RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 OR6C4Q8NGE1 309 aa17.91■□□□□ 0.46
COL9A3-214ENST00000490398 OR13C4Q8NGS5 318 aa17.91■□□□□ 0.46
COL9A3-214ENST00000490398 SLC37A2Q8TED4 501 aa17.91■□□□□ 0.46
COL9A3-214ENST00000490398 CCDC97Q96F63 343 aaPredicted RBP17.91■□□□□ 0.46
COL9A3-214ENST00000490398 GFM1Q96RP9 751 aaKnown RBP17.91■□□□□ 0.46
COL9A3-214ENST00000490398 FERMT1Q9BQL6 677 aa17.91■□□□□ 0.46
COL9A3-214ENST00000490398 PIH1D1Q9NWS0 290 aaKnown RBP17.91■□□□□ 0.46
COL9A3-214ENST00000490398 FKBPLQ9UIM3 349 aa17.91■□□□□ 0.46
COL9A3-214ENST00000490398 SATB2Q9UPW6 733 aa17.91■□□□□ 0.46
COL9A3-214ENST00000490398 GLYATL1P3A0A0U1RQE8 302 aa17.9■□□□□ 0.46
COL9A3-214ENST00000490398 D6RAR5 112 aa17.9■□□□□ 0.46
COL9A3-214ENST00000490398 CHUKO15111 745 aa17.9■□□□□ 0.46
COL9A3-214ENST00000490398 PNLIPP16233 465 aa17.9■□□□□ 0.46
COL9A3-214ENST00000490398 TPH1P17752 444 aa17.9■□□□□ 0.46
COL9A3-214ENST00000490398 GABREP78334 506 aa17.9■□□□□ 0.46
COL9A3-214ENST00000490398 TMPRSS15P98073 1019 aa17.9■□□□□ 0.46
COL9A3-214ENST00000490398 LRP8Q14114 963 aa17.9■□□□□ 0.46
COL9A3-214ENST00000490398 C3orf38Q5JPI3 329 aa17.9■□□□□ 0.46
COL9A3-214ENST00000490398 C19orf48Q6RUI8 117 aa17.9■□□□□ 0.46
COL9A3-214ENST00000490398 ZNF438Q7Z4V0 828 aa17.9■□□□□ 0.46
COL9A3-214ENST00000490398 RTP4Q96DX8 246 aa17.9■□□□□ 0.46
COL9A3-214ENST00000490398 VPS35Q96QK1 796 aa17.9■□□□□ 0.46
COL9A3-214ENST00000490398 KCNF1Q9H3M0 494 aa17.9■□□□□ 0.46
COL9A3-214ENST00000490398 RMI1Q9H9A7 625 aa17.9■□□□□ 0.46
COL9A3-214ENST00000490398 RDH14Q9HBH5 336 aa17.9■□□□□ 0.46
COL9A3-214ENST00000490398 PRDM8Q9NQV8 689 aa17.9■□□□□ 0.46
COL9A3-214ENST00000490398 KLC4Q9NSK0 619 aa17.9■□□□□ 0.46
COL9A3-214ENST00000490398 SCHIP1Q9P0W5 487 aaPredicted RBP17.9■□□□□ 0.46
COL9A3-214ENST00000490398 GOLGA6L3A6NEY3 463 aa17.89■□□□□ 0.45
COL9A3-214ENST00000490398 STX7O15400 261 aaKnown RBP17.89■□□□□ 0.45
COL9A3-214ENST00000490398 SNX2O60749 519 aa17.89■□□□□ 0.45
COL9A3-214ENST00000490398 ALDH4A1P30038 563 aa17.89■□□□□ 0.45
COL9A3-214ENST00000490398 CXCR5P32302 372 aa17.89■□□□□ 0.45
COL9A3-214ENST00000490398 CTSCP53634 463 aa17.89■□□□□ 0.45
COL9A3-214ENST00000490398 XIAPP98170 497 aa17.89■□□□□ 0.45
COL9A3-214ENST00000490398 CFHR1Q03591 330 aa17.89■□□□□ 0.45
COL9A3-214ENST00000490398 TMEM115Q12893 351 aaPredicted RBP17.89■□□□□ 0.45
COL9A3-214ENST00000490398 NR1D2Q14995 579 aa17.89■□□□□ 0.45
COL9A3-214ENST00000490398 TAF1AQ15573 450 aaPredicted RBP17.89■□□□□ 0.45
COL9A3-214ENST00000490398 AMZ1Q400G9 498 aa17.89■□□□□ 0.45
COL9A3-214ENST00000490398 GPRC6AQ5T6X5 926 aa17.89■□□□□ 0.45
COL9A3-214ENST00000490398 NKAIN2Q5VXU1 208 aa17.89■□□□□ 0.45
COL9A3-214ENST00000490398 USP53Q70EK8 1073 aa17.89■□□□□ 0.45
COL9A3-214ENST00000490398 C11orf96Q7Z7L8 435 aa17.89■□□□□ 0.45
COL9A3-214ENST00000490398 SFRP1Q8N474 314 aa17.89■□□□□ 0.45
COL9A3-214ENST00000490398 NUDT22Q9BRQ3 303 aa17.89■□□□□ 0.45
COL9A3-214ENST00000490398 ARNT2Q9HBZ2 717 aa17.89■□□□□ 0.45
COL9A3-214ENST00000490398 ACACAQ13085 2346 aa17.88■□□□□ 0.45
COL9A3-214ENST00000490398 PRR19A6NJB7 356 aa17.88■□□□□ 0.45
COL9A3-214ENST00000490398 RHPN2P1A8MT19 583 aa17.88■□□□□ 0.45
COL9A3-214ENST00000490398 LDB2O43679 373 aa17.88■□□□□ 0.45
COL9A3-214ENST00000490398 CDK14O94921 469 aa17.88■□□□□ 0.45
COL9A3-214ENST00000490398 ZSCAN5DPP0CG00 497 aa17.88■□□□□ 0.45
COL9A3-214ENST00000490398 HGFP14210 728 aa17.88■□□□□ 0.45
COL9A3-214ENST00000490398 LPOP22079 712 aaPredicted RBP17.88■□□□□ 0.45
COL9A3-214ENST00000490398 CD1CP29017 333 aa17.88■□□□□ 0.45
COL9A3-214ENST00000490398 ZNF140P52738 457 aaPredicted RBP17.88■□□□□ 0.45
COL9A3-214ENST00000490398 PEX6Q13608 980 aa17.88■□□□□ 0.45
COL9A3-214ENST00000490398 CHCHD2P9Q5T1J5 151 aaPredicted RBP17.88■□□□□ 0.45
COL9A3-214ENST00000490398 FOXR1Q6PIV2 292 aa17.88■□□□□ 0.45
COL9A3-214ENST00000490398 ZNF574Q6ZN55 896 aaPredicted RBP17.88■□□□□ 0.45
COL9A3-214ENST00000490398 RASGEF1AQ8N9B8 481 aa17.88■□□□□ 0.45
COL9A3-214ENST00000490398 WDR48Q8TAF3 677 aa17.88■□□□□ 0.45
COL9A3-214ENST00000490398 GDAP1Q8TB36 358 aa17.88■□□□□ 0.45
COL9A3-214ENST00000490398 DTX3LQ8TDB6 740 aa17.88■□□□□ 0.45
COL9A3-214ENST00000490398 BRSK1Q8TDC3 778 aa17.88■□□□□ 0.45
COL9A3-214ENST00000490398 HNRNPLLQ8WVV9 542 aaKnown RBP17.88■□□□□ 0.45
COL9A3-214ENST00000490398 CRELD1Q96HD1 420 aa17.88■□□□□ 0.45
COL9A3-214ENST00000490398 ALS2CR12Q96Q35 445 aa17.88■□□□□ 0.45
COL9A3-214ENST00000490398 SEMA6CQ9H3T2 930 aa17.88■□□□□ 0.45
COL9A3-214ENST00000490398 FAM96AQ9H5X1 160 aa17.88■□□□□ 0.45
COL9A3-214ENST00000490398 POLR1BQ9H9Y6 1135 aa17.88■□□□□ 0.45
COL9A3-214ENST00000490398 EPB41L5Q9HCM4 733 aa17.88■□□□□ 0.45
COL9A3-214ENST00000490398 ASCL3Q9NQ33 180 aa17.88■□□□□ 0.45
COL9A3-214ENST00000490398 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP17.88■□□□□ 0.45
COL9A3-214ENST00000490398 DNAJC16Q9Y2G8 782 aa17.88■□□□□ 0.45
COL9A3-214ENST00000490398 PKP3Q9Y446 797 aa17.88■□□□□ 0.45
COL9A3-214ENST00000490398 SMG1Q96Q15 3661 aaKnown RBP17.87■□□□□ 0.45
COL9A3-214ENST00000490398 ZFYVE26Q68DK2 2539 aa17.87■□□□□ 0.45
COL9A3-214ENST00000490398 PRAMEF33A0A0G2JMD5 474 aa17.87■□□□□ 0.45
COL9A3-214ENST00000490398 VEGFDO43915 354 aa17.87■□□□□ 0.45
COL9A3-214ENST00000490398 AP2A1O95782 977 aa17.87■□□□□ 0.45
COL9A3-214ENST00000490398 IFNB1P01574 187 aa17.87■□□□□ 0.45
COL9A3-214ENST00000490398 PRSS56P0CW18 603 aa17.87■□□□□ 0.45
COL9A3-214ENST00000490398 HOXB3P14651 431 aaPredicted RBP17.87■□□□□ 0.45
COL9A3-214ENST00000490398 GRIA1P42261 906 aa17.87■□□□□ 0.45
COL9A3-214ENST00000490398 LSSP48449 732 aa17.87■□□□□ 0.45
COL9A3-214ENST00000490398 P3H1Q32P28 736 aa17.87■□□□□ 0.45
COL9A3-214ENST00000490398 TBC1D25Q3MII6 688 aa17.87■□□□□ 0.45
COL9A3-214ENST00000490398 IYDQ6PHW0 289 aa17.87■□□□□ 0.45
COL9A3-214ENST00000490398 LRRTM4Q86VH4 590 aa17.87■□□□□ 0.45
COL9A3-214ENST00000490398 SLITRK4Q8IW52 837 aa17.87■□□□□ 0.45
COL9A3-214ENST00000490398 REXO1L1PQ8IX06 675 aa17.87■□□□□ 0.45
COL9A3-214ENST00000490398 ZNF398Q8TD17 642 aa17.87■□□□□ 0.45
COL9A3-214ENST00000490398 DNAJC1Q96KC8 554 aaKnown RBP17.87■□□□□ 0.45
COL9A3-214ENST00000490398 DCBLD2Q96PD2 775 aa17.87■□□□□ 0.45
COL9A3-214ENST00000490398 ETNK1Q9HBU6 452 aa17.87■□□□□ 0.45
COL9A3-214ENST00000490398 TMEM9Q9P0T7 183 aa17.87■□□□□ 0.45
COL9A3-214ENST00000490398 ZNF148Q9UQR1 794 aa17.87■□□□□ 0.45
COL9A3-214ENST00000490398 LOC400499M0QZD8 3231 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms