RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 CD84Q9UIB8 345 aa11.38□□□□□ -0.59
C9orf3-220ENST00000489318 MRPS17Q9Y2R5 130 aaKnown RBP11.38□□□□□ -0.59
C9orf3-220ENST00000489318 PLXND1Q9Y4D7 1925 aa11.38□□□□□ -0.59
C9orf3-220ENST00000489318 CCDC189A1A4V9 331 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 KRBA1A5PL33 1030 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 GOLGA8CPA6NN73 597 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 TARM1B6A8C7 271 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 KLF11O14901 512 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 MMP20O60882 483 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 NIPSNAP2O75323 286 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 RNASEH2AO75792 299 aaKnown RBP11.37□□□□□ -0.59
C9orf3-220ENST00000489318 IGLV3-19P01714 112 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 PYGLP06737 847 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 LTA4HP09960 611 aaKnown RBP11.37□□□□□ -0.59
C9orf3-220ENST00000489318 SBK3P0C264 359 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 NDUFV2P19404 249 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 SAT1P21673 171 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 CD72P21854 359 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 GMPRP36959 345 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 SKIV2L2P42285 1042 aaKnown RBP11.37□□□□□ -0.59
C9orf3-220ENST00000489318 CLCN7P51798 805 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 PGGT1BP53609 377 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 ADPRHP54922 357 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 SFSWAPQ12872 951 aaKnown RBP11.37□□□□□ -0.59
C9orf3-220ENST00000489318 PCLAFQ15004 111 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 MAP7D1Q3KQU3 841 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 TMEM259Q4ZIN3 620 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 TECRLQ5HYJ1 363 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 HHATQ5VTY9 493 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 NEK5Q6P3R8 708 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP11.37□□□□□ -0.59
C9orf3-220ENST00000489318 Q6ZS52 159 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 SYT13Q7L8C5 426 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 TBC1D1Q86TI0 1168 aaPredicted RBP11.37□□□□□ -0.59
C9orf3-220ENST00000489318 CACUL1Q86Y37 369 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 UBALD2Q8IYN6 164 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 ARMC2Q8NEN0 867 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 GIMAP7Q8NHV1 300 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 RAB3IL1Q8TBN0 382 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 KCTD4Q8WVF5 259 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 BTN2A2Q8WVV5 523 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 ASB12Q8WXK4 309 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 GLYATL1Q969I3 302 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 SIPA1Q96FS4 1042 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 SHDQ96IW2 340 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 ZNF317Q96PQ6 595 aaPredicted RBP11.37□□□□□ -0.59
C9orf3-220ENST00000489318 CLPBQ9H078 707 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 KDM4CQ9H3R0 1056 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 NMRAL1Q9HBL8 299 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 SYTL2Q9HCH5 934 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 PREBQ9HCU5 417 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 ZNF358Q9NW07 568 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 FBXL12Q9NXK8 326 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 SIRPGQ9P1W8 387 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 KLHL42Q9P2K6 505 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 MID2Q9UJV3 735 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 CA14Q9ULX7 337 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 NDRG2Q9UN36 371 aaKnown RBP11.37□□□□□ -0.59
C9orf3-220ENST00000489318 MTF2Q9Y483 593 aaPredicted RBP11.37□□□□□ -0.59
C9orf3-220ENST00000489318 PRSS21Q9Y6M0 314 aa11.37□□□□□ -0.59
C9orf3-220ENST00000489318 TRPM6Q9BX84 2022 aa11.36□□□□□ -0.59
C9orf3-220ENST00000489318 UNC80Q8N2C7 3258 aa11.36□□□□□ -0.59
C9orf3-220ENST00000489318 KANSL1LA0AUZ9 987 aa11.36□□□□□ -0.59
C9orf3-220ENST00000489318 QSOX1O00391 747 aa11.36□□□□□ -0.59
C9orf3-220ENST00000489318 NEMP1O14524 444 aa11.36□□□□□ -0.59
C9orf3-220ENST00000489318 TM7SF2O76062 418 aa11.36□□□□□ -0.59
C9orf3-220ENST00000489318 RHOBTB1O94844 696 aa11.36□□□□□ -0.59
C9orf3-220ENST00000489318 AP2A2O94973 939 aa11.36□□□□□ -0.59
C9orf3-220ENST00000489318 TSPAN12O95859 305 aa11.36□□□□□ -0.59
C9orf3-220ENST00000489318 BPGMP07738 259 aa11.36□□□□□ -0.59
C9orf3-220ENST00000489318 CD1DP15813 335 aa11.36□□□□□ -0.59
C9orf3-220ENST00000489318 GABRG2P18507 467 aa11.36□□□□□ -0.59
C9orf3-220ENST00000489318 DGKEP52429 567 aa11.36□□□□□ -0.59
C9orf3-220ENST00000489318 PDAP1Q13442 181 aaKnown RBP11.36□□□□□ -0.59
C9orf3-220ENST00000489318 TERF2Q15554 542 aa11.36□□□□□ -0.59
C9orf3-220ENST00000489318 SEPT7Q16181 437 aaKnown RBP11.36□□□□□ -0.59
C9orf3-220ENST00000489318 FAM83EQ2M2I3 478 aa11.36□□□□□ -0.59
C9orf3-220ENST00000489318 LDLRAP1Q5SW96 308 aa11.36□□□□□ -0.59
C9orf3-220ENST00000489318 TTC19Q6DKK2 380 aaPredicted RBP11.36□□□□□ -0.59
C9orf3-220ENST00000489318 LRRC8EQ6NSJ5 796 aa11.36□□□□□ -0.59
C9orf3-220ENST00000489318 UGT3A1Q6NUS8 523 aa11.36□□□□□ -0.59
C9orf3-220ENST00000489318 PHYKPLQ8IUZ5 450 aa11.36□□□□□ -0.59
C9orf3-220ENST00000489318 FSTL5Q8N475 847 aaPredicted RBP11.36□□□□□ -0.59
C9orf3-220ENST00000489318 GDAP1Q8TB36 358 aa11.36□□□□□ -0.59
C9orf3-220ENST00000489318 LKAAEAR1Q8TD35 194 aa11.36□□□□□ -0.59
C9orf3-220ENST00000489318 ANKRD49Q8WVL7 239 aa11.36□□□□□ -0.59
C9orf3-220ENST00000489318 DYDC1Q8WWB3 177 aa11.36□□□□□ -0.59
C9orf3-220ENST00000489318 ERLEC1Q96DZ1 483 aa11.36□□□□□ -0.59
C9orf3-220ENST00000489318 PDLIM5Q96HC4 596 aaKnown RBP11.36□□□□□ -0.59
C9orf3-220ENST00000489318 TSNARE1Q96NA8 513 aa11.36□□□□□ -0.59
C9orf3-220ENST00000489318 NELL2Q99435 816 aa11.36□□□□□ -0.59
C9orf3-220ENST00000489318 GPR21Q99679 349 aa11.36□□□□□ -0.59
C9orf3-220ENST00000489318 C1QTNF2Q9BXJ5 285 aa11.36□□□□□ -0.59
C9orf3-220ENST00000489318 OSBPL6Q9BZF3 934 aa11.36□□□□□ -0.59
C9orf3-220ENST00000489318 DERL2Q9GZP9 239 aa11.36□□□□□ -0.59
C9orf3-220ENST00000489318 SLC6A17Q9H1V8 727 aa11.36□□□□□ -0.59
C9orf3-220ENST00000489318 EPN3Q9H201 632 aa11.36□□□□□ -0.59
C9orf3-220ENST00000489318 MRPL46Q9H2W6 279 aaKnown RBP11.36□□□□□ -0.59
C9orf3-220ENST00000489318 USP36Q9P275 1121 aaKnown RBP11.36□□□□□ -0.59
C9orf3-220ENST00000489318 COPG2Q9UBF2 871 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms