12.53□□□□□ -0.4
VPS52-220ENST00000493674 C11orf16Q9NQ32 467 aa12.53□□□□□ -0.4
VPS52-220ENST00000493674 ITM2CQ9NQX7 267 aa12.53□□□□□ -0.4
VPS52-220ENST00000493674 EBF1Q9UH73 591 aa12.53□□□□□ -0.4
VPS52-220ENST00000493674 DCDC2Q9UHG0 476 aa12.53□□□□□ -0.4
VPS52-220ENST00000493674 PRSS21Q9Y6M0 314 aa12.53□□□□□ -0.4
VPS52-220ENST00000493674 PCM1Q15154 2024 aa12.52□□□□□ -0.4
VPS52-220ENST00000493674 ABCA7Q8IZY2 2146 aa12.52□□□□□ -0.4
VPS52-220ENST00000493674 IGLON5A6NGN9 336 aa12.52□□□□□ -0.41
VPS52-220ENST00000493674 H3BMM5 538 aa12.52□□□□□ -0.41
VPS52-220ENST00000493674 LZTS3O60299 673 aaPredicted RBP12.52□□□□□ -0.41
VPS52-220ENST00000493674 SHOX2O60902 331 aaPredicted RBP12.52□□□□□ -0.41
VPS52-220ENST00000493674 NIPSNAP2O75323 286 aa12.52□□□□□ -0.41
VPS52-220ENST00000493674 PYGLP06737 847 aa12.52□□□□□ -0.41
VPS52-220ENST00000493674 ZNF37AP17032 561 aaPredicted RBP12.52□□□□□ -0.41
VPS52-220ENST00000493674 PGGT1BP53609 377 aa12.52□□□□□ -0.41
VPS52-220ENST00000493674 DLG1Q12959 904 aa12.52□□□□□ -0.41
VPS52-220ENST00000493674 TAF1BQ53T94 588 aaPredicted RBP12.52□□□□□ -0.41
VPS52-220ENST00000493674 LDLRAP1Q5SW96 308 aa12.52□□□□□ -0.41
VPS52-220ENST00000493674 TMEM207Q6UWW9 146 aa12.52□□□□□ -0.41
VPS52-220ENST00000493674 KIAA1324Q6UXG2 1013 aaKnown RBP12.52□□□□□ -0.41
VPS52-220ENST00000493674 ADAMTSL4Q6UY14 1074 aa12.52□□□□□ -0.41
VPS52-220ENST00000493674 KYAT3Q6YP21 454 aaKnown RBP12.52□□□□□ -0.41
VPS52-220ENST00000493674 PIM3Q86V86 326 aa12.52□□□□□ -0.41
VPS52-220ENST00000493674 TRIM69Q86WT6 500 aa12.52□□□□□ -0.41
VPS52-220ENST00000493674 HORMAD1Q86X24 394 aa12.52□□□□□ -0.41
VPS52-220ENST00000493674 TP53I13Q8NBR0 393 aaPredicted RBP12.52□□□□□ -0.41
VPS52-220ENST00000493674 GIMAP7Q8NHV1 300 aa12.52□□□□□ -0.41
VPS52-220ENST00000493674 HEXDCQ8WVB3 486 aa12.52□□□□□ -0.41
VPS52-220ENST00000493674 COX14Q96I36 57 aa12.52□□□□□ -0.41
VPS52-220ENST00000493674 IER2Q9BTL4 223 aa12.52□□□□□ -0.41
VPS52-220ENST00000493674 CLPBQ9H078 707 aa12.52□□□□□ -0.41
VPS52-220ENST00000493674 CCDC134Q9H6E4 229 aa12.52□□□□□ -0.41
VPS52-220ENST00000493674 KCNK9Q9NPC2 374 aa12.52□□□□□ -0.41
VPS52-220ENST00000493674 LATS2Q9NRM7 1088 aa12.52□□□□□ -0.41
VPS52-220ENST00000493674 IGSF5Q9NSI5 407 aa12.52□□□□□ -0.41
VPS52-220ENST00000493674 SLC17A7Q9P2U7 560 aa12.52□□□□□ -0.41
VPS52-220ENST00000493674 GNPTGQ9UJJ9 305 aa12.52□□□□□ -0.41
VPS52-220ENST00000493674 ADAM21Q9UKJ8 722 aa12.52□□□□□ -0.41
VPS52-220ENST00000493674 NCKAP1Q9Y2A7 1128 aa12.52□□□□□ -0.41
VPS52-220ENST00000493674 ACOT9Q9Y305 439 aa12.52□□□□□ -0.41
VPS52-220ENST00000493674 TDRD6O60522 2096 aaKnown RBP12.52□□□□□ -0.41
VPS52-220ENST00000493674 ARHGEF17Q96PE2 2063 aaPredicted RBP12.52□□□□□ -0.41
VPS52-220ENST00000493674 A0A1W2PQU0 124 aa12.51□□□□□ -0.41
VPS52-220ENST00000493674 GOLGA8CPA6NN73 597 aa12.51□□□□□ -0.41
VPS52-220ENST00000493674 PLIN3O60664 434 aa12.51□□□□□ -0.41
VPS52-220ENST00000493674 RNGTTO60942 597 aaKnown RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms